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9th monthly SEMINAR of CARES – SAU



Plant Biotechnology and Food Security:
    Prospects of Nuclear Research


                       Dr. Mirza Mofazzal Islam
                        Dr. Mirza Mofazzal Islam
        Principal Scientific Officer, Plant Breeding Division and
        Principal Scientific Officer, Plant Breeding Division and
                     Head, Biotechnology Division
                      Head, Biotechnology Division
          Bangladesh Institute of Nuclear Agriculture (BINA)
           Bangladesh Institute of Nuclear Agriculture (BINA)
                            Mymensingh 2202
                             Mymensingh 2202
                   E-mail: mirza_islam@yahoo.com
                    E-mail: mirza_islam@yahoo.com
Bangladesh Institute of Nuclear Agriculture
                   (BINA)
Human population is rapidly outgrowing
FOOD SECURITY
Exists when all people, at all times, have
  physical, social and economic access to
  sufficient, safe and nutritious food that meets
  their dietary needs and food preferences for an
  active and healthy life.”
      (Food and Agriculture Organization, U.N.)
Security for Whom?
      Individual             Sufficiency
      Family Unit            Safety
       (Households)          Economic Access
      Communities            Physical Access
       (Country)             Nutrition
      Regions
Source: Nanyang Technical University, Singapore                                   Capture
                                              Aquaculture              Fish                     Natural
                                                                                              Ecosystems
                 Animal Feed
                                                             Poultry
           Biofuels                                                             3. Access to Food
                                                            Mammals
                                                                                    (Income)
                                           2.
Other Uses                           Access to Food
                                    (Market Supply Chain)

          1b.Availability
          (Food Supply)                Distribution              Demand for                   Household
                                                                                                Food
        Production, Imports                                         Food
                                                                                               Security
             Stockpiles
                                                                                 Urban
                                          Processing/
                                                                              Food Security
                                      Distribution Losses
  Trade
                                                                                     4. Utility
                                                                                  Safety/Quality/
                                                                                  Nutritive Value
           1a. Availability              Science/
        (Primary Production)            Technology
           Crops/Animals

Inputs                        Sunshine                                 4 – Dimensional Food
       Labor Land Water
                                                                       Security Conceptual Model

                                                              Population Increases
      Fragility of Agro-ecosystems                             Diet Diversification
 Climate Change     Competition for Land                       Lifestyle Changes
        Changing Demographics
                                                                  Urbanization
      (e.g. fewer/ageing farmers)
Why is food a security issue?

                       DRIVERS
 CAUSES                                              SYMPTOMS

                                Food
 Globalization                Shortages           Deterioration of Health

                                                  Deterioration of Nutrition
                 Food Price
                 Increases                         Hunger
                                       Food        Loss of Life
 Conflict                            Insecurity
                                                   Civil Unrest
 Poverty            Food
                                                  Economic Instability
                   Hoarding

                                                  Political Instability
Climate Change
                                      Food
                                  Contamination   Social Instability
Main Threats to Food Security

                                      Food Availability
                                         Production
                                           Imports
                                         Stockpiles                 Chronic Food Security
 Transitory Food Security
                                     Food Access (Physical)
                                                                  • Demographic changes
• Weather disruptions and              Access to markets          • Poverty
    pest outbreaks                      Infrastructure            • Underinvestment in
• Rising energy prices                                                infrastructure/tech.
• Competition from energy           Food Access (Economic)        • Climate change
sector                                   Employment               • Fragility of agro-
• Policy changes e.g. trade          Overseas Remittances         ecosystems
• Lower holdings of cereal         Foreign Direct Investment      • Unfriendly policies
stocks                                      Trade                 towards
• Diversion from staple to                                            farmers
cash                                   Food Utilization           • Declining no. of farmers
    crops                             Health and nutrition        • Globalisation
• Conflict/Terrorist activities
                                      Sanitation/Hygiene
• Economic factors
                                  Storage/processing facilities
                                         Clean water

                              Four Dimensions of Food Security
Biotechnology links to Food Security

Food Availability
Food Availability
  Production
  Production
  Losses
  Losses
  Climate Change (CC)
  Climate Change (CC)
Food Distribution
Food Distribution
  Losses
  Losses
Food Utilization
Food Utilization
 Nutrition Quality (Biofortification)
 Nutrition Quality (Biofortification)
CURRENT STATUS OF FOOD SECURITY IN THE
                   REGION
• Ensure food security for the 578 million people already
  hungry today in Asia and the Pacific

• Increase food production for additional 1.1 billion people
  living in 2050

• Food production has to be increased by 77 percent in
  developing countries by 2050 to ensure physical
  availability

• In the developing countries, 80% of the higher yield
  should come from productivity growth, increasing
  cropping intensity and only 20 % from land expansion
Current status of food security in the region
                    (cont’d)

• Gains from Green Revolution are increasingly at risks
  and crop productivity growth in this region has been
  sluggish

• Limited scope for irrigation expansion and increasing
  uses of water and agricultural lands for other purposes

• Very limited opportunity to increase arable lands

• In turn, this adds urgency to the need to improve crop
  productivity
Trends
Food Security
•   Food security remains elusive to millions
•   Micronutrient deficiencies are widespread
•   Slow progress towards the MDG1 target


Crop productivity
•   Yield growth has slowed down to around 40% of what
    achieved during the Green Revolution
•   The rate of increase in rice and wheat production is still
    well below that of population
•   Poor performance of pulses
Emerging Issues
Population growth and demographic transition
- More people in urban areas than rural areas in 2050
- People aging 65 and above- 857 million in 2050 from 207
    million 2007 (United Nations, 2001)
- Feminization of agriculture in rural Asia

Water Scarcity and Water Quality
- Water resources are becoming scarcer in Asia
- Overdrawing of ground water has depleted aquifers
- Intrusion of salt water due to rising of sea levels
Emerging Issues (cont’d)
Climate change and vulnerability
- Agriculture and food systems are likely to remain vulnerable
- Drops in yields of rice and wheat critical for regional food
  security

Biofuels
- Competition for land and water between food and biofuels
   productions

Under-investment in Agriculture
- Sharp decline of share of agriculture in ODA
- Decline of agricultural budget in developing countries
- Many governments unable to compensate by allocating more
  of their own resources
Where do the Hungry Live ?




Source: The State of Food Insecurity in the World, FAO (2009)..
Jeffrey Sachs. 2005. The end of Poverty. Penguin
Food Price Crisis
Percentage change, 2006-2008




                               Source: The State of Food Insecurity in the World, FAO (2009).
Low Income Food Deficit Countries (LIFDC), FAO)




                   Courtesy: Michael Sheinkman, WFP, Thailand
Prevalence of Undernourished (MDG indicator)
Food Security: geographic connectivity

 Conceptualization of the inter-relationships between Food
    Supply and Demand at regional and global levels --
                        Distribution




                           ASEAN


                        ASIA-PACIFIC


                   EUROPE & AMERICAS



                  Global Food Supply Chain
CONSEQUENCE ------
   Social unrest and food protests, some violent, have flared
  in countries around the globe
   Poor are hardest hit by rising prices.
   850 million people worldwide going hungry
   Millions more now are being pushed below the one-
  dollar-a-day poverty level
Global Climate Change
                                  Sea level rise
Increase salinity intrusion
                                    Increase evaporation
                              Drought         Decreasing precipitation in dry season

                                                       Increase snow melt in the Himalayas

                                                          Increase precipitation in monsoon

                                        Increase flood intensity
                                                                       Prolonged monsoon

                                                   Submergence of coastal areas




                                                                       Impact on agriculture
Effect of Climate Change

Flash flood affected   Ayla Affected people in Southern
   Farmers field              part of Bangladesh
Climate Change Adaptation”
                   We need~~~~

• Trait improvement:
    Heat and drought tolerance (Drought-tolerant maize)
    Waterlogging tolerance
    Frost, pest and disease resistance
    Water-use efficiency (e.g. Water-efficient Maize for Africa)
    Nutrient-use efficiency
    Early vigor
    Reduced dependence on low temperatures to trigger
    flowering or seed germination
• Reducing water loss from agriculture: Less ploughing
  means trapping moisture
Major Problems of Rice Agriculture

   Abiotic stress   Biotic stress   Socioeconomics

   Submergence        Disease       Marketing
   Salinity
                      Insect         Resource
   Drought                          constraints
                      Weed
   Temperature
                                    Knowledge gap
   Soil fertility




      Post harvest Loss, Yield Gap
The Race to Feed the World
          We are producing more food per person

