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Environment Institute
                   Science Seminar Series 2009


   How can we help biodiversity adapt to
      the ravages of climate change?

Presented by: Professor Andrew Lowe
Australian Centre for Evolutionary Biology & Biodiversity
www.adelaide.edu.au/environment/acebb
Climate change is with us
Increasing temperature
Rainfall redistribution
Rising sea levels
Fire frequency

Expect major impacts on ecosystems
– Phenological and ecosystem integrity
– Migration of species
– Adaptation
– Extinction
ecological vs. evolutionary adaptation

               fundamental niche

Native                realised                      bioclimatic
range    competitor              herbivore
                        niche                        envelope



                Enemy release                Adaptational shift

               fundamental niche
Invasive
range                     realised                      bioclimatic
         competitor
                            niche                        envelope
Future expectations




Queensland Rainforest vertebrates
Fox et al, 2003, Proc Roy Soc
Future expectations




Fox et al, 2003, Proc Roy Soc
Things are already starting to change


                        Oak trees
                        budding more than 1 month
                        earlier




                        Swallows
                        arriving half a month earlier
Namibian Aloe Tree
 Significant range shift in last 100 years

     1914
                                                 2002




            Trailing edge (north)

                                    Diversity & Distributions, 2008
Namibian Aloe Tree
 Significant range shift in last 100 years
         1904
                                                  2002




          Leading edge (south)

                                 Diversity & Distributions, 2008
Need to define new conservation
paradigms in face of climate change
Biodiversity corridor planning
  Conserve and expand refugial populations
  Connect landscape to promote migration
  Assisted dispersal or predictive provenancing

Long-term experiments and ecosystem monitoring
  Setup long-term restoration experiments
  Monitoring changing ecosystems
Biodiversity corridor planning
Conserve and expand refugial populations
  Basis of current conservation action,
   – no need to change,
   – i.e. not going to make things worse
  Population size of 1000 promotes adaptation
   – Sgro, Lowe, Hoffman, TREE
  Other mechanisms to promote adaptation
  Locate refugia in landscape (Jolene Scoble)
Species Migrations
– historical context

  600 sequences of oak
  (Brewer et al 2002
  Forest Ecol & Man.)




         Maximum rate of 500 m/year; 10-20 km in a
  generation
Phylogeographic analysis of European oak




                                         12 EU labs
                                         2613 populations
                                         12,214 trees
                                         37 countries
Petit et al, 2002a, Forest Ecol & Man.   45 cpDNA types
Phylogenetic analysis
    reveals distinct lineages
    and colonisation routes




                                  Primary refugium
                                  (pollen evidence)

                                  Primary refugium
                                   (no pollen evidence)

                                  Secondary refugium




                                  ?


                      ?
                                  ?
?



                                         500 km


          Petit et al, 2002a, Forest Ecol & Man.
Phylogenetic diversity and species refugia




  Hewgill & Moritz
Biodiversity corridor planning
Conserve and expand refugial populations
  Combine genetic refugia with landscape refugia & ecological gradients
Biodiversity corridor planning
         Landscape permiability
How will species cope with
fragmented landscapes between refugia?
SA pre-European state

                    Total area = 780,000 ha




Dave Turner, DEH
Current state

                   Total area = 780,000 ha
                   Remnants = 98,000 ha

                   Approx 12.5% remaining




Dave Turner, DEH
A) Deforested area



Biodiversity corridor planning
    Landscape permiability
   Migration rate and
   landscape interaction                      B) Rainforest




                                              C) Tall eucalypt forest




Pavlacky et al, in press, Molecular Ecology
Biodiversity corridor planning
    Landscape permiability


   Not all fragmented
   landscape interactions
   negative, for some
   species open habitat can
   promote geneflow
   Depends on scale 2-10
   km maybe ok, 500km not
   Incorporate actual gene
   flow parameters into
   landscape modelling
   Socioeconomic matrix

                                 Dick, 2001, Proc Roy Soc
Permeability of landscapes




                             David Turner, DEH
Biodiversity corridor planning
 Assisted dispersal and restoration

Assisted dispersal
– Moving target species
Predictive provenancing
– Using predictions of future distribution
Composite provenancing
Current distribution   Future distribution




E obliqua
Messmate
stringybark




                                            Dave Turner
Biodiversity corridor planning
      Assisted dispersal and restoration


                       Frequency of propagule dispersal
Overiding local is
                                                                                              Recpmmended proportion of stock
best policy                                                                                   sourced from local, intermediate
                                                                                              and long distance sources, following
 – Maximises local                                                                            natural gene flow dispersal kernal
   adaptation
                                                                                              Local
 – lowers diversity,
   reduces future
   resilience
                                                                                              Intermediate


