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BIOCHEMISTRY
Glycolysis and
related phenomena
AGENDA:
Glycolysis – (from the Greek words γλυκυς – sweet or
sugar; λυσις – dissolution) – is a universal pathway in
the living cell. This pathway is often reffered to as
Embden-Meyerhof pathway.
Glycolysis is the sequence of reactions that converts
glucose into pyruvate (or lactate) with the concomitant
productions of ATP.
In aerobic organisms, glycolysis is the prelude to the
citric acid cycle and the electron-transport chain,
which together harvest most of the energy contained in
glucose.
Under aerobic conditions, pyruvate enters
mitochondria, where it is completely oxidized to CO2
and H2O. If the supply of oxygen is insufficient, as in
actively contracting muscle, pyruvate is converted into
lactate. In some anaerobic organisms, such as yeast,
pyruvate is transformed into ethanol.
Glycolysis is listed among major pathways of carbohydrate
metabolism, mainly they are as follows:
-glycolysis (oxidation of G[lucose] to pyruvate/lactate)
-citric acid cycle (oxidation of Acetyl-CoA to CO2)
-gluconeogenesis (synthesis of G from non-carbonic precursors: amino
acids, glycerol etc.)
-glycogenesis (formation of glycogen from G)
-glycogenolis (breakdown of glycogen to G)
-galactose methabolism (conversion of galactose to G and synthesis of
lactose)
-fructose metabolism (oxidation of fructose to pyruvate)
-hexose monophosphat shunt (pentose phosphat pathway of G direct
oxidation to CO2 andH2O)
-uronic acid pathway (convertation of G to glucuronic acid, pentoses
[even to ascorbinic acid but not in man!])
-amino sugar and mucopolysaccharide metabolism (the synthesis of
amino sugars for the formation of mucopolysaccharides and
glycoproteins).
Sponsored
Medical Lecture Notes – All Subjects
USMLE Exam (America) – Practice
Pyruvate (pyruvic acid) and related compounds
Main types of glycolysis reactions
(1) – Phosphoryl transfer
– phosphoryl group is transferred from ATPtoa
glycolitic intermediate, or vice versa
Main types of glycolysis reactions
(2) – Phosphoryl shift
– phosphoryl group is shifted within a molecule from
one oxygen atom to another
Main types of glycolysis reactions
(3) – Isomerization
– a ketose is converted into aldose, or vice versa
Main types of glycolysis reactions
(4) – Dehydratation
– a molecule of water is eliminated
Main types of glycolysis reactions
(5) – Aldol cleavage
– a carbon-carbone bond is split in a reversal of an
aldol condensation
Fates of Glucose
There are two pathways of glycolysis reactions:
-anaerobic (absence of oxygen: leads to lactate)
-aerobic (presence of oxygen: lead to pyruvate)
[dichotomic degrading: διχα- – divided into two parts]
[apotomic degrading: απο- – cleavage]
– glycolysis is a pathway for ATPsynthesis in tissues
lacking mitochondria (erythrocytes, cornea, lens etc)
– glycolysis is essential for brain
– glycolysis is a central metabolic pathway with many
intermediates providing branch point to other
pathways
Main
features of
Glycolysis
Generally the glycolysis pathway can be divided into
three distinct phases
I.Energy investment phase (G is irreversibly
phosphorylated to Glucose 6-phosphate by hexokinase or
glucokinase [isoenzymes] dependent on ATPand Mg2+)
II.Splitting phase (six carbon fructose 1,6-bisphosphate is
split by aldolase [hence the name lysis] into two three-carbon
compounds: glyceraldehyde 3-phosphate and
dihydroxyacetone phosphate)
III.Energy generating phase (glyceraldehyde 3-phosphate
dehydrogenase converts glyceraldehyde 3-phosphate to
1,3-bisphosphoglycerate it is involved in the formation of
NADH+H+ and high energy compound: 1,3-bisphospho-
glycerate [iodoacetate and arsenate inhibit the enzyme])
Glucose → Glucose 6-phosphate [1°-irreversible]
(hexokinase) [+ATP+divalent metal]
Hexokinase (glucokinase) – like
all other kinases, requires Mg2+
(or another divalent metal ion