• Scientists & policymakers pursue a goal of food
  security, the guarantee of an adequate and reliable food
  supply for all people at all times
   —Devote more fossil fuel energy to agriculture
   —Plant and harvest more frequently
   —Increase the use of irrigation, fertilizer, and pesticides
   —Increase the amount of cultivated land
   —Develop more productive crop and livestock varieties
The Race to Feed the World
We face undernourishment, over nutrition, and malnutrition
• Undernourishment in developing countries – an economic problem
  (low incomes… half the world population lives on < $2/day). About a
  billion undernourished people. 31 million Americans are “food
  insecure”
• Overnutrition in developed nations – abundance of food, cheap
  junk food, sedentary lifestyles
• Malnutrition – shortage of nutrients the body needs. Can affect
  both undernourished and overnourished individuals
The Race to Feed the World
      The “green revolution” boosted agricultural production
•   The desire for greater quantity & “… A temporary success in man’s war
    quality of food led in the mid-   against hunger and deprivation.”
    and late-20 century to the
                 th

    green revolution
•   In the 1940s Norman Borlaug
    introduced a special strain of
    wheat to Mexico, which soon
    tripled wheat production
•   Other developing nations
    followed – India, Pakistan, etc.
    (saved India from famine in
    1970s)
•   Grain production per person has decreased 9% since 1985 (varies by region)
•   Nearly all the planet’s arable land has been claimed
•   There is no guarantee that food production will continue to outpace
    population growth
Green revolution (1960-1970)
Green revolution leads to greatly increased crop yields
based on the incorporation of dwarfing genes discovered by
Norman Borlaug and the widespread use of agrochemicals
• Three-step green revolution
  – Selectively bred monocultures
  – High yields through high inputs – fertilizer, pesticides,
    and water
  – Multiple cropping


• Second green revolution – fast-growing dwarf
  varieties of wheat and rice

• Past 50 years – world grain production tripled
A Revolution in Biology


  1953 – DNA structure
 • 1970s – rDNA technology
 • 1980s – Metabolic
   engineering
 • 1990s – Genomics
 • 21st Century – “Systems”
   biology (post-genome biology)




Biology and Computing
are being integrated to achieve a
Predictive Understanding of living
systems
Agri Biotech era includes following
technologies
 GMOS (Seeds)
 Plant Tissue Culture
 Plant Based Phyto
 Phyto-chemicals
 Algae Farming
 Biofertilizers
 Biopesticides
 Mushroom Farming
 Animal /Plant (ELISA KITS)
 Biofuels
Flavr Savr Tomato

           Antisense RNA against
           the enzyme activity
           developed to inhibit the
           synthesis of the enzyme
           and delayed the fruit
           ripening of tomato by GM
           technology. These tomato
           have longer shelf life
           called as “FLAVR SAVR
           TOMATO”
Nuclear Applications for Food Security
Crop Improvement by Mutation Techniques
• Evolutionary variation has been used as the basis
for selection since the beginning of agriculture
• Spontaneous mutation rates causing genetic
variation in living organisms are low
• Radiation significantly increases mutation rates
• Induced mutants are not genetically modified
organisms, as there is no introduction of foreign
hereditary material
• Induced mutation has accelerated traditional
plant breeding as the basis of crop improvement
Radiation (mutation induction) is used to produce-
   • Improved high-yielding plants
   • Adaptable to harsh climate (Drought or flood)
   • Resistant to diseases and insect pests

Mutation technique is
          Safe
          Proven (Since the 1920s)
          Cost-effective

 To provide sustainable, long-term solutions, we must
make use of all available resources

  Nuclear research is urging a revival of nuclear crop
breeding technologies to help tackle world hunger
Soil-Water-Crop Nutrition Management

• Isotopes can be used as tracers in soil and water
management and crop nutrition

• Isotopes can be used to develop cost-effective soil-
water management technologies to enhance soil quality
and fertilizer/water use efficiency, for example:

 Biological nitrogen fixation (N-15)
 Nutrient use efficiency (N-15, P-32 and S-35)
 Greenhouse gas (CH4, CO2 and N2O) emissions
(C-13, C-14 and N-15)
 Soil carbon sequestration (C-13, C-14 and N-15)
 Water use efficiency (O-18, C-13)
Insect Pest Control by Sterile Insect Technique

• Radiation is used to induce lethal mutations in
chromosomes of insect pests to cause sterility
• Sterile males are released into the field where they
compete with wild males and mate with wild females

• SIT relies on:
     Mass production of the target pest
     Sterilization and shipment
     Systematic releases mostly by air
     Mating results in no offspring

• SIT integrated with other pest control methods is applied
for pest suppression, containment, or eradication
Improving Food Safety by Irradiation

• 5,000 deaths and 325,000 hospitalizations a year in USA
due to food-borne illness
• Irradiation at appropriate doses can kill harmful bacteria,
parasites, pests, and extend the shelf-life of foods
• More than 55 countries permit the application of irradiation
• An estimated 500,000 tons of foods are treated annually in
180 Cobalt-60 and a dozen electron beam facilities
worldwide
• Increased acceptance of irradiation as a plant quarantine
measure
Improving Food Safety by Control of Food Hazards

• Ensuring that the food supply is safe, traceable and
authentic:
        Developing analytical traceability systems to
   determine product origin/authenticity and ensure food
   safety
      Detecting contaminants by radioassay and isotope
   dilution assay
     Optimizing sample preparation using radioisotopes
     Radioisotopes for metabolic/transfer studies

• Procedures to control food-borne hazards developed and
      transferred to Member States

• Leading to the improvement of overall food security, food
      safety and an increase in international trade
Mutation
    techniques
- Improving crop cultivars

  - Enhancing biodiversity

    - Increasing farmer’s income
Spontaneous mutation the motor of
evolution
Unmasking Hidden Potential in Plants
  • Height of a plant
  • Yield
  • Susceptibility or resistance to disease

All of these possibilities are written into a plant´s blueprint,
its Genome, but only a few are expressed

Plant need a long period of time to adapt itself to different
conditions through a process of spontaneous mutation and
natural selection
Shall we live millions of years and survey billions of hectares
         (acres) of land with 100 percent precision?



We would find variants with all of the traits we´re looking for
but which have mutated naturally

But we can´t wait millions of years to find the plants that are
necessary now, if we want to feed the world. So with induced
mutation, we are actively speeding up the process



Today, scientists apply mutagens - for example Gamma rays or chemicals - to
accelerate the process
PLANT BIOTECHNOLOGY
Offers several possibilities for increasing
         Productivity
         Diversification
         Production
For developing a more sustainable agriculture
Plant biotechnology includes
    Genomic analysis
    Breeding and plant-disease diagnoses
    Plant tissue culture techniques
     Use of advanced molecular biology techniques for plant
     transformation
    Biopesticide production


  Effective instrument to mitigate consequences of climatic
      change
  Offer cropping alternatives in lands degraded by erosion
      and desertification or by careless agricultural use
Induced mutation simply accelerates
   Natural process of spontaneous changes occurring in
 plants

    Exposure to radiation changes a plant´s blueprint at
 one position in the genetic code, creating a variant that is
 different from the parent plant

   Huge numbers of mutants are produced in the search
 for desired traits - perhaps a resistance to certain
 diseases or pests, or an ability to thrive in saline soil or
 drought conditions
Induced mutation – a short course for high
     Induced mutation – a short course for high
                            level management
                             level management

         Radiation
         (mutagenic
         treatment)



Mo
Mo
(’000)
                                M11
                                M
                                (’000)                   (10,000-’
                                                         00,000)
                                                                            M2
               mutation
             (after mutagenic
                treatment)

                                                                          (segregating population)
  AA                            Aa                               AA                Aa                aa
   bb                           bb                         1
                                         (self-fertilization)
                                                                     bb     :2      bb     :1        bb
  CC                            CC                               CC                CC            CC
                                                                                                mutant
- New variety
                                   - Prebreeding
                           sd
                         mutant




Mutagenic                                   M4
treatment




   M0       M1            M2           M3
             Mutated generations
Chimerism of M1 plants

     Parent cultivar                           Mutagenic treatment
            seeds                                Radiation
   (multicellular embryo
     meristem, leaf etc.)
                            Mo                   Chemical mutagenesis
                                                 Insertional mutagenesis
                                 (embryo)



                                                            M2 seeds
     M1
                                               (meiosis)
                 (embryo)        (M1 plant,
                                 chimera)

                            Segregating M2 population
   (Selection on single plant basis)
                                                            M3
Handling of mutants

                  Segregating M2 population

     Segregating M3                            M3 - Homozygosity test of
       population                              putative mutants selected in M2
  (Selection of mutants among lines
  derived from individual M2 plants)
                                          M4 - Homozygosity test of selected
 M4 - Homozygosity test of selected         mutants, preliminary evaluation,
  mutants, preliminary evaluation,
                                                  seed multiplication
       seed multiplication