Mimic species                                                                                 Long distance
movement and
gene flow                                                 Local              Intermediate                         Long distance




                                                           Distance from parent plant
                                                                  Broadhurst et al, 2008, Evolutionary Applications
Biodiversity corridor planning
    Integrated planning e.g. EmW




Combine reserve systems and community uptake (heritage agreements)
Craig Costion, PhD, University of Adelaide
Biodiversity corridor planning
    Integrated planning e.g. EmW




Combine reserve systems and community uptake (heritage agreements)
Craig Costion, PhD, University of Adelaide
Long-term experiments and ecosystem monitoring


   Need to set up
   – Long-term restoration plantings to test outcomes
   – Ecosystem condition monitoring
Restoration
                                                          plantings

                                                  •5 terrestrial biodiversity
                                                  corridors across biogeographic
                                                  zones – linking reserves
                                                  •Across SA government
                                                  •Including research institutes
                                                  and business




Terrestrial reserves and nature links corridors
NatureLinks
                                                  •Using predictive modelling, for
                                                  species and communities, identify
                                                  pinch points and permeability of
                                                  landscape
                                                  •Integrate adaptation (corridors)
                                                  and mitigation (carbon
                                                  sequestration) in biodiversity
                                                  conservation strategy planning and
                                                  incentivisation
                                                  •Incorporate assisted dispersal and
                                                  adaptive planting strategies

   •Example - River Murray Forest


Terrestrial reserves and nature links corridors
Long-term experiments and ecosystem monitoring
              Restoration plantings

                            Onground plantings
         Species
                            Best current practise:
  past   present   future
                            4.     Species and
                                   provenance selection
       Provenance           5.     Evaluate outcomes
  past   present future            with MBIs
                                                            future


         Gene flow          Future recommendations
  past    present future
                                 Integrate info to derive
                                     new evidence-based
                                          guidelines
Long-term experiments and ecosystem monitoring

   Terrestrial Ecosystem Research Network
   – NCRIS funding ($500M in research infrastructure)
   – TERN – $20M, ecosystem monitoring (remote
     sensing, flux and plots), informatics and analysis
   Ecosystem monitoring
   – Dynamics and responses of Australian ecosystems
     relatively poorly understood
   – Climate change impacts difficult to predict
   – Need long-term monitoring and analysis
Monitoring to focus on Australian rangelands in first
 phase, to be extended into mesic systems later
 Target existing survey & monitoring sites where possible
Issues to be addressed by ecosystem monitoring programme

          Issues                          Application                             Methodology
  Biodiversity discovery   - species knowledge                           - taxonomy
                                                                         - DNA barcoding
  Species distribution     - modelling distribution                      - plot based
    - presence/absence       (e.g. bioclimatic envelope prediction for
                                present/futures)
  Demographic profile      - modelling species dynamics,                 - plot/photo based (age profile)
                               demographic processes                     - phylogeography/pop genetics
                                                                                (connectivity)
  Condition assessment     - change over time/structure/invasives        - plot/photo based –
                                                                              productivity
                                                                         - landscape function analysis
  Remote sensing ground    - improved remote sensing accuracy            - plots – ground cover/leaf area
     truthing                  and validation of derived products
                               (eg LAI)
  Soil resources           - stocks and flows of soils                   - C, N, P, K assessment
   - soil crusts           - role in arid ecosystems                     - DNA barcoding/taxonomy
  Climate/Moisture         - water cycling in rangelands                 - water collection
                                                                         - soil moisture probe
  Climate change           - shift in ecotonal boundaries                - plots across ecotones
      monitoring

 Focus on perennial flora and soils to start with, but could extend to fauna (ACRIS)
Plot/transect based methods

Species presence/absence
Structure, veg class height
Plot/transect (belt/line/point)
Age/size profile
Recruitment
Invasives, degraded
Landscape function
New methods to be developed
Plot/transect based methods, landscape function
DNA barcoding/taxonomy
Photo points and image interpretation
Population genetics: connectivity etc
Remote sensing ground truthing & plot visualisation
Soil nutrient stocks, moisture, cryptic biodiversity
Specific recommendations to pick up changes
TERN Partnerships and collaboration
Field survey
ACRIS              TERN ecosystem monitoring                   ABRS

                     Bush Heritage         Earthwatch




 Knowledge
  Ecological Understanding           Biodiversity discovery     Taxonomy
  Ecosystem Function/condition       Species distribution       DNA barcoding
  Ecosystem change                   Rare/threatened species    Systematics