such as Mn2+)
Glucose 6-phosphate → Fructose 6-phosphate [2°]
(phosphoglucose isomerase)
Fructose 6-phosphate → Fructose 1,6-bisphosphate
[3°-irreversible]
(phosphofructokinase) [+ATP Mg2+]
Fructose 1,6-bisphosphate →
Dihydroxyacetone phosphate [4°]
+ Glyceraldehyde 3-phosphate (aldolase)
triose phosphate [phosphotriose] isomerase convert
Dihydroxyacetone phosphate to Glyceraldehyde 3-phosphate
Glyceraldehyde 3-phosphate
oxydated →
1,3-bisphosphoglycerate [5°]
(Glyceraldehyde 3-phosphate
dehydrogenase)
[+NAD+Pi]
1,3-bisphosphoglycerate →
3-phosphoglycerate [6°]
(phosphoglyceratekinase)
[ADP (Mg2+) → ATP]
3-phosphoglycerate → 2-phosphoglycerate [7°]
(phosphogyceromutase)
3-phosphoglycerate → phosphoenolpyruvate [8°]
(enolase) [Mg2+]
Phosphoenolpyruvate → pyruvate [9°-irreversible]
(pyruvatekinase) [ADP (Mg2+) → ATP]
Summary for glycolysis
reartions:
Glucose
+ [2ADP + 2NAD+ + 2Pi ] →
2 Pyruvate
+ [2ATP + 2NADH + 2H+ + 2H2O]
Generation of ATP in Glucose metabolism
Regulation of glycolysis
The three enzymes:
Hexocinase (and glucokinase)
Phosphofructokinase
Pyruvate kinase
are catalysing the irrevrsible reactions, what can be
considered as regulation of glycolysis
Hexokinase – is inhibited by glucose-6-phospate
Phosphofructokinase – allosteric enzyme regulated by allosteric
effectors, most important regularory enzyme in glycolysis – it catalyses the rate limiting
committed step, inhibited by ATP,citrate and H+ ions (low pH); fructose 2,6-
bisphosphate,ADP,AMP and Pi – are allosteric activators
Pyruvate kinase – is inhibited by ATPand activated by fructose1,6-
bisphosphate
Regulation of fructose 2,6 bisphosphate
Phospho-fructokinase 2
– allosteric enzymeregulated
by allosteric effectors, most
important regularory enzyme
in glycolysis – it catalyses the
rate limiting committed step,
inhibited by ATP,citrate and
H+ ions (low pH); fructose
2,6-bisphosphate, ADP,AMP
and Pi – are allosteric
activators
[in fact, the combined name of
phosphofructokinase 2/fructose
2,6 bisphosphatase is used to
refer to the enzyme that synthesis
and degrades fructose 2,6
bisphosphate – bifunctional
enzyme]
Regulation of pyruvate kinase
pyruvate kinase
– is inhibited by ATP,and
activated by
fructose 1,6-bisphospate.
pyruvate kinase is actove
(a)in dephosphorylated
state and inactive (b) in
phosphorylated state.
Inactivation of pyruvate
kinase by phosphorylation
is brought about by
cAMP-dependent protein
kinase. The hormone –
glucagon – inhibits
hepatic glycolysis by this
mechanism
Regulation of glycolysis
Pasteur effect – inhibition of glycolysis by oxygen (aerobic
condition)
Crabtree effect – the phenomenon of inhibition of oxygen
consumption by the addition of glucose to tissues having high aerobic
glycolysis. This is opposite to the Pasteur effect – is due to increased
competition of glycolysis for inorganic phosphate (Pi) and NAD+ which
limits their availability for phosphorylation and oxidation.
Rapaport-Leubering cycle
for the synthesis of 2,3-
bisphosphoglycerate
This is a supplementary pathway to
glycolysis which is operative in the
erythrocytes of man and other mammals.
This cycle is mainly concerned with the
synthesis of 2,3-bisphosphoglycerate in
the red blood cells.
Pyruvate (enol) → Pyruvate (keto)
(spontaneously) and → L-Lactate (lactate
dehydrogenase)
Main source of Glucose for glycolysis is Glycogen
Some poli- and disaccharides are hydrolyzed to
monosaccharides which directly cannot enter the
glycolysis.
Entry of
Fructose,
Galactose,
and
Mannose
into
Glycolysis
Galactose → Glucose
(uridin diphosphate [UDP] + NAD+)
Pyruvate is the main source of Acetyl-CoA
(catalyzed by pyruvate dehydrogenese)
Conversion of pyruvate to acetyl CoA
Pyruvate is conversed to acetyl CoA by oxidativedecarboxylation.
This is an irreversible reaction, catalysed by a multienzyme complex –
pyruvate dehydrogenase complex, which is found in the mitochondria.