                               Selection M5 - Mn
  Cross-breeding              Multilocation trials         Cross-breeding
                               Direct release
Modern Plant Breeding
• Modern crop varieties contribute ~40% to the
  yield increase during last half century
• Plant breeders make use of genetic
  variability for developing new varieties
• Generating genetic variability:
  (1) exists in (agro-)biodiversity (e.g.
  preserved landraces, related wild species)
  (2) induced using nuclear techniques
  (3) transferred among different species by
  transgenics
Plant Breeding Methods
Modern plant breeding, based on the means of generating
genetic variability, is classified into:
Cross breeding: the key component is “cross” [between
commercial varieties and/or landraces] and “selection”;
the end products are recombinants of existing alleles. The
potential is mostly explored by prospection (spontaneous
mutations).
Mutation Breeding: Generating new gene alleles not
existing in the germplasm; or improving a few key traits in
a otherwise excellent variety (induced mutations). No
GMO, no intellectual property (IP) issues.
Transgenic breeding: Adding foreign genes into a
commercial variety. GMO, IP issues (monopoly of new
varieties)
Mutation Assisted Breeding
              Strategies
                                          elite mutant
                                          + agronomic value
elite                                     + resistance
+ agronomic value   pre-breeding mutant
- resistance        +/- agronomic value
                    + resistance



agronomic value:
   •yield                      (agro)biodiversity
   •quality                    - agronomic value
   •adaptability               + resistance
   •a.o.
Phenotype gap –combining mutagenesis and genomics
     Phenotype gap –combining mutagenesis and genomics

To obtain the full range of phenotypes we need to increase
To obtain the full range of phenotypes we need to increase
    both the breadth and depth of the mutant resources
     both the breadth and depth of the mutant resources



                                             breadth
                                               Mining
       Mining            Tool:                 new loci
       new              induced
       alleles in
                       mutations                Mutation
       known                            Approach:   grid
       loci                              mutational
                                          analysis
     depth                        Deletion lines
Gene Finding & Function Analysis Strategies

                Gain of function


                                              high-throughput
 - Resistance                                molecular screening
                              + Resistance    HAPPY-mapping
                                                DNA-chips
                                                TILLING
                Loss of function                  SAGE
                                                  DArT
                                                     ...
                              - Resistance
 + Resistance
Crop improvement by mutation techniques


             No mutation
                                   Mutant cultivars
             Negative mutation
                           -   Higher yielding
                           -   Disease resistant
                           -   Environmental stress tolerant
                           -   Climate resilient
                           -   Well adapted
                           -   Better nutrition/quality
Pathway reconstruction
                          Gene network interactions
                              Output Z                                            Output ?
                                                                     ?≡Z
                                                                     ?≠Ζ




                                    Mutation
Positive interaction                 Preserved interaction
Negative interaction                 Not preserved interaction
                                     Reversed sign of interaction
                                     New interaction
                                                                    modified from Ralph J. Greenspan (2001)
Mutagenesis meets Genomics
       Pathway reconstruction

Reference, tester      Mutant




                            modified from
Mutant Varieties




2012: 3218 officially released mutant varieties
  worldwide from 214 different plant species

More than 80% mutant varieties have
 been developed by using nuclear
 techniques
Selection of Herbicide Tolerant Mutants




Field and screenhouse set-up of herbicide   Mutants and WT at one week after herbicide
                                            spraying: WT are placed in both ends of seed box for
screening                                   the replicated set-up and for M2 and M3 set-up,
                                            additional line of WT was placed in the middle.

  •53 mutant lines of NSIC Rc156 and NSIC Rc144 with a
  total of 339 individual plants survived and were seed
  increased.
  •For mass screening of NSIC Rc218 SR mutant lines, 43
  M3 and 108 M2 plants were selected.
Selection of Tungro Resistant Mutants




Pictures above show        tungro reactions of a) ARC-resistant check b) TN1-
susceptible check ; c) NSIC Rc218 –WT; d)NSIC Rc218-M2; e) NSIC Rc144-WT
and NSIC Rc144-3-16-3. From above right, control checks reaction against tungro
virus and from below left transplanted R and I plants for seed increase.
Selection of Bacterial Blight Resistant Mutants




 Inoculation of plants at 35
 DAT using clip method


                               IR24: S check   IRBB21: R check   Mutant entry :MR


   24 plants from an original mutant line exhibited resistant
   reaction (<10cm lesion length). The susceptible check (IR24)
   exhibited an average lesion length of 28.2cm while the wild
   type wild type (NSIC Rc144) has 23.5cm lesion length
Drought field screening
Response of popular varieties to drought stress




 PSB          PSB Rc14     PSB Rc82    PSB Rc82
 Rc14




PSB Rc18       PSB         NSIC        NSIC
               Rc18        Rc146       Rc146
BREEDING FOR ULTRA-EARLY MATURING
              RICE VARIETIES




Varieties NSIC Rc134 and PSB Rc10 with ion beam treatments,
40 and 250 Gy, have been evaluated in the field. Generally the
mutants were phenotypically better than the parent varieties in
terms of reactions to BLB. Early maturity with slow senescence
rate was observed in the 250 Gy treatment
Y DAM DO (orig) - clustered




                                                          Y DAM DO (orig)    SCRL-2008DS-269       SCRL-2008DS-266   SCRL-2008DS-271
                                                         (b)

                 SCRL-2008DS-271 - clustered



                  SCRL-2008DS-277 - heavy


                                                           Y DAM DO            SCRL-           SCRL-2008DS-      SCRL-     SCRL-2008DS-
  (a)              SCRL-2008DS-263 - light               (c) (ORIG)         2008DS-269             266        2008DS-271       271

  SCDL: Variations in panicle (a), grain size and shape (b), and kernel quality of lines from YDAMDO




variations in panicle (a), grain size & shape (b), and   variations in grain size &shape, and absence of awn
kernel quality ofJepun                                   observed among the lines from Nerica 2
Mutant varieties / lines
              developed
Rice
• PSB Rc78 (Pampanga): derived from Sigadis
  Milagrosa , gamma Co 60 source at 25 kR, an
  aromatic irrigated lowland variety
• NSIC Rc130 (Tubigan 3) – anther culture-derived,
  very early maturing irrigated lowland variety
• Anther-culture derived varieties for saline areas
           NSIC Rc186 (Salinas 3)
           NSIC Rc188 (Salinas 4)
           NSIC 2011 Rc290 Salinas 6
           NSIC 2011 Rc292 Salinas 7
           NSIC 2011 Rc294 Salinas 8
Production of Mutant Populations and Selection
of Mutant Lines with Improved Traits


Four mutant lines derived from NSIC
Rc144 and NSIC Rc156 gave a yield
range of 9.1-13.52 tons/ha with yield
advantage of 131.72-195.35 % over
yield checks (PSB Rc82 & NSIC Rc222)
and their respective wild types.
DEVELOPMENT OF LOW PHYTIC ACID (LPA)
                 RICE:
         PROGRESS AND PROSPECT

Two lpa mutants (Os-lpa-MH86 and Os-lpa-XQZ), wild types, and
associated molecular markers for lpa, were obtained from Zhejiang
University, China. Initial morpho-agronomic traits evaluated at
PhilRice Nueva Ecija revealed that Os-lpa-MH86 has good tillering
ability, plant height and dense spikelets compared to Os-lpa-XQZ.
Hybridization was conducted using these mutants with NSIC Rc160
to develop segregating populations for genetic and molecular marker
analysis.
Phytic acid (myo-inositol-1,2,3,4,5,6-Hexakisphosphate) is the seed
phosphorus storage compound needed for the germination of legumes and
grains including rice. It is known for its anti-cancer and antioxidant
properties and is located in globoids in the rice bran and germ. However, it
also binds minerals and significantly lower iron absorption when one
consumes rice as “brown rice.”
Holistic Food Safety Systems “farm to fork”
NOTABLE AND SUSTAINABLE IMPACTS

Research   for   development     activities   have   delivered
continuous results that have improved livelihoods and food
security while helping to protect the environment


        Improved agricultural productivity

        Higher incomes

        More sustainable use of natural resources

        Facilitated growth in agricultural trade

        Promoted applications of nuclear technology
Success Stories of Nuclear Research
        In Different Parts of World
  Improved crop varieties: High yielding, disease and
insect resistant leading to higher economic returns

  Combating water scarcity and soil salinization through
       managing     and     conserving     irrigation
waterapplication of integrated salinity management
practices

  Diagnostic capacity building for animal diseases

  Fruit fly control: Implementation of area-wide fruit fly
management programmes, which include an SIT
component
  Upgrading Food Analysis Laboratories
Scenario of various stresses in Bangladesh
Salinity:
  In Bangladesh, there are 1.02 million hectares of
cultivable land affected by soil salinity ranging 2.0 to > 16.0
dS/m
  The coastal areas of Bangladesh cover more than 30% of
the cultivable lands of the country
  About 53% of the coastal areas are affected by salinity
 Agricultural land use in these areas is very poor, which is
much lower than country’s average cropping intensity
  Salinity causes unfavorable environment and
hydrological situation that restrict the normal crop
production throughout the year
Salinity Problem
                                                       World wide, salt affected
                                                       areas = 400 – 950 m. ha
                                                       (Lin et al., 1998).
                           170 x 106 ha
                             Russia
8.5 x 106 ha                                           In Asia, only rice lands =
                                   37 China
   USA                                                 54 m.ha
                              11          13 x 106ha
                            Pakist        Indonesia     Bangladesh: 2.8 m.ha
                              an 24
   21 x 106 ha                                           Another 9.5 m. ha of
   Paraguay      86 x 10 ha
                        6   11 India x 106 ha
                                x 357                  saline soil => managed by
    9 x 106
                 Argentina 10 ha Australia
                              6

      ha                    Ethio                      irrigation drainage and by
    Chile                    pia                       chemical treatment….i.e.,
                                                        too costly.
                                                        Need salt tolerance
                                                        varieties.
Challenges in coastal saline areas
• Saline area in 1973 =0.833 mha
• Saline area in 2000 = 1.02 mha