 Accessible information/data
    Ecoinformatics & Remote Sensing            Atlas of Living Australia
                 TERN                              (AVH, OzCAM)
Need to define new conservation
paradigms in face of climate change
Biodiversity corridor planning
  Conserve and expand refugial populations
  Connect landscape to promote migration
  Assisted dispersal or predictive provenancing

Long-term experiments and ecosystem monitoring
  Setup long-term restoration experiments
  Monitoring changing ecosystems
Environment Institute
                  Science Seminar Series 2009

         Next Seminar: 22 June – 12pm

 Predicting coral reef biodiversity patterns
    for conservation a confederacy of
              ecological scales
Presented by:   Doctor Camille Mellin

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Science Seminar Series 10 Andrew Lowe

  • 1. Environment Institute Science Seminar Series 2009 How can we help biodiversity adapt to the ravages of climate change? Presented by: Professor Andrew Lowe Australian Centre for Evolutionary Biology & Biodiversity www.adelaide.edu.au/environment/acebb
  • 2. Climate change is with us Increasing temperature Rainfall redistribution Rising sea levels Fire frequency Expect major impacts on ecosystems – Phenological and ecosystem integrity – Migration of species – Adaptation – Extinction
  • 3. ecological vs. evolutionary adaptation fundamental niche Native realised bioclimatic range competitor herbivore niche envelope Enemy release Adaptational shift fundamental niche Invasive range realised bioclimatic competitor niche envelope
  • 4. Future expectations Queensland Rainforest vertebrates Fox et al, 2003, Proc Roy Soc
  • 5. Future expectations Fox et al, 2003, Proc Roy Soc
  • 6. Things are already starting to change Oak trees budding more than 1 month earlier Swallows arriving half a month earlier
  • 7. Namibian Aloe Tree Significant range shift in last 100 years 1914 2002 Trailing edge (north) Diversity & Distributions, 2008
  • 8. Namibian Aloe Tree Significant range shift in last 100 years 1904 2002 Leading edge (south) Diversity & Distributions, 2008
  • 9. Need to define new conservation paradigms in face of climate change Biodiversity corridor planning Conserve and expand refugial populations Connect landscape to promote migration Assisted dispersal or predictive provenancing Long-term experiments and ecosystem monitoring Setup long-term restoration experiments Monitoring changing ecosystems
  • 10. Biodiversity corridor planning Conserve and expand refugial populations Basis of current conservation action, – no need to change, – i.e. not going to make things worse Population size of 1000 promotes adaptation – Sgro, Lowe, Hoffman, TREE Other mechanisms to promote adaptation Locate refugia in landscape (Jolene Scoble)
  • 11. Species Migrations – historical context 600 sequences of oak (Brewer et al 2002 Forest Ecol & Man.) Maximum rate of 500 m/year; 10-20 km in a generation
  • 12. Phylogeographic analysis of European oak 12 EU labs 2613 populations 12,214 trees 37 countries Petit et al, 2002a, Forest Ecol & Man. 45 cpDNA types
  • 13. Phylogenetic analysis reveals distinct lineages and colonisation routes Primary refugium (pollen evidence) Primary refugium (no pollen evidence) Secondary refugium ? ? ? ? 500 km Petit et al, 2002a, Forest Ecol & Man.
  • 14. Phylogenetic diversity and species refugia Hewgill & Moritz
  • 15. Biodiversity corridor planning Conserve and expand refugial populations Combine genetic refugia with landscape refugia & ecological gradients
  • 16. Biodiversity corridor planning Landscape permiability How will species cope with fragmented landscapes between refugia?
  • 17. SA pre-European state Total area = 780,000 ha Dave Turner, DEH
  • 18. Current state Total area = 780,000 ha Remnants = 98,000 ha Approx 12.5% remaining Dave Turner, DEH
  • 19. A) Deforested area Biodiversity corridor planning Landscape permiability Migration rate and landscape interaction B) Rainforest C) Tall eucalypt forest Pavlacky et al, in press, Molecular Ecology
  • 20. Biodiversity corridor planning Landscape permiability Not all fragmented landscape interactions negative, for some species open habitat can promote geneflow Depends on scale 2-10 km maybe ok, 500km not Incorporate actual gene flow parameters into landscape modelling Socioeconomic matrix Dick, 2001, Proc Roy Soc
  • 21. Permeability of landscapes David Turner, DEH
  • 22. Biodiversity corridor planning Assisted dispersal and restoration Assisted dispersal – Moving target species Predictive provenancing – Using predictions of future distribution Composite provenancing
  • 23. Current distribution Future distribution E obliqua Messmate stringybark Dave Turner
