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Associate Professor, Associate Director
Susanna-Assunta Sansone, PhD
Open Data Hong Kong & Knowledge Dialogues event on FAIR data, HK, 20 Nov, 2017
@SusannaASansone
Open data is a mean to do better science
more efficiently
https://dx.doi.org/10.17605/OSF.IO/3EGZH
Open science
• Achieving research data transparency
- incentivize the shared management of data, documentation and
discoverability, as well as standards for interoperability and curation
– in partnership with universities and others across the innovation
ecosystem (business, government etc.)
Open science
• Achieving research data transparency
- incentivize the shared management of data, documentation and
discoverability, as well as standards for interoperability and curation
– in partnership with universities and others across the innovation
ecosystem (business, government etc.)
• Maximising the use of e-infrastructure
- develop simplified and secure access models and innovative ways
of utilising technical developments, in a distributed and scalable
manner
Open science
• Achieving research data transparency
- incentivize the shared management of data, documentation and
discoverability, as well as standards for interoperability and curation
– in partnership with universities and others across the innovation
ecosystem (business, government etc.)
• Maximising the use of e-infrastructure
- develop simplified and secure access models and innovative ways
of utilising technical developments, in a distributed and scalable
manner
• Connecting existing silo-ed disciplines
- build new capabilities, for example in data analytics, modelling,
algorithms, visualisation and software
- maximise investment in people, skills, methods
Engineering the Imagination: Disability, Prostheses and the Body
Engineering and cultural studies
Exploring Water Re-use - the nexus of politics, technology and economics
Before and After Halley: Medieval Visions of Modern Science
Astrophysics and medieval studies
The ontogeny of bone microstructure as a model of programmed transformation in 4D materials
Archaeology, anthropology and mechanical engineering
How can we improve Healthcare IT when most people are blind to its poor engineering?
ICT, medicine and engineering
People, Pollinators & Pesticides in Peri-Urban Farming
Biology, zoology, law & policy
Systemic Risk: Mathematical Modelling and Interdisciplinary Approaches
Mathematics and economics
Working across boundaries of discipline,
geography and time
Open science
• Achieving research data transparency
- incentivize the shared management of data, documentation and
discoverability, as well as standards for interoperability and curation
– in partnership with universities and others across the innovation
ecosystem (business, government etc.)
• Maximising the use of e-infrastructure
- develop simplified and secure access models and innovative ways
of utilising technical developments, in a distributed and scalable
manner
• Connecting existing silo-ed disciplines
- build new capabilities, for example in data analytics, modelling,
algorithms, visualisation and software
- maximise investment in people, skills, methods
• Meting ethics and public expectations, around safe usage
of data
Open science
• Achieving research data transparency
- incentivize the shared management of data, documentation and
discoverability, as well as standards for interoperability and curation
– in partnership with universities and others across the innovation
ecosystem (business, government etc.)
• Maximising the use of e-infrastructure
- develop simplified and secure access models and innovative ways
of utilising technical developments, in a distributed and scalable
manner
• Connecting existing silo-ed disciplines
- build new capabilities, for example in data analytics, modelling,
algorithms, visualisation and software
- maximise investment in people, skills, methods
• Meting ethics and public expectations, around safe usage
of data
A set of principles, for those
wishing to enhance
the value of their
data holdings
Designed and endorsed by a diverse
set of stakeholders - representing
academia, industry, funding agencies,
and scholarly publishers.
https://www.force11.org/group/fairgroup/fairprinciples
These put emphasis on enhancing the
ability of machines to automatically
find and use the data, in addition to
supporting its reuse by individual
“….We support effort to promote voluntary knowledge diffusion and technology transfer on mutually
agreed terms and conditions. Consistent with this approach, we support appropriate efforts to promote
open science and facilitate appropriate access to publicly funded research results on findable, accessible,
interoperable and reusable (FAIR) principles….” http://europa.eu/rapid/press-release_STATEMENT-16-2967_en.htm
G20 Leaders’ Communique Hangzhou Summit
Wider adoption by policies in UK and EU, e.g.