• Saline area in 2012 = 2.80 mha
Soil Salinity
Map 2009




 Legend
        2009
      2000
      1973
Coastal zone
• About 2 M ha for rice

• 25-60 cm H 2 O stagnation

• EC 6-12 dS/m (soil and
  water)

• Improving the
  productivity
Submergence:
   Submergence areas
cover about 15% of
total cultivable land
which are tidal flood,
flash flood and flood
  Flash floods
accounts for More than
2.0 mha areas of
Bangladesh by
                         Flood: Mymensingh District, 2011
different grades
Flash floods
 regularly affect
 rainfed lowland rice
 (RLR) ecosystems
 where flood water
 remains for around
 three weeks in many
 parts of the country

 Up to 100% yield losses may occur due to Flash floods
depending upon different factors of submergence prone
ecosystem
>2.0 million hectare
rice areas are affected
by flash flood during T.
Aman season

T. Aman rice often gets
submerged          during
vegetative stages for
around      2      weeks
incurring yield loss

Submergence tolerant
high     yielding    rice
varieties   along   with
production      packages
are required for this
unfavorable ecosystem
Drought:
   More than 2.0 million
hectares of cropped land are
affected by drought during
both dry (upland) and wet (T.
Aman) seasons.
   Drought resistance in rice
is a complex trait controlled
by different root and shoot
characters and physico-
chemical activities at
different stages of growth
Drought
•It is very difficult to
screen rice variety
for complete drought
resistance
• Varieties with
moderate resistance
under moderately
rainfall areas are
emphasized
• Around 2.0 mha rice area are affected by drought
  in RLR and upland ecosystem
• Early drought in T. Aman hampers crop
  establishment, delays transplanting, reduces yield.
• Terminal drought in T. Aman season affect the
  reproductive phase, causes sterility, partial grain
  filling and reduced yield.
• Early rice varieties escape drought.
• BINA needs genetically drought resistant varieties
Sl.        Stress    Area            Varieties
No                  (Mha)

1     Salinity       2.0    BR23, BRRI dhan40, BRRI
                            dhan41, BRRI dhan47, BRRI
                            dhan53, BRRI dhan54, BINA
                            dhan8 and BINA dhan10

2     Submergence   >2.0    BRRI dhan51, BRRI dhan52,
                            Ciherang-sub1 (proposed
                            BINA dhan11) and Samba
                            Mahsuri-sub1 (proposed
                            BINA dhan12)
3     Drought        2.0    BR24, BRRI dhan42, BRRI
                            dhan43 (upland ecosystem),
                            BRRI dhan56, BRRI dhan57,
                            NERICA mutants
Variety released By the peaceful use of Nuclear
energy


         Crop               Number
         Rice                 10
         Jute                  2
         Oilseed              16
         Pulse                22
         Vegetables            9
         Total                59
BINASARISHA-4
Released in 1997
High yielding
Duration : 80
Average yield: 1.9 t/ha
Short duration variety   BINADHAN-7
                              • Developed by irradiating seeds
                               of Tai Nguyen (a Vietnamese
                               variety) with 250 Gy dose of
 BINADHAN-7                    gamma-rays

                              • Released in 2007 for transplant
                               aman season

                              •     Most popular early maturing
                                  Transplant aman variety

                              • High yielding (Average 5.5-6.5
                                t/ha maximum 7.6 t/ha )

                              • Semi dwarf

                              • Erect and short culm

                              • Long slender bright grains
Salt Tolerant Rice Variety
                                       BINADHAN-8
       Salt cultivation
             field
                          Binadhan-8        Released in 2010
                                            Crop duration 130-135 days
                                            Salinity tolerance :
                                                Seedling stage: 12-14 dS/m
                                                Mature stage: 8-10 dS/m
                                            Suitable for cultivation in Boro,
                                         Aus and Aman season
                                            Yield:
                                            Boro: 4.5-5.5 t/ha in saline
                                         condition 8.0 t/ha in non-saline
                                         field
                                          Aman: 4.0 t/ha in saline
     Field demonstration of Binadhan-    condition 5 t/ha in normal
     8 in Bashkhali, Chittagong, Boro-   condition
     2010
Salt Tolerant Rice
                  Variety
               Binadhan-10
   Released in 2012
   Crop duration 125-130 days
   Salinity tolerance :
       Seedling stage: 12-14 dS/m
       Mature stage: 10-12 dS/m
   Suitable for cultivation in Boro, Aus
and Aman season
   Yield:
Boro: 5.0-5.5 t/ha in saline condition 8.5
t/ha in non-saline field
 Aman: 4.5 t/ha in saline condition 5.5
t/ha in normal condition
Salt Tolerant Rice Variety




Field evaluation of Binadhan-10, Dumuria, Khulna
                    Boro, 2012
Tikabunia, Dumuria, Khulna, boro, 2012

                                             Binadhan-10

                               Experimental field
Salt affected field




                                 Shrimp cultivation
Tikabunia, Dumuria, Khulna, boro, 2012




      Experimental field   Binadhan-10




Salt affected field
Tikabunia, Dumuria, Khulna, boro, 2012

                      Expt. field   Binadhan-10




Salt affected field
Shyamnagar, Satkhira


                          Fallow land



Shrimp Gher
Binadhan-7               Potato (Diamont)
   BINADHAN-7 (Aman)




Monga mitigation Model
for northern Bangladesh
BINA dhan7-Potato-
Maize

                                Maize
Irrigated Rice: Major yield loss factors
     HOW DOES CLIMATE CHANGE THE EFFECT OF THESE FACTORS
                   ON CROP YIELD AND LOSS?


Subtropics
Cold
Drought               Humid Tropics
K deficiency          Stemborer
P deficiency          Drought             Sub-humid tropics
N deficiency          Submergence         Weeds
Organic matter        Rice bugs           Stemborer
deficiency            BLB                 Bacterial leaf blight
Submergence           BPH                 Drought
Lodging               Bacterial blight    Blast
Sheath blight         Lodging             Gall midge
Blast                 Sulfur deficiency   Army worm
                      Zinc deficiency     Rodents
                                          Zinc deficiency
                                          Leaffolder
Yield losses in rice cultivation


•Stresses    Yield loss (as % of production)
________________________________
•Pest infestation       6.8
•Problem soils          6.4
•Water stresses         9.9
•Average loss          23.1
________________________________
Salinity screening at seedling stage




     THDB
    Pokkali                     NON-SALINIZED SETUP

 SALINIZED SETUP

12 dS/m
Salinized (EC 6dS/m)   Non-salinized

Salinity screening of genotypes for salt tolerance at the
reproductive stage
Fakirhat, Bagherhat, Boro, 2009-10




                                     Binadhan-8
                                      EC: 8 dS/m
Mongla, Bagherhat, Boro, 2009




              Binadhan-8
              EC: 9 dS/m
Shyamnagar, Satkhira, boro season, 03-11-2011




                          BRRI dhan28
                             (EC:7.5 dS/m)




     Binadhan-8
        (EC:7.5 dS/m)
Bashkhali, Chittagong, Boro 2010-2011, DAE
                (EC 10 dS/m)
New Salt Tolerant Rice Variety: Hope for the
                Coastal Farmers


           Binadhan-8                             BRRI dhan28
               (EC:8.0 dS/m)                          (EC:8.0 dS/m)




Demonstration of Binadhan-8, Munshiganj (near Sundarban, Shyamnagar,
Satkhira, 03-11-2011
Salt cultivation field




Demonstration of Binadhan-8 at Bashkhali, Chittagong, 2011-12 by DAE
Bashkhali, Chittagong, Boro 2010-2011, DAE
                (EC 10 dS/m)
Demonstration plot




             Shrimp
             culture
Shyamnagar, Satkhira


                          Fallow land



Shrimp Culture
Impact of salt tolerant rice varieties

•   BINAdhan-8 is being recognized as Mega
    Variety (released in 2010)
•   Suitable for Aus, Aman and Boro season
•   BINAdhan-8 and 10 are being cultivated in
    the salt affected areas (13 coastal districts)
•   40-50% fallow land of coastal saline area will
    be covered with these salt tolerant varieties
    and additional 4-5 million tones of rice could
    be produced
Submergence activities:
We have some recent success in submergence
research as we have two very promising lines-
 Ciherang-Sub1 (proposed Binadhan-11) and
 Samba Mahsuri-Sub1 (proposed Binadhan-12)
 Can survive under submerged condition, 25 days
 Growth duration (Normal condition: 125-130 days
and Submerged: 150-155 days) of Ciherang-Sub1 is
comparatively lower than Samba Mahsuri-Sub1
(Normal condition: 135-140 days and Submerged: 160-
165 days)
 Yield (4.0-4.5 t/ha)
 The field evaluation of two lines has already been done in boro
(dry) season 2011
Ciherang-sub1 (Proposed Binadhan-11)

