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Secondary metabolites of Fungi
Marlia Singgih Wibowo
Fungal secondary metabolites
• Secondary metabolites are compounds 
produced by an organism that are not 
required for primary metabolic processes. 
Fungi produce an enormous array of 
secondary metabolites, some of which are 
important in industry
• Many fungi express secondary metabolites 
that influence competitive outcomes.
• The compounds are expressed along with 
enzymes necessary for extracellular digestion.
• The precise function of many of these 
compounds in the natural environment, 
however, is unclear.
• Secondary metabolites are generally 
produced following active growth, and many 
have an unusual chemical structure. Some 
metabolites are found in a range of related 
fungi, while others are only found in one or a 
few species. The restricted distribution implies 
a lack of general function of secondary 
metabolites in fungi.
• six of the twenty most commonly prescribed 
medications are of fungal origin. These 
metabolites have been subjected to 
combinatorial chemistry following growth in 
selective media. 
• Some metabolites are toxic to humans and 
other animals. Yet others can modify the 
growth and metabolism of plants.
The pathway
• Interestingly, the most important secondary 
metabolites seem to be synthesised from one 
or a combination of three biosynthetic 
pathways: polyketides arising from Acetyl 
Coenzyme A, mevalonate pathway that also 
arises from Acetyl Coenzyme A, and from 
amino acids.
• genes for the synthesis of some important 
secondary metabolites are found clustered 
together, and expression of the cluster 
appears to be induced by one or a few global 
regulators. 
Polyketide Metabolites
• Polymerisation of acetate may result in the 
formation of a fatty acid or a polyketide. 
Polyketides result when a primer other than 
acetate is included, and processing during 
chain elongation results in the inclusion of 
various other compounds. The chain may be 
further processed by cyclisation, lactonisation, 
or formation of thioesters or amides. The 
result is a staggering number of possile
structures built from the simple primer units.
• Included among the polyketide secondary 
metabolites are orsellinic acid, 
tetrahydroxynaphthalene (precursor for 
melanin), sterigmatocyctin, aflatoxins, statins, 
and fumonisin.
Aflatoxin
• Aflatoxins are produced in members of the 
Aspergillus parasiticus group via the 
polyketide pathway. The pathway has around 
20 steps, and the end products include a 
diversity of related compounds 
(bisfuranocoumarins) that can be readily 
converted one to another.
• Aflatoxin B1 is one of the most toxic compounds 
known. The toxin is formed commonly in plant 
materials held at relatively high moisture and 
temperature for long periods (ie growth in 
tropics and sub‐tropics). Peanuts, corn and 
cotton are readily contaminated in the field. The 
Aspergillus parasiticus group of fungi are 
common in soil. The fungi can colonise roots and 
spread through the plant. When harvested, 
contaminated seed will become toxic if not dried 
immediately and held in a dry form.
Structure of Aflatoxin B1
• Aflatoxins are toxic and carcinogenic. 
• The LSD 50 for ducks is 0.33 mg/kg. At lower 
levels and following prolonged exposure, the 
toxins cause liver cancer in humans. 
• Aflatoxin B1 is converted to Aflatoxin M (in 
milk) on passage through cows. Though less 
toxic, it does illustrate the potential damage 
caused by consumption of contaminated 
product. 
Aromatic Compounds
• Cyclic compounds can be synthesised via the 
polyketide or shikimic acid pathways. 
Zearalenone is one interesting example from 
this group. The compound regulates 
perithecium formation in the fungus. It also 
has an oestrogenic effect in mammals.
Structure of Zearalenone
Amino Acid Pathway
• Penicillin and cephalosporin are β lactam
antibiotics.  β lactam antibiotics are produced 
by a few Ascomycota and several bacteria. 
• The precursors of these antibiotics are amino 
acids. Synthesis of active antibiotics is 
directed by the inclusion in the growth 
medium of different organic and fatty acids 
resulting in different side chains on the 
compound.
• A second group of antibiotics derived from the 
amino acid pathway are the defensins. 
Defensins are peptides that act against 
bacteria. They are found in animals where 
they function to protect organs such as the 
gingiva where bacterial densities are very 
high. The first defensin found in fungi has 
been called plectasin. The role of plectasin in 
its host Pseudoplectania nigrella is unknown. 
• Toxins derived from amino acid synthesis 
include psilocybin (Psilocybe) and Bufotenine
(Amanita). 
• These compounds act on nerve impulses, 
resulting in hallucinations. The result is 
thought to be due to the similarities between 
the compounds and serotonin
Combination of Pathways
• Ergot alkaloids are synthesised from several 
pathways. Trypotophan from the shikimic acid 
pathway is attached to an isoprenoid moiety 
from the mevalonate pathway, and several 
amino acids from primary metabolism are added 
depending on the final product. Ergot alkaloids 
are produced as a complex mixture of related 
compounds from a branched pathway.
• The activity of the alkaloids is as varied as the 
compounds. In essence, the compounds may 
function as vasodilators, hormone regulators, 
and feeding deterrents. They can be active in 
mammals and insects. 

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Secondary metabolites of fungi