High activities of pyruvate dehydrogenase complex are found in cardiac
muscle and kidney. It requires five cofactors (coenzymes): thiamine
pyrophosphate (TPP), lipoamide, flavin adenin dinucleotid(FAD),
coenzyme A, and nicotine adenin dinucleotid (NAD+) - (lipoamide
contains lipoic acid linked to ε-amino group of lysine)
Fatty acids –
by reactions of β-oxidation,
also, –
leads to Acetyl-CoA
Acetyl-CoA it the main source of Energy
Cycle of citric acid
(Kreb’s cycle)
[tricarboxylic acid
cycle]
and it is a starting point of some very important
substance synthesis
named
CHOLESTEROL
it leads to steroid hormones,
bile acids,
membrane construction
It is very important in genesis of vascular pathology
Cholesterol synthesis pathway
isoprenoid unit (5C)
(isopren СН2=С(СН3)-СН=СН2)
Cholesterol (1-step) Acetoacetyl CoA (thiolase)
Cholesterol (2-step) β-hydroxy β-methylglutaryl CoA
(hydroxy-methylglutaril CoA synthase)
Cholesterol (3-step) mevalonate (6C)
(β-hydroxy β-methylglutaril CoA reductase)
Hydroxy-
methylglutaril CoA
reductase is
inhubited by
statins and fibrates
Cholesterol (4-step) 5-phosphomevalonate (6C)
(mevalonate kinase)
Cholesterol (5-step) 5-pyrophosphomevalonate (6C)
(phosphomevalonate kinase)
Cholesterol (6-step)
3-phospho 5-pyrophosphomevalonate (kinase)
Cholesterol (7-step) isopentenyl pyrophosphate (5C)
(pyrophosphomemalonate decarboxylasae)
Cholesterol (8-step) dimethylallyl pyrophosphate (5C)
(isopentenyl pyrophoshate isomerase)
Cholesterol (9-step) geranyl pyrophosphate (10C)
(cis-prenyltransferase)
Cholesterol (10-step) farnesyl pyrophosphate (15C)
(cis-prenyltransferase)
+ dimethylallyl pyrophosphate (5C)
Cholesterol (11-step) squalene (30C)
(squalene synthase)
Cholesterol (12-step) lanosterol (30C)
(epoxidase+hydrolase+cyclase)
Cholesterol (13-step + ~ 19 reactions) cholesterol (27C)
(with different enzymes participation)
Cholesterol structure
Thank YOU for ATTENTION

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Glycolysis & related phenomena

  • 2. AGENDA: Glycolysis – (from the Greek words γλυκυς – sweet or sugar; λυσις – dissolution) – is a universal pathway in the living cell. This pathway is often reffered to as Embden-Meyerhof pathway.
  • 3. Glycolysis is the sequence of reactions that converts glucose into pyruvate (or lactate) with the concomitant productions of ATP. In aerobic organisms, glycolysis is the prelude to the citric acid cycle and the electron-transport chain, which together harvest most of the energy contained in glucose. Under aerobic conditions, pyruvate enters mitochondria, where it is completely oxidized to CO2 and H2O. If the supply of oxygen is insufficient, as in actively contracting muscle, pyruvate is converted into lactate. In some anaerobic organisms, such as yeast, pyruvate is transformed into ethanol.
  • 4. Glycolysis is listed among major pathways of carbohydrate metabolism, mainly they are as follows: -glycolysis (oxidation of G[lucose] to pyruvate/lactate) -citric acid cycle (oxidation of Acetyl-CoA to CO2) -gluconeogenesis (synthesis of G from non-carbonic precursors: amino acids, glycerol etc.) -glycogenesis (formation of glycogen from G) -glycogenolis (breakdown of glycogen to G) -galactose methabolism (conversion of galactose to G and synthesis of lactose) -fructose metabolism (oxidation of fructose to pyruvate) -hexose monophosphat shunt (pentose phosphat pathway of G direct oxidation to CO2 andH2O) -uronic acid pathway (convertation of G to glucuronic acid, pentoses [even to ascorbinic acid but not in man!]) -amino sugar and mucopolysaccharide metabolism (the synthesis of amino sugars for the formation of mucopolysaccharides and glycoproteins).