       SCA Evaluation Team
Ciherang-sub1 (Proposed Binadhan-11)
Drought activities:
 In 2010, we collected three rice varieties New Rice
for Africa “NERICA” (NERICA-1, NERICA-4 and
NERICA-10) seed from BADC
 Irradiated them in different doses of Gamma
radiation (250 Gy, 300 Gy and 350 Gy) to create
variability.
These are now in M4 generation and are being
evaluation at BINA HQ farm.
Nano biotechnology
 Nano-Technology is one of the emerging interdisciplinary
fields which is about to bring a technological revolution. It
is a engineering at the atomic or molecular scale, deals
with devices typically less than 100 nanometers in size, or
                                                     size
one billionth of a meter, or one ten-thousandth the width of
a human hair
 Nanotechnology provides a new basis for innovation in
the life sciences, revolutionary biotechnology processes,
the synthesis of new drugs and their targeted delivery,
regenerative medicine, neuromorphic engineering stem
cell research, genomics, proteomics as well as the well-
established fields of agriculture, environmental
management, medical device manufacturing
“Food security exists when all people, at all
times, have physical and economic access to
sufficient, safe and nutritious food to meet their
dietary needs and food preferences for an active and
healthy life”
                        - World Food Summit, 1996


Food security is given the topmost priority in
Bangladesh. Side by side with domestic food
production, greater importance is given to ensure
access to adequate and safe food by all people at
all times for maintaining an active and healthy life.
Unlocking the Potential:
- National Strategy for Accelerated Poverty Reduction (PRSP)
Plant Biotechnology and Food Security

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Plant Biotechnology and Food Security