  • 24. Biodiversity corridor planning Assisted dispersal and restoration Frequency of propagule dispersal Overiding local is Recpmmended proportion of stock best policy sourced from local, intermediate and long distance sources, following – Maximises local natural gene flow dispersal kernal adaptation Local – lowers diversity, reduces future resilience Intermediate Mimic species Long distance movement and gene flow Local Intermediate Long distance Distance from parent plant Broadhurst et al, 2008, Evolutionary Applications
  • 25. Biodiversity corridor planning Integrated planning e.g. EmW Combine reserve systems and community uptake (heritage agreements) Craig Costion, PhD, University of Adelaide
  • 26. Biodiversity corridor planning Integrated planning e.g. EmW Combine reserve systems and community uptake (heritage agreements) Craig Costion, PhD, University of Adelaide
  • 27. Long-term experiments and ecosystem monitoring Need to set up – Long-term restoration plantings to test outcomes – Ecosystem condition monitoring
  • 28. Restoration plantings •5 terrestrial biodiversity corridors across biogeographic zones – linking reserves •Across SA government •Including research institutes and business Terrestrial reserves and nature links corridors
  • 29. NatureLinks •Using predictive modelling, for species and communities, identify pinch points and permeability of landscape •Integrate adaptation (corridors) and mitigation (carbon sequestration) in biodiversity conservation strategy planning and incentivisation •Incorporate assisted dispersal and adaptive planting strategies •Example - River Murray Forest Terrestrial reserves and nature links corridors
  • 30. Long-term experiments and ecosystem monitoring Restoration plantings Onground plantings Species Best current practise: past present future 4. Species and provenance selection Provenance 5. Evaluate outcomes past present future with MBIs future Gene flow Future recommendations past present future Integrate info to derive new evidence-based guidelines
  • 31. Long-term experiments and ecosystem monitoring Terrestrial Ecosystem Research Network – NCRIS funding ($500M in research infrastructure) – TERN – $20M, ecosystem monitoring (remote sensing, flux and plots), informatics and analysis Ecosystem monitoring – Dynamics and responses of Australian ecosystems relatively poorly understood – Climate change impacts difficult to predict – Need long-term monitoring and analysis
  • 32. Monitoring to focus on Australian rangelands in first phase, to be extended into mesic systems later Target existing survey & monitoring sites where possible
  • 33. Issues to be addressed by ecosystem monitoring programme Issues Application Methodology Biodiversity discovery - species knowledge - taxonomy - DNA barcoding Species distribution - modelling distribution - plot based - presence/absence (e.g. bioclimatic envelope prediction for present/futures) Demographic profile - modelling species dynamics, - plot/photo based (age profile) demographic processes - phylogeography/pop genetics (connectivity) Condition assessment - change over time/structure/invasives - plot/photo based – productivity - landscape function analysis Remote sensing ground - improved remote sensing accuracy - plots – ground cover/leaf area truthing and validation of derived products (eg LAI) Soil resources - stocks and flows of soils - C, N, P, K assessment - soil crusts - role in arid ecosystems - DNA barcoding/taxonomy Climate/Moisture - water cycling in rangelands - water collection - soil moisture probe Climate change - shift in ecotonal boundaries - plots across ecotones monitoring Focus on perennial flora and soils to start with, but could extend to fauna (ACRIS)
  • 34. Plot/transect based methods Species presence/absence Structure, veg class height Plot/transect (belt/line/point) Age/size profile Recruitment Invasives, degraded Landscape function
  • 35. New methods to be developed Plot/transect based methods, landscape function DNA barcoding/taxonomy Photo points and image interpretation Population genetics: connectivity etc Remote sensing ground truthing & plot visualisation Soil nutrient stocks, moisture, cryptic biodiversity Specific recommendations to pick up changes
  • 36. TERN Partnerships and collaboration Field survey ACRIS TERN ecosystem monitoring ABRS Bush Heritage Earthwatch Knowledge Ecological Understanding Biodiversity discovery Taxonomy Ecosystem Function/condition Species distribution DNA barcoding Ecosystem change Rare/threatened species Systematics Accessible information/data Ecoinformatics & Remote Sensing Atlas of Living Australia TERN (AVH, OzCAM)
  • 37. Need to define new conservation paradigms in face of climate change Biodiversity corridor planning Conserve and expand refugial populations Connect landscape to promote migration Assisted dispersal or predictive provenancing Long-term experiments and ecosystem monitoring Setup long-term restoration experiments Monitoring changing ecosystems
  • 38. Environment Institute Science Seminar Series 2009 Next Seminar: 22 June – 12pm Predicting coral reef biodiversity patterns for conservation a confederacy of ecological scales Presented by: Doctor Camille Mellin