  • 5. Sponsored Medical Lecture Notes – All Subjects USMLE Exam (America) – Practice
  • 6. Pyruvate (pyruvic acid) and related compounds
  • 7. Main types of glycolysis reactions (1) – Phosphoryl transfer – phosphoryl group is transferred from ATPtoa glycolitic intermediate, or vice versa
  • 8. Main types of glycolysis reactions (2) – Phosphoryl shift – phosphoryl group is shifted within a molecule from one oxygen atom to another
  • 9. Main types of glycolysis reactions (3) – Isomerization – a ketose is converted into aldose, or vice versa
  • 10. Main types of glycolysis reactions (4) – Dehydratation – a molecule of water is eliminated
  • 11. Main types of glycolysis reactions (5) – Aldol cleavage – a carbon-carbone bond is split in a reversal of an aldol condensation
  • 13. There are two pathways of glycolysis reactions: -anaerobic (absence of oxygen: leads to lactate) -aerobic (presence of oxygen: lead to pyruvate) [dichotomic degrading: διχα- – divided into two parts] [apotomic degrading: απο- – cleavage] – glycolysis is a pathway for ATPsynthesis in tissues lacking mitochondria (erythrocytes, cornea, lens etc) – glycolysis is essential for brain – glycolysis is a central metabolic pathway with many intermediates providing branch point to other pathways
  • 15. Generally the glycolysis pathway can be divided into three distinct phases I.Energy investment phase (G is irreversibly phosphorylated to Glucose 6-phosphate by hexokinase or glucokinase [isoenzymes] dependent on ATPand Mg2+) II.Splitting phase (six carbon fructose 1,6-bisphosphate is split by aldolase [hence the name lysis] into two three-carbon compounds: glyceraldehyde 3-phosphate and dihydroxyacetone phosphate) III.Energy generating phase (glyceraldehyde 3-phosphate dehydrogenase converts glyceraldehyde 3-phosphate to 1,3-bisphosphoglycerate it is involved in the formation of NADH+H+ and high energy compound: 1,3-bisphospho- glycerate [iodoacetate and arsenate inhibit the enzyme])
  • 16. Glucose → Glucose 6-phosphate [1°-irreversible] (hexokinase) [+ATP+divalent metal] Hexokinase (glucokinase) – like all other kinases, requires Mg2+ (or another divalent metal ion such as Mn2+)
  • 17. Glucose 6-phosphate → Fructose 6-phosphate [2°] (phosphoglucose isomerase)
  • 18. Fructose 6-phosphate → Fructose 1,6-bisphosphate [3°-irreversible] (phosphofructokinase) [+ATP Mg2+]
  • 19. Fructose 1,6-bisphosphate → Dihydroxyacetone phosphate [4°] + Glyceraldehyde 3-phosphate (aldolase) triose phosphate [phosphotriose] isomerase convert Dihydroxyacetone phosphate to Glyceraldehyde 3-phosphate
  • 20. Glyceraldehyde 3-phosphate oxydated → 1,3-bisphosphoglycerate [5°] (Glyceraldehyde 3-phosphate dehydrogenase) [+NAD+Pi]
  • 22. 3-phosphoglycerate → 2-phosphoglycerate [7°] (phosphogyceromutase)
  • 24. Phosphoenolpyruvate → pyruvate [9°-irreversible] (pyruvatekinase) [ADP (Mg2+) → ATP]
  • 25. Summary for glycolysis reartions: Glucose + [2ADP + 2NAD+ + 2Pi ] → 2 Pyruvate + [2ATP + 2NADH + 2H+ + 2H2O]
  • 26. Generation of ATP in Glucose metabolism
  • 27. Regulation of glycolysis The three enzymes: Hexocinase (and glucokinase) Phosphofructokinase Pyruvate kinase are catalysing the irrevrsible reactions, what can be considered as regulation of glycolysis Hexokinase – is inhibited by glucose-6-phospate Phosphofructokinase – allosteric enzyme regulated by allosteric effectors, most important regularory enzyme in glycolysis – it catalyses the rate limiting committed step, inhibited by ATP,citrate and H+ ions (low pH); fructose 2,6- bisphosphate,ADP,AMP and Pi – are allosteric activators Pyruvate kinase – is inhibited by ATPand activated by fructose1,6- bisphosphate
  • 28. Regulation of fructose 2,6 bisphosphate Phospho-fructokinase 2 – allosteric enzymeregulated by allosteric effectors, most important regularory enzyme in glycolysis – it catalyses the rate limiting committed step, inhibited by ATP,citrate and H+ ions (low pH); fructose 2,6-bisphosphate, ADP,AMP and Pi – are allosteric activators [in fact, the combined name of phosphofructokinase 2/fructose 2,6 bisphosphatase is used to refer to the enzyme that synthesis and degrades fructose 2,6 bisphosphate – bifunctional enzyme]
  • 29. Regulation of pyruvate kinase pyruvate kinase – is inhibited by ATP,and activated by fructose 1,6-bisphospate. pyruvate kinase is actove (a)in dephosphorylated state and inactive (b) in phosphorylated state. Inactivation of pyruvate kinase by phosphorylation is brought about by cAMP-dependent protein kinase. The hormone – glucagon – inhibits hepatic glycolysis by this mechanism
  • 30. Regulation of glycolysis Pasteur effect – inhibition of glycolysis by oxygen (aerobic condition) Crabtree effect – the phenomenon of inhibition of oxygen consumption by the addition of glucose to tissues having high aerobic glycolysis. This is opposite to the Pasteur effect – is due to increased competition of glycolysis for inorganic phosphate (Pi) and NAD+ which limits their availability for phosphorylation and oxidation.