European Open Science Cloud (EOSC) Pilot
Consortium of 33 pan-European organisations & 15 third parties covering a
range of disciplines and organisations working together to develop a
European-wide governance framework for a pan-European “trusted virtual
environment with free, open and seamless services for data storage,
management, analysis, sharing and re-use, across disciplines”
Wider adoption by many biomedical research
infrastructure programmes in EU and USA, e.g.
Building a pan-European infrastructure for biological information
Categorized by European Council
as one of Europe’s three priority
new Research Infrastructures
€19 million
2015 - 2019
Wider adoption by pharmas, e.g.
The world's biggest public-private partnership
in the life sciences, a partnership between the European Commission and the
European pharmaceutical industry.
Funds research and infrastructure projects to improve health
by speeding up the development of, and patient access to, innovative medicines.
IMI phase 2 programme (2014-2020) has a 3.3 billion EURO budget
Big
Life
Science
Company
Yesterday Today Tomorrow
Yesterday Today Tomorrow
Innovation Model Innovation inside Searching for Innovation Heterogeneity of collaborations;
part of the wider ecosystem
IT Internal apps & data Struggling with change
security and trust
Cloud, services
Data Mostly inside In and out Distributed
Portfolio Internally driven and owned Partially shared Shared portfolio
Credit to:
Big
Life
Science
Company
Proprietary
content
provider
Public
content
provider
Academic
group
Software vendor
CRO
Service provider
Regulatory
authorities
The rise of public-private-partnerships
An IMI project advancing the FAIR concept
A recently closed call for proposals on FAIRification
Aim of the winning consortium is to FAIRify the output of
20 IMI-funded research projects,
leveraging on the work by eTRIKS and ELIXIR
A trans-NIH funding initiative established
in 2014 to enable biomedical research as
a digital research enterprise
• Facilitate broad use of biomedical digital assets by making them discoverable,
accessible, and citable
• Conduct research and develop the methods, software, and tools needed to
analyze biomedical Big Data
• Enhance training in the development and use of methods and tools necessary for
biomedical Big Data science
• Support a data ecosystem that accelerates discovery as part of a digital enterprise
New FAIR Data Commons Pilot phase
start started (2017-2020, $95.5 Million)
• Focus 9 areas:
1. FAIR Guidelines and Metrics
2. Global Unique Identifiers for FAIR Biomedical Digital Objects
3. Open Standard APIs
4. Cloud Agnostic Architecture and Frameworks
5. Workspaces for Computation
6. Research Ethics, Privacy, and Security
7. Indexing and Search
8. Scientific Use cases
9. Training, Outreach, Coordination
• Available in a public repository
• Findable through some sort of search facility
• Retrievable in a standard format
• Self-described so that third parties can make sense of it
• Intended to outlive the experiment for which they were collected
To do better science, more efficiently
we need data that are…
Metadata for data discovery
Databases/data
repositories
Metadata standards
Formats Terminologies Guidelines
Interlink standards among themselves and with repositories
Data policies by
funders, journals and
other organizations
Standard developing groups, incl:Journal, publishers, incl:
Cross-links, data exchange, incl:
Societies and organisations, incl: Institutional RDM services, incl:
Projects, programmes:
Working with and for producers and consumers, e.g.:
• Data has to become an integral part
of the scholarly communications
• Responsibilities lie across several
stakeholder groups: researchers,
data centers, librarians, funding
agencies and publishers
• But publishers occupy a “leverage
point” in this process
FAIR data - roles and responsibilities
• Incentive, credit for sharing
- Big and small data
- Unpublished data
- Long tail of data
- Curated aggregation
• Peer review of data
• Value of data vs. analysis
• Discoverability and reusability
- Complementing community
databases
FAIR data – the value of data articles/journals
Technology
Social engineering
Let’s work
together to foster a culture
in which FAIR science is the norm

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Open Science Event Discusses FAIR Data Principles

  • 1. Associate Professor, Associate Director Susanna-Assunta Sansone, PhD Open Data Hong Kong & Knowledge Dialogues event on FAIR data, HK, 20 Nov, 2017 @SusannaASansone
  • 2. Open data is a mean to do better science more efficiently https://dx.doi.org/10.17605/OSF.IO/3EGZH
  • 3. Open science • Achieving research data transparency - incentivize the shared management of data, documentation and discoverability, as well as standards for interoperability and curation – in partnership with universities and others across the innovation ecosystem (business, government etc.)