  • 1. 9th monthly SEMINAR of CARES – SAU Plant Biotechnology and Food Security: Prospects of Nuclear Research Dr. Mirza Mofazzal Islam Dr. Mirza Mofazzal Islam Principal Scientific Officer, Plant Breeding Division and Principal Scientific Officer, Plant Breeding Division and Head, Biotechnology Division Head, Biotechnology Division Bangladesh Institute of Nuclear Agriculture (BINA) Bangladesh Institute of Nuclear Agriculture (BINA) Mymensingh 2202 Mymensingh 2202 E-mail: mirza_islam@yahoo.com E-mail: mirza_islam@yahoo.com
  • 2. Bangladesh Institute of Nuclear Agriculture (BINA)
  • 3. Human population is rapidly outgrowing
  • 4. FOOD SECURITY Exists when all people, at all times, have physical, social and economic access to sufficient, safe and nutritious food that meets their dietary needs and food preferences for an active and healthy life.” (Food and Agriculture Organization, U.N.) Security for Whom? Individual Sufficiency Family Unit Safety (Households) Economic Access Communities Physical Access (Country) Nutrition Regions
  • 5. Source: Nanyang Technical University, Singapore Capture Aquaculture Fish Natural Ecosystems Animal Feed Poultry Biofuels 3. Access to Food Mammals (Income) 2. Other Uses Access to Food (Market Supply Chain) 1b.Availability (Food Supply) Distribution Demand for Household Food Production, Imports Food Security Stockpiles Urban Processing/ Food Security Distribution Losses Trade 4. Utility Safety/Quality/ Nutritive Value 1a. Availability Science/ (Primary Production) Technology Crops/Animals Inputs Sunshine 4 – Dimensional Food Labor Land Water Security Conceptual Model Population Increases Fragility of Agro-ecosystems Diet Diversification Climate Change Competition for Land Lifestyle Changes Changing Demographics Urbanization (e.g. fewer/ageing farmers)
  • 6. Why is food a security issue? DRIVERS CAUSES SYMPTOMS Food Globalization Shortages Deterioration of Health Deterioration of Nutrition Food Price Increases Hunger Food Loss of Life Conflict Insecurity Civil Unrest Poverty Food Economic Instability Hoarding Political Instability Climate Change Food Contamination Social Instability
  • 7. Main Threats to Food Security Food Availability Production Imports Stockpiles Chronic Food Security Transitory Food Security Food Access (Physical) • Demographic changes • Weather disruptions and Access to markets • Poverty pest outbreaks Infrastructure • Underinvestment in • Rising energy prices infrastructure/tech. • Competition from energy Food Access (Economic) • Climate change sector Employment • Fragility of agro- • Policy changes e.g. trade Overseas Remittances ecosystems • Lower holdings of cereal Foreign Direct Investment • Unfriendly policies stocks Trade towards • Diversion from staple to farmers cash Food Utilization • Declining no. of farmers crops Health and nutrition • Globalisation • Conflict/Terrorist activities Sanitation/Hygiene • Economic factors Storage/processing facilities Clean water Four Dimensions of Food Security
  • 8. Biotechnology links to Food Security Food Availability Food Availability Production Production Losses Losses Climate Change (CC) Climate Change (CC) Food Distribution Food Distribution Losses Losses Food Utilization Food Utilization Nutrition Quality (Biofortification) Nutrition Quality (Biofortification)
  • 9. CURRENT STATUS OF FOOD SECURITY IN THE REGION • Ensure food security for the 578 million people already hungry today in Asia and the Pacific • Increase food production for additional 1.1 billion people living in 2050 • Food production has to be increased by 77 percent in developing countries by 2050 to ensure physical availability • In the developing countries, 80% of the higher yield should come from productivity growth, increasing cropping intensity and only 20 % from land expansion
  • 10. Current status of food security in the region (cont’d) • Gains from Green Revolution are increasingly at risks and crop productivity growth in this region has been sluggish • Limited scope for irrigation expansion and increasing uses of water and agricultural lands for other purposes • Very limited opportunity to increase arable lands • In turn, this adds urgency to the need to improve crop productivity
  • 11. Trends Food Security • Food security remains elusive to millions • Micronutrient deficiencies are widespread • Slow progress towards the MDG1 target Crop productivity • Yield growth has slowed down to around 40% of what achieved during the Green Revolution • The rate of increase in rice and wheat production is still well below that of population • Poor performance of pulses
  • 12. Emerging Issues Population growth and demographic transition - More people in urban areas than rural areas in 2050 - People aging 65 and above- 857 million in 2050 from 207 million 2007 (United Nations, 2001) - Feminization of agriculture in rural Asia Water Scarcity and Water Quality - Water resources are becoming scarcer in Asia - Overdrawing of ground water has depleted aquifers - Intrusion of salt water due to rising of sea levels
  • 13. Emerging Issues (cont’d) Climate change and vulnerability - Agriculture and food systems are likely to remain vulnerable - Drops in yields of rice and wheat critical for regional food security Biofuels - Competition for land and water between food and biofuels productions Under-investment in Agriculture - Sharp decline of share of agriculture in ODA - Decline of agricultural budget in developing countries - Many governments unable to compensate by allocating more of their own resources
  • 14. Where do the Hungry Live ? Source: The State of Food Insecurity in the World, FAO (2009)..
  • 15. Jeffrey Sachs. 2005. The end of Poverty. Penguin
  • 16. Food Price Crisis Percentage change, 2006-2008 Source: The State of Food Insecurity in the World, FAO (2009).
  • 17. Low Income Food Deficit Countries (LIFDC), FAO) Courtesy: Michael Sheinkman, WFP, Thailand
  • 18. Prevalence of Undernourished (MDG indicator)
  • 19. Food Security: geographic connectivity Conceptualization of the inter-relationships between Food Supply and Demand at regional and global levels -- Distribution ASEAN ASIA-PACIFIC EUROPE & AMERICAS Global Food Supply Chain
  • 20. CONSEQUENCE ------  Social unrest and food protests, some violent, have flared in countries around the globe  Poor are hardest hit by rising prices.  850 million people worldwide going hungry  Millions more now are being pushed below the one- dollar-a-day poverty level
  • 21. Global Climate Change Sea level rise Increase salinity intrusion Increase evaporation Drought Decreasing precipitation in dry season Increase snow melt in the Himalayas Increase precipitation in monsoon Increase flood intensity Prolonged monsoon Submergence of coastal areas Impact on agriculture
  • 22. Effect of Climate Change Flash flood affected Ayla Affected people in Southern Farmers field part of Bangladesh
  • 23. Climate Change Adaptation” We need~~~~ • Trait improvement: Heat and drought tolerance (Drought-tolerant maize) Waterlogging tolerance Frost, pest and disease resistance Water-use efficiency (e.g. Water-efficient Maize for Africa) Nutrient-use efficiency Early vigor Reduced dependence on low temperatures to trigger flowering or seed germination • Reducing water loss from agriculture: Less ploughing means trapping moisture
  • 24. Major Problems of Rice Agriculture Abiotic stress Biotic stress Socioeconomics Submergence Disease Marketing Salinity Insect Resource Drought constraints Weed Temperature Knowledge gap Soil fertility Post harvest Loss, Yield Gap
  • 25. The Race to Feed the World We are producing more food per person • Scientists & policymakers pursue a goal of food security, the guarantee of an adequate and reliable food supply for all people at all times —Devote more fossil fuel energy to agriculture —Plant and harvest more frequently —Increase the use of irrigation, fertilizer, and pesticides —Increase the amount of cultivated land —Develop more productive crop and livestock varieties
  • 26. The Race to Feed the World We face undernourishment, over nutrition, and malnutrition • Undernourishment in developing countries – an economic problem (low incomes… half the world population lives on < $2/day). About a billion undernourished people. 31 million Americans are “food insecure” • Overnutrition in developed nations – abundance of food, cheap junk food, sedentary lifestyles • Malnutrition – shortage of nutrients the body needs. Can affect both undernourished and overnourished individuals
  • 27. The Race to Feed the World The “green revolution” boosted agricultural production • The desire for greater quantity & “… A temporary success in man’s war quality of food led in the mid- against hunger and deprivation.” and late-20 century to the th green revolution • In the 1940s Norman Borlaug introduced a special strain of wheat to Mexico, which soon tripled wheat production • Other developing nations followed – India, Pakistan, etc. (saved India from famine in 1970s) • Grain production per person has decreased 9% since 1985 (varies by region) • Nearly all the planet’s arable land has been claimed • There is no guarantee that food production will continue to outpace population growth
  • 28. Green revolution (1960-1970) Green revolution leads to greatly increased crop yields based on the incorporation of dwarfing genes discovered by Norman Borlaug and the widespread use of agrochemicals
  • 29. • Three-step green revolution – Selectively bred monocultures – High yields through high inputs – fertilizer, pesticides, and water – Multiple cropping • Second green revolution – fast-growing dwarf varieties of wheat and rice • Past 50 years – world grain production tripled
  • 30. A Revolution in Biology 1953 – DNA structure • 1970s – rDNA technology • 1980s – Metabolic engineering • 1990s – Genomics • 21st Century – “Systems” biology (post-genome biology) Biology and Computing are being integrated to achieve a Predictive Understanding of living systems
  • 31. Agri Biotech era includes following technologies GMOS (Seeds) Plant Tissue Culture Plant Based Phyto Phyto-chemicals Algae Farming Biofertilizers Biopesticides Mushroom Farming Animal /Plant (ELISA KITS) Biofuels
  • 32. Flavr Savr Tomato Antisense RNA against the enzyme activity developed to inhibit the synthesis of the enzyme and delayed the fruit ripening of tomato by GM technology. These tomato have longer shelf life called as “FLAVR SAVR TOMATO”
  • 33. Nuclear Applications for Food Security
  • 34. Crop Improvement by Mutation Techniques • Evolutionary variation has been used as the basis for selection since the beginning of agriculture • Spontaneous mutation rates causing genetic variation in living organisms are low • Radiation significantly increases mutation rates • Induced mutants are not genetically modified organisms, as there is no introduction of foreign hereditary material • Induced mutation has accelerated traditional plant breeding as the basis of crop improvement
  • 35. Radiation (mutation induction) is used to produce- • Improved high-yielding plants • Adaptable to harsh climate (Drought or flood) • Resistant to diseases and insect pests Mutation technique is  Safe  Proven (Since the 1920s)  Cost-effective To provide sustainable, long-term solutions, we must make use of all available resources Nuclear research is urging a revival of nuclear crop breeding technologies to help tackle world hunger