  • 31. Rapaport-Leubering cycle for the synthesis of 2,3- bisphosphoglycerate This is a supplementary pathway to glycolysis which is operative in the erythrocytes of man and other mammals. This cycle is mainly concerned with the synthesis of 2,3-bisphosphoglycerate in the red blood cells.
  • 32. Pyruvate (enol) → Pyruvate (keto) (spontaneously) and → L-Lactate (lactate dehydrogenase)
  • 33. Main source of Glucose for glycolysis is Glycogen
  • 34. Some poli- and disaccharides are hydrolyzed to monosaccharides which directly cannot enter the glycolysis.
  • 36. Galactose → Glucose (uridin diphosphate [UDP] + NAD+)
  • 37. Pyruvate is the main source of Acetyl-CoA (catalyzed by pyruvate dehydrogenese)
  • 38. Conversion of pyruvate to acetyl CoA Pyruvate is conversed to acetyl CoA by oxidativedecarboxylation. This is an irreversible reaction, catalysed by a multienzyme complex – pyruvate dehydrogenase complex, which is found in the mitochondria. High activities of pyruvate dehydrogenase complex are found in cardiac muscle and kidney. It requires five cofactors (coenzymes): thiamine pyrophosphate (TPP), lipoamide, flavin adenin dinucleotid(FAD), coenzyme A, and nicotine adenin dinucleotid (NAD+) - (lipoamide contains lipoic acid linked to ε-amino group of lysine)
  • 39. Fatty acids – by reactions of β-oxidation, also, – leads to Acetyl-CoA
  • 40. Acetyl-CoA it the main source of Energy
  • 41. Cycle of citric acid (Kreb’s cycle) [tricarboxylic acid cycle]
  • 42. and it is a starting point of some very important substance synthesis named CHOLESTEROL it leads to steroid hormones, bile acids, membrane construction It is very important in genesis of vascular pathology
  • 43. Cholesterol synthesis pathway isoprenoid unit (5C) (isopren СН2=С(СН3)-СН=СН2)
  • 45. Cholesterol (2-step) β-hydroxy β-methylglutaryl CoA (hydroxy-methylglutaril CoA synthase)
  • 46. Cholesterol (3-step) mevalonate (6C) (β-hydroxy β-methylglutaril CoA reductase) Hydroxy- methylglutaril CoA reductase is inhubited by statins and fibrates
  • 47. Cholesterol (4-step) 5-phosphomevalonate (6C) (mevalonate kinase)
  • 48. Cholesterol (5-step) 5-pyrophosphomevalonate (6C) (phosphomevalonate kinase)
  • 50. Cholesterol (7-step) isopentenyl pyrophosphate (5C) (pyrophosphomemalonate decarboxylasae)
  • 51. Cholesterol (8-step) dimethylallyl pyrophosphate (5C) (isopentenyl pyrophoshate isomerase)
  • 52. Cholesterol (9-step) geranyl pyrophosphate (10C) (cis-prenyltransferase)
  • 53. Cholesterol (10-step) farnesyl pyrophosphate (15C) (cis-prenyltransferase) + dimethylallyl pyrophosphate (5C)
  • 54. Cholesterol (11-step) squalene (30C) (squalene synthase)
  • 55. Cholesterol (12-step) lanosterol (30C) (epoxidase+hydrolase+cyclase)
  • 56. Cholesterol (13-step + ~ 19 reactions) cholesterol (27C) (with different enzymes participation)
  • 58. Thank YOU for ATTENTION