  • 4. Open science • Achieving research data transparency - incentivize the shared management of data, documentation and discoverability, as well as standards for interoperability and curation – in partnership with universities and others across the innovation ecosystem (business, government etc.) • Maximising the use of e-infrastructure - develop simplified and secure access models and innovative ways of utilising technical developments, in a distributed and scalable manner
  • 5. Open science • Achieving research data transparency - incentivize the shared management of data, documentation and discoverability, as well as standards for interoperability and curation – in partnership with universities and others across the innovation ecosystem (business, government etc.) • Maximising the use of e-infrastructure - develop simplified and secure access models and innovative ways of utilising technical developments, in a distributed and scalable manner • Connecting existing silo-ed disciplines - build new capabilities, for example in data analytics, modelling, algorithms, visualisation and software - maximise investment in people, skills, methods
  • 6. Engineering the Imagination: Disability, Prostheses and the Body Engineering and cultural studies Exploring Water Re-use - the nexus of politics, technology and economics Before and After Halley: Medieval Visions of Modern Science Astrophysics and medieval studies The ontogeny of bone microstructure as a model of programmed transformation in 4D materials Archaeology, anthropology and mechanical engineering How can we improve Healthcare IT when most people are blind to its poor engineering? ICT, medicine and engineering People, Pollinators & Pesticides in Peri-Urban Farming Biology, zoology, law & policy Systemic Risk: Mathematical Modelling and Interdisciplinary Approaches Mathematics and economics Working across boundaries of discipline, geography and time
  • 7. Open science • Achieving research data transparency - incentivize the shared management of data, documentation and discoverability, as well as standards for interoperability and curation – in partnership with universities and others across the innovation ecosystem (business, government etc.) • Maximising the use of e-infrastructure - develop simplified and secure access models and innovative ways of utilising technical developments, in a distributed and scalable manner • Connecting existing silo-ed disciplines - build new capabilities, for example in data analytics, modelling, algorithms, visualisation and software - maximise investment in people, skills, methods • Meting ethics and public expectations, around safe usage of data
  • 8. Open science • Achieving research data transparency - incentivize the shared management of data, documentation and discoverability, as well as standards for interoperability and curation – in partnership with universities and others across the innovation ecosystem (business, government etc.) • Maximising the use of e-infrastructure - develop simplified and secure access models and innovative ways of utilising technical developments, in a distributed and scalable manner • Connecting existing silo-ed disciplines - build new capabilities, for example in data analytics, modelling, algorithms, visualisation and software - maximise investment in people, skills, methods • Meting ethics and public expectations, around safe usage of data
  • 9.
  • 10. A set of principles, for those wishing to enhance the value of their data holdings Designed and endorsed by a diverse set of stakeholders - representing academia, industry, funding agencies, and scholarly publishers. https://www.force11.org/group/fairgroup/fairprinciples
  • 11. These put emphasis on enhancing the ability of machines to automatically find and use the data, in addition to supporting its reuse by individual
  • 12. “….We support effort to promote voluntary knowledge diffusion and technology transfer on mutually agreed terms and conditions. Consistent with this approach, we support appropriate efforts to promote open science and facilitate appropriate access to publicly funded research results on findable, accessible, interoperable and reusable (FAIR) principles….” http://europa.eu/rapid/press-release_STATEMENT-16-2967_en.htm G20 Leaders’ Communique Hangzhou Summit
  • 13. Wider adoption by policies in UK and EU, e.g.