  • 36. Soil-Water-Crop Nutrition Management • Isotopes can be used as tracers in soil and water management and crop nutrition • Isotopes can be used to develop cost-effective soil- water management technologies to enhance soil quality and fertilizer/water use efficiency, for example:  Biological nitrogen fixation (N-15)  Nutrient use efficiency (N-15, P-32 and S-35)  Greenhouse gas (CH4, CO2 and N2O) emissions (C-13, C-14 and N-15)  Soil carbon sequestration (C-13, C-14 and N-15)  Water use efficiency (O-18, C-13)
  • 37. Insect Pest Control by Sterile Insect Technique • Radiation is used to induce lethal mutations in chromosomes of insect pests to cause sterility • Sterile males are released into the field where they compete with wild males and mate with wild females • SIT relies on:  Mass production of the target pest  Sterilization and shipment  Systematic releases mostly by air  Mating results in no offspring • SIT integrated with other pest control methods is applied for pest suppression, containment, or eradication
  • 38. Improving Food Safety by Irradiation • 5,000 deaths and 325,000 hospitalizations a year in USA due to food-borne illness • Irradiation at appropriate doses can kill harmful bacteria, parasites, pests, and extend the shelf-life of foods • More than 55 countries permit the application of irradiation • An estimated 500,000 tons of foods are treated annually in 180 Cobalt-60 and a dozen electron beam facilities worldwide • Increased acceptance of irradiation as a plant quarantine measure
  • 39. Improving Food Safety by Control of Food Hazards • Ensuring that the food supply is safe, traceable and authentic: Developing analytical traceability systems to determine product origin/authenticity and ensure food safety Detecting contaminants by radioassay and isotope dilution assay Optimizing sample preparation using radioisotopes Radioisotopes for metabolic/transfer studies • Procedures to control food-borne hazards developed and transferred to Member States • Leading to the improvement of overall food security, food safety and an increase in international trade
  • 40. Mutation techniques - Improving crop cultivars - Enhancing biodiversity - Increasing farmer’s income
  • 41. Spontaneous mutation the motor of evolution Unmasking Hidden Potential in Plants • Height of a plant • Yield • Susceptibility or resistance to disease All of these possibilities are written into a plant´s blueprint, its Genome, but only a few are expressed Plant need a long period of time to adapt itself to different conditions through a process of spontaneous mutation and natural selection
  • 42. Shall we live millions of years and survey billions of hectares (acres) of land with 100 percent precision? We would find variants with all of the traits we´re looking for but which have mutated naturally But we can´t wait millions of years to find the plants that are necessary now, if we want to feed the world. So with induced mutation, we are actively speeding up the process Today, scientists apply mutagens - for example Gamma rays or chemicals - to accelerate the process
  • 43. PLANT BIOTECHNOLOGY Offers several possibilities for increasing Productivity Diversification Production For developing a more sustainable agriculture Plant biotechnology includes Genomic analysis Breeding and plant-disease diagnoses Plant tissue culture techniques Use of advanced molecular biology techniques for plant transformation  Biopesticide production Effective instrument to mitigate consequences of climatic change Offer cropping alternatives in lands degraded by erosion and desertification or by careless agricultural use
  • 44. Induced mutation simply accelerates Natural process of spontaneous changes occurring in plants Exposure to radiation changes a plant´s blueprint at one position in the genetic code, creating a variant that is different from the parent plant Huge numbers of mutants are produced in the search for desired traits - perhaps a resistance to certain diseases or pests, or an ability to thrive in saline soil or drought conditions
  • 45. Induced mutation – a short course for high Induced mutation – a short course for high level management level management Radiation (mutagenic treatment) Mo Mo (’000) M11 M (’000) (10,000-’ 00,000) M2 mutation (after mutagenic treatment) (segregating population) AA Aa AA Aa aa bb bb 1 (self-fertilization) bb :2 bb :1 bb CC CC CC CC CC mutant
  • 46. - New variety - Prebreeding sd mutant Mutagenic M4 treatment M0 M1 M2 M3 Mutated generations
  • 47. Chimerism of M1 plants Parent cultivar Mutagenic treatment seeds Radiation (multicellular embryo meristem, leaf etc.) Mo Chemical mutagenesis Insertional mutagenesis (embryo) M2 seeds M1 (meiosis) (embryo) (M1 plant, chimera) Segregating M2 population (Selection on single plant basis) M3
  • 48. Handling of mutants Segregating M2 population Segregating M3 M3 - Homozygosity test of population putative mutants selected in M2 (Selection of mutants among lines derived from individual M2 plants) M4 - Homozygosity test of selected M4 - Homozygosity test of selected mutants, preliminary evaluation, mutants, preliminary evaluation, seed multiplication seed multiplication Selection M5 - Mn Cross-breeding Multilocation trials Cross-breeding Direct release
  • 49. Modern Plant Breeding • Modern crop varieties contribute ~40% to the yield increase during last half century • Plant breeders make use of genetic variability for developing new varieties • Generating genetic variability: (1) exists in (agro-)biodiversity (e.g. preserved landraces, related wild species) (2) induced using nuclear techniques (3) transferred among different species by transgenics
  • 50. Plant Breeding Methods Modern plant breeding, based on the means of generating genetic variability, is classified into: Cross breeding: the key component is “cross” [between commercial varieties and/or landraces] and “selection”; the end products are recombinants of existing alleles. The potential is mostly explored by prospection (spontaneous mutations). Mutation Breeding: Generating new gene alleles not existing in the germplasm; or improving a few key traits in a otherwise excellent variety (induced mutations). No GMO, no intellectual property (IP) issues. Transgenic breeding: Adding foreign genes into a commercial variety. GMO, IP issues (monopoly of new varieties)
  • 51. Mutation Assisted Breeding Strategies elite mutant + agronomic value elite + resistance + agronomic value pre-breeding mutant - resistance +/- agronomic value + resistance agronomic value: •yield (agro)biodiversity •quality - agronomic value •adaptability + resistance •a.o.
  • 52. Phenotype gap –combining mutagenesis and genomics Phenotype gap –combining mutagenesis and genomics To obtain the full range of phenotypes we need to increase To obtain the full range of phenotypes we need to increase both the breadth and depth of the mutant resources both the breadth and depth of the mutant resources breadth Mining Mining Tool: new loci new induced alleles in mutations Mutation known Approach: grid loci mutational analysis depth Deletion lines
  • 53. Gene Finding & Function Analysis Strategies Gain of function high-throughput - Resistance molecular screening + Resistance HAPPY-mapping DNA-chips TILLING Loss of function SAGE DArT ... - Resistance + Resistance
  • 54. Crop improvement by mutation techniques No mutation Mutant cultivars Negative mutation - Higher yielding - Disease resistant - Environmental stress tolerant - Climate resilient - Well adapted - Better nutrition/quality
  • 55. Pathway reconstruction Gene network interactions Output Z Output ? ?≡Z ?≠Ζ Mutation Positive interaction Preserved interaction Negative interaction Not preserved interaction Reversed sign of interaction New interaction modified from Ralph J. Greenspan (2001)
  • 56. Mutagenesis meets Genomics Pathway reconstruction Reference, tester Mutant modified from
  • 57. Mutant Varieties 2012: 3218 officially released mutant varieties worldwide from 214 different plant species More than 80% mutant varieties have been developed by using nuclear techniques
  • 58. Selection of Herbicide Tolerant Mutants Field and screenhouse set-up of herbicide Mutants and WT at one week after herbicide spraying: WT are placed in both ends of seed box for screening the replicated set-up and for M2 and M3 set-up, additional line of WT was placed in the middle. •53 mutant lines of NSIC Rc156 and NSIC Rc144 with a total of 339 individual plants survived and were seed increased. •For mass screening of NSIC Rc218 SR mutant lines, 43 M3 and 108 M2 plants were selected.
  • 59. Selection of Tungro Resistant Mutants Pictures above show tungro reactions of a) ARC-resistant check b) TN1- susceptible check ; c) NSIC Rc218 –WT; d)NSIC Rc218-M2; e) NSIC Rc144-WT and NSIC Rc144-3-16-3. From above right, control checks reaction against tungro virus and from below left transplanted R and I plants for seed increase.
  • 60. Selection of Bacterial Blight Resistant Mutants Inoculation of plants at 35 DAT using clip method IR24: S check IRBB21: R check Mutant entry :MR 24 plants from an original mutant line exhibited resistant reaction (<10cm lesion length). The susceptible check (IR24) exhibited an average lesion length of 28.2cm while the wild type wild type (NSIC Rc144) has 23.5cm lesion length
  • 62. Response of popular varieties to drought stress PSB PSB Rc14 PSB Rc82 PSB Rc82 Rc14 PSB Rc18 PSB NSIC NSIC Rc18 Rc146 Rc146
  • 63. BREEDING FOR ULTRA-EARLY MATURING RICE VARIETIES Varieties NSIC Rc134 and PSB Rc10 with ion beam treatments, 40 and 250 Gy, have been evaluated in the field. Generally the mutants were phenotypically better than the parent varieties in terms of reactions to BLB. Early maturity with slow senescence rate was observed in the 250 Gy treatment
  • 64. Y DAM DO (orig) - clustered Y DAM DO (orig) SCRL-2008DS-269 SCRL-2008DS-266 SCRL-2008DS-271 (b) SCRL-2008DS-271 - clustered SCRL-2008DS-277 - heavy Y DAM DO SCRL- SCRL-2008DS- SCRL- SCRL-2008DS- (a) SCRL-2008DS-263 - light (c) (ORIG) 2008DS-269 266 2008DS-271 271 SCDL: Variations in panicle (a), grain size and shape (b), and kernel quality of lines from YDAMDO variations in panicle (a), grain size & shape (b), and variations in grain size &shape, and absence of awn kernel quality ofJepun observed among the lines from Nerica 2
  • 65. Mutant varieties / lines developed Rice • PSB Rc78 (Pampanga): derived from Sigadis Milagrosa , gamma Co 60 source at 25 kR, an aromatic irrigated lowland variety • NSIC Rc130 (Tubigan 3) – anther culture-derived, very early maturing irrigated lowland variety • Anther-culture derived varieties for saline areas NSIC Rc186 (Salinas 3) NSIC Rc188 (Salinas 4) NSIC 2011 Rc290 Salinas 6 NSIC 2011 Rc292 Salinas 7 NSIC 2011 Rc294 Salinas 8
  • 66. Production of Mutant Populations and Selection of Mutant Lines with Improved Traits Four mutant lines derived from NSIC Rc144 and NSIC Rc156 gave a yield range of 9.1-13.52 tons/ha with yield advantage of 131.72-195.35 % over yield checks (PSB Rc82 & NSIC Rc222) and their respective wild types.
  • 67. DEVELOPMENT OF LOW PHYTIC ACID (LPA) RICE: PROGRESS AND PROSPECT Two lpa mutants (Os-lpa-MH86 and Os-lpa-XQZ), wild types, and associated molecular markers for lpa, were obtained from Zhejiang University, China. Initial morpho-agronomic traits evaluated at PhilRice Nueva Ecija revealed that Os-lpa-MH86 has good tillering ability, plant height and dense spikelets compared to Os-lpa-XQZ. Hybridization was conducted using these mutants with NSIC Rc160 to develop segregating populations for genetic and molecular marker analysis. Phytic acid (myo-inositol-1,2,3,4,5,6-Hexakisphosphate) is the seed phosphorus storage compound needed for the germination of legumes and grains including rice. It is known for its anti-cancer and antioxidant properties and is located in globoids in the rice bran and germ. However, it also binds minerals and significantly lower iron absorption when one consumes rice as “brown rice.”
