Fabio Cunial

maximal repeat suffix tree cdawg burrows-wheeler transform maximal repeats repetitive strings bwt matching statistics bidirectional index bwt runs suffix-link tree transposons local alignments clustering repeats de novo genome assembly run-length encoded bwt right-maximal matching statistics alignment-free protein classification ppm escape probability variable-order markov model infinite-order de bruijn graph variable-order de bruijn graph repetitive string parent operation weiner link long reads pacbio reads rlbwt lz77 markov correction minimal absent word k-mer string kernel probabilistic suffix trie suffix tree topology wavelet tree minimal absent words locate query count query straight-line program contraction string depth context-free grammar heavy path decomposition