  • 14.
  • 15. European Open Science Cloud (EOSC) Pilot Consortium of 33 pan-European organisations & 15 third parties covering a range of disciplines and organisations working together to develop a European-wide governance framework for a pan-European “trusted virtual environment with free, open and seamless services for data storage, management, analysis, sharing and re-use, across disciplines”
  • 16. Wider adoption by many biomedical research infrastructure programmes in EU and USA, e.g.
  • 17. Building a pan-European infrastructure for biological information Categorized by European Council as one of Europe’s three priority new Research Infrastructures €19 million 2015 - 2019
  • 18. Wider adoption by pharmas, e.g. The world's biggest public-private partnership in the life sciences, a partnership between the European Commission and the European pharmaceutical industry. Funds research and infrastructure projects to improve health by speeding up the development of, and patient access to, innovative medicines. IMI phase 2 programme (2014-2020) has a 3.3 billion EURO budget
  • 19. Big Life Science Company Yesterday Today Tomorrow Yesterday Today Tomorrow Innovation Model Innovation inside Searching for Innovation Heterogeneity of collaborations; part of the wider ecosystem IT Internal apps & data Struggling with change security and trust Cloud, services Data Mostly inside In and out Distributed Portfolio Internally driven and owned Partially shared Shared portfolio Credit to: Big Life Science Company Proprietary content provider Public content provider Academic group Software vendor CRO Service provider Regulatory authorities The rise of public-private-partnerships
  • 20. An IMI project advancing the FAIR concept
  • 21. A recently closed call for proposals on FAIRification Aim of the winning consortium is to FAIRify the output of 20 IMI-funded research projects, leveraging on the work by eTRIKS and ELIXIR
  • 22. A trans-NIH funding initiative established in 2014 to enable biomedical research as a digital research enterprise • Facilitate broad use of biomedical digital assets by making them discoverable, accessible, and citable • Conduct research and develop the methods, software, and tools needed to analyze biomedical Big Data • Enhance training in the development and use of methods and tools necessary for biomedical Big Data science • Support a data ecosystem that accelerates discovery as part of a digital enterprise
  • 23. New FAIR Data Commons Pilot phase start started (2017-2020, $95.5 Million) • Focus 9 areas: 1. FAIR Guidelines and Metrics 2. Global Unique Identifiers for FAIR Biomedical Digital Objects 3. Open Standard APIs 4. Cloud Agnostic Architecture and Frameworks 5. Workspaces for Computation 6. Research Ethics, Privacy, and Security 7. Indexing and Search 8. Scientific Use cases 9. Training, Outreach, Coordination
  • 24.
  • 25. • Available in a public repository • Findable through some sort of search facility • Retrievable in a standard format • Self-described so that third parties can make sense of it • Intended to outlive the experiment for which they were collected To do better science, more efficiently we need data that are…
  • 26.
  • 27. Metadata for data discovery
  • 28.
  • 29.
  • 30. Databases/data repositories Metadata standards Formats Terminologies Guidelines Interlink standards among themselves and with repositories Data policies by funders, journals and other organizations
  • 31. Standard developing groups, incl:Journal, publishers, incl: Cross-links, data exchange, incl: Societies and organisations, incl: Institutional RDM services, incl: Projects, programmes: Working with and for producers and consumers, e.g.:
  • 32.
  • 33. • Data has to become an integral part of the scholarly communications • Responsibilities lie across several stakeholder groups: researchers, data centers, librarians, funding agencies and publishers • But publishers occupy a “leverage point” in this process FAIR data - roles and responsibilities
  • 34. • Incentive, credit for sharing - Big and small data - Unpublished data - Long tail of data - Curated aggregation • Peer review of data • Value of data vs. analysis • Discoverability and reusability - Complementing community databases FAIR data – the value of data articles/journals
  • 36. Let’s work together to foster a culture in which FAIR science is the norm