  • 68. Holistic Food Safety Systems “farm to fork”
  • 69. NOTABLE AND SUSTAINABLE IMPACTS Research for development activities have delivered continuous results that have improved livelihoods and food security while helping to protect the environment Improved agricultural productivity Higher incomes More sustainable use of natural resources Facilitated growth in agricultural trade Promoted applications of nuclear technology
  • 70. Success Stories of Nuclear Research In Different Parts of World Improved crop varieties: High yielding, disease and insect resistant leading to higher economic returns Combating water scarcity and soil salinization through managing and conserving irrigation waterapplication of integrated salinity management practices Diagnostic capacity building for animal diseases Fruit fly control: Implementation of area-wide fruit fly management programmes, which include an SIT component Upgrading Food Analysis Laboratories
  • 71. Scenario of various stresses in Bangladesh Salinity: In Bangladesh, there are 1.02 million hectares of cultivable land affected by soil salinity ranging 2.0 to > 16.0 dS/m The coastal areas of Bangladesh cover more than 30% of the cultivable lands of the country About 53% of the coastal areas are affected by salinity Agricultural land use in these areas is very poor, which is much lower than country’s average cropping intensity Salinity causes unfavorable environment and hydrological situation that restrict the normal crop production throughout the year
  • 72. Salinity Problem World wide, salt affected areas = 400 – 950 m. ha (Lin et al., 1998). 170 x 106 ha Russia 8.5 x 106 ha In Asia, only rice lands = 37 China USA 54 m.ha 11 13 x 106ha Pakist Indonesia Bangladesh: 2.8 m.ha an 24 21 x 106 ha Another 9.5 m. ha of Paraguay 86 x 10 ha 6 11 India x 106 ha x 357 saline soil => managed by 9 x 106 Argentina 10 ha Australia 6 ha Ethio irrigation drainage and by Chile pia chemical treatment….i.e., too costly. Need salt tolerance varieties.
  • 73. Challenges in coastal saline areas
  • 74. • Saline area in 1973 =0.833 mha • Saline area in 2000 = 1.02 mha • Saline area in 2012 = 2.80 mha
  • 75. Soil Salinity Map 2009 Legend 2009 2000 1973
  • 76. Coastal zone • About 2 M ha for rice • 25-60 cm H 2 O stagnation • EC 6-12 dS/m (soil and water) • Improving the productivity
  • 77. Submergence: Submergence areas cover about 15% of total cultivable land which are tidal flood, flash flood and flood Flash floods accounts for More than 2.0 mha areas of Bangladesh by Flood: Mymensingh District, 2011 different grades
  • 78. Flash floods regularly affect rainfed lowland rice (RLR) ecosystems where flood water remains for around three weeks in many parts of the country Up to 100% yield losses may occur due to Flash floods depending upon different factors of submergence prone ecosystem
  • 79.
  • 80. >2.0 million hectare rice areas are affected by flash flood during T. Aman season T. Aman rice often gets submerged during vegetative stages for around 2 weeks incurring yield loss Submergence tolerant high yielding rice varieties along with production packages are required for this unfavorable ecosystem
  • 81. Drought: More than 2.0 million hectares of cropped land are affected by drought during both dry (upland) and wet (T. Aman) seasons. Drought resistance in rice is a complex trait controlled by different root and shoot characters and physico- chemical activities at different stages of growth
  • 82. Drought •It is very difficult to screen rice variety for complete drought resistance • Varieties with moderate resistance under moderately rainfall areas are emphasized
  • 83.
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  • 85. • Around 2.0 mha rice area are affected by drought in RLR and upland ecosystem • Early drought in T. Aman hampers crop establishment, delays transplanting, reduces yield. • Terminal drought in T. Aman season affect the reproductive phase, causes sterility, partial grain filling and reduced yield. • Early rice varieties escape drought. • BINA needs genetically drought resistant varieties
  • 86. Sl. Stress Area Varieties No (Mha) 1 Salinity 2.0 BR23, BRRI dhan40, BRRI dhan41, BRRI dhan47, BRRI dhan53, BRRI dhan54, BINA dhan8 and BINA dhan10 2 Submergence >2.0 BRRI dhan51, BRRI dhan52, Ciherang-sub1 (proposed BINA dhan11) and Samba Mahsuri-sub1 (proposed BINA dhan12) 3 Drought 2.0 BR24, BRRI dhan42, BRRI dhan43 (upland ecosystem), BRRI dhan56, BRRI dhan57, NERICA mutants
  • 87. Variety released By the peaceful use of Nuclear energy Crop Number Rice 10 Jute 2 Oilseed 16 Pulse 22 Vegetables 9 Total 59
  • 88. BINASARISHA-4 Released in 1997 High yielding Duration : 80 Average yield: 1.9 t/ha
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  • 97. Short duration variety BINADHAN-7 • Developed by irradiating seeds of Tai Nguyen (a Vietnamese variety) with 250 Gy dose of BINADHAN-7 gamma-rays • Released in 2007 for transplant aman season • Most popular early maturing Transplant aman variety • High yielding (Average 5.5-6.5 t/ha maximum 7.6 t/ha ) • Semi dwarf • Erect and short culm • Long slender bright grains
  • 98.
  • 99.
  • 100.
  • 101. Salt Tolerant Rice Variety BINADHAN-8 Salt cultivation field Binadhan-8 Released in 2010 Crop duration 130-135 days Salinity tolerance : Seedling stage: 12-14 dS/m Mature stage: 8-10 dS/m Suitable for cultivation in Boro, Aus and Aman season Yield: Boro: 4.5-5.5 t/ha in saline condition 8.0 t/ha in non-saline field Aman: 4.0 t/ha in saline Field demonstration of Binadhan- condition 5 t/ha in normal 8 in Bashkhali, Chittagong, Boro- condition 2010
  • 102.
  • 103. Salt Tolerant Rice Variety Binadhan-10 Released in 2012 Crop duration 125-130 days Salinity tolerance : Seedling stage: 12-14 dS/m Mature stage: 10-12 dS/m Suitable for cultivation in Boro, Aus and Aman season Yield: Boro: 5.0-5.5 t/ha in saline condition 8.5 t/ha in non-saline field Aman: 4.5 t/ha in saline condition 5.5 t/ha in normal condition
  • 104. Salt Tolerant Rice Variety Field evaluation of Binadhan-10, Dumuria, Khulna Boro, 2012
  • 105. Tikabunia, Dumuria, Khulna, boro, 2012 Binadhan-10 Experimental field Salt affected field Shrimp cultivation
  • 106. Tikabunia, Dumuria, Khulna, boro, 2012 Experimental field Binadhan-10 Salt affected field
  • 107. Tikabunia, Dumuria, Khulna, boro, 2012 Expt. field Binadhan-10 Salt affected field
  • 108. Shyamnagar, Satkhira Fallow land Shrimp Gher
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  • 111. Binadhan-7 Potato (Diamont) BINADHAN-7 (Aman) Monga mitigation Model for northern Bangladesh BINA dhan7-Potato- Maize Maize
  • 112. Irrigated Rice: Major yield loss factors HOW DOES CLIMATE CHANGE THE EFFECT OF THESE FACTORS ON CROP YIELD AND LOSS? Subtropics Cold Drought Humid Tropics K deficiency Stemborer P deficiency Drought Sub-humid tropics N deficiency Submergence Weeds Organic matter Rice bugs Stemborer deficiency BLB Bacterial leaf blight Submergence BPH Drought Lodging Bacterial blight Blast Sheath blight Lodging Gall midge Blast Sulfur deficiency Army worm Zinc deficiency Rodents Zinc deficiency Leaffolder
  • 113. Yield losses in rice cultivation •Stresses Yield loss (as % of production) ________________________________ •Pest infestation 6.8 •Problem soils 6.4 •Water stresses 9.9 •Average loss 23.1 ________________________________
  • 114. Salinity screening at seedling stage THDB Pokkali NON-SALINIZED SETUP SALINIZED SETUP 12 dS/m
  • 115. Salinized (EC 6dS/m) Non-salinized Salinity screening of genotypes for salt tolerance at the reproductive stage
  • 116. Fakirhat, Bagherhat, Boro, 2009-10 Binadhan-8 EC: 8 dS/m
  • 117. Mongla, Bagherhat, Boro, 2009 Binadhan-8 EC: 9 dS/m
  • 118. Shyamnagar, Satkhira, boro season, 03-11-2011 BRRI dhan28 (EC:7.5 dS/m) Binadhan-8 (EC:7.5 dS/m)
  • 119. Bashkhali, Chittagong, Boro 2010-2011, DAE (EC 10 dS/m)
  • 120. New Salt Tolerant Rice Variety: Hope for the Coastal Farmers Binadhan-8 BRRI dhan28 (EC:8.0 dS/m) (EC:8.0 dS/m) Demonstration of Binadhan-8, Munshiganj (near Sundarban, Shyamnagar, Satkhira, 03-11-2011
  • 121. Salt cultivation field Demonstration of Binadhan-8 at Bashkhali, Chittagong, 2011-12 by DAE
  • 122. Bashkhali, Chittagong, Boro 2010-2011, DAE (EC 10 dS/m)
  • 123.
  • 124. Demonstration plot Shrimp culture
  • 125. Shyamnagar, Satkhira Fallow land Shrimp Culture
  • 126. Impact of salt tolerant rice varieties • BINAdhan-8 is being recognized as Mega Variety (released in 2010) • Suitable for Aus, Aman and Boro season • BINAdhan-8 and 10 are being cultivated in the salt affected areas (13 coastal districts) • 40-50% fallow land of coastal saline area will be covered with these salt tolerant varieties and additional 4-5 million tones of rice could be produced
  • 127. Submergence activities: We have some recent success in submergence research as we have two very promising lines-  Ciherang-Sub1 (proposed Binadhan-11) and  Samba Mahsuri-Sub1 (proposed Binadhan-12)  Can survive under submerged condition, 25 days  Growth duration (Normal condition: 125-130 days and Submerged: 150-155 days) of Ciherang-Sub1 is comparatively lower than Samba Mahsuri-Sub1 (Normal condition: 135-140 days and Submerged: 160- 165 days)  Yield (4.0-4.5 t/ha)  The field evaluation of two lines has already been done in boro (dry) season 2011
  • 128.
  • 129.
  • 130.
  • 131. Ciherang-sub1 (Proposed Binadhan-11) SCA Evaluation Team
  • 133.
  • 134. Drought activities:  In 2010, we collected three rice varieties New Rice for Africa “NERICA” (NERICA-1, NERICA-4 and NERICA-10) seed from BADC  Irradiated them in different doses of Gamma radiation (250 Gy, 300 Gy and 350 Gy) to create variability. These are now in M4 generation and are being evaluation at BINA HQ farm.
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  • 140.
  • 141.
  • 142.
  • 143. Nano biotechnology Nano-Technology is one of the emerging interdisciplinary fields which is about to bring a technological revolution. It is a engineering at the atomic or molecular scale, deals with devices typically less than 100 nanometers in size, or size one billionth of a meter, or one ten-thousandth the width of a human hair Nanotechnology provides a new basis for innovation in the life sciences, revolutionary biotechnology processes, the synthesis of new drugs and their targeted delivery, regenerative medicine, neuromorphic engineering stem cell research, genomics, proteomics as well as the well- established fields of agriculture, environmental management, medical device manufacturing
  • 144. “Food security exists when all people, at all times, have physical and economic access to sufficient, safe and nutritious food to meet their dietary needs and food preferences for an active and healthy life” - World Food Summit, 1996 Food security is given the topmost priority in Bangladesh. Side by side with domestic food production, greater importance is given to ensure access to adequate and safe food by all people at all times for maintaining an active and healthy life. Unlocking the Potential: - National Strategy for Accelerated Poverty Reduction (PRSP)