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Estimating reef shark abundance using
video surveys and agent based modelling
in Ningaloo Marine Park
 Supervisor : Mathew Vanderklift.
Marine and atmospheric research, CSIRO, Perth,Western Australia.
1
 Traineeship : Helene Boulloche-Sabine.
Master’s degree “BEST” Biodiversity and tropical ecosystems, Reunion island.
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
1
What is the abundance of coral reef sharks
in the Ningaloo Marine Park ?
How to make accurate estimate of
an elusive species ?
What are the key parameters to
establish a proxy of sharks’
abundance and how to obtain
information about these key
parameters ?
2
 Knowing the abundance = key requirement !
Using a direct or indirect estimator :
 Each method has its own set of biaises.
Examples :
 Capture, mark, recapture
 Tagging, tracking
 Aerial detection, photographic traps
 Belt transects, stationary point counts
 Underwater video, baited or not.
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
3
Underwater unbaited video
Sharks : elusive species
 Estimating the abundance of sparsely distributed, rare and
elusive species is challenging
 Especially where direct observations are difficult
 Minimize the biases on the ecosystem and on animals’
behaviour
 Generate estimates of the density of sharks using
modelling
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
4
Agent based model
 The model attempts to simulate the foraging behaviour of
blacktip reefshark
 It requires 3 main components :
3) A way to determine when each modelled individual can be
‘detected’ by the cameras in the model.
1) Statistical distributions describing the lengths of straight-line
movements and the turning angles
2) An algorithm controlling the way each individual interacts
with habitats and with obstacles to movement
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
5
Agent based model

Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
6
 Distribution of the turning angles constitute a key parameter in
the agent based model.
The influence of the scale is very strong
Turning Angles
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
7
Sony DCR-HC15E
New campaign will begin in
March 2015 in Mandu.
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
8
Raspberry Pi
10 Raspberry Pi cameras are added to the new campaign
Able to record for a very long time : 20 hours
 Can provide information about difference in swimming
behaviour between Dawn, Noon and Dusk.
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
 Expectations of the Ningaloo project :
1) Obtain additional data for Fobs
3) Get information about foraging behaviour of coral reef shark :
 acoustic data and drones.
2) Sharpen the agent based model
9
Problematics
Estimate
abundance
Modelling
& Video
Turning
angles
M&M Conclusion
1
THANK YOU FOR YOUR ATTENTION
White tip reef shark, Mandu, March 2014.

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Presentation2

  • 1. Estimating reef shark abundance using video surveys and agent based modelling in Ningaloo Marine Park  Supervisor : Mathew Vanderklift. Marine and atmospheric research, CSIRO, Perth,Western Australia. 1  Traineeship : Helene Boulloche-Sabine. Master’s degree “BEST” Biodiversity and tropical ecosystems, Reunion island.
  • 2. Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion 1 What is the abundance of coral reef sharks in the Ningaloo Marine Park ? How to make accurate estimate of an elusive species ? What are the key parameters to establish a proxy of sharks’ abundance and how to obtain information about these key parameters ?
  • 3. 2  Knowing the abundance = key requirement ! Using a direct or indirect estimator :  Each method has its own set of biaises. Examples :  Capture, mark, recapture  Tagging, tracking  Aerial detection, photographic traps  Belt transects, stationary point counts  Underwater video, baited or not. Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 4. 3 Underwater unbaited video Sharks : elusive species  Estimating the abundance of sparsely distributed, rare and elusive species is challenging  Especially where direct observations are difficult  Minimize the biases on the ecosystem and on animals’ behaviour  Generate estimates of the density of sharks using modelling Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 5. 4 Agent based model  The model attempts to simulate the foraging behaviour of blacktip reefshark  It requires 3 main components : 3) A way to determine when each modelled individual can be ‘detected’ by the cameras in the model. 1) Statistical distributions describing the lengths of straight-line movements and the turning angles 2) An algorithm controlling the way each individual interacts with habitats and with obstacles to movement Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 7. 6  Distribution of the turning angles constitute a key parameter in the agent based model. The influence of the scale is very strong Turning Angles Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 8. 7 Sony DCR-HC15E New campaign will begin in March 2015 in Mandu. Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 9. 8 Raspberry Pi 10 Raspberry Pi cameras are added to the new campaign Able to record for a very long time : 20 hours  Can provide information about difference in swimming behaviour between Dawn, Noon and Dusk. Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 10.  Expectations of the Ningaloo project : 1) Obtain additional data for Fobs 3) Get information about foraging behaviour of coral reef shark :  acoustic data and drones. 2) Sharpen the agent based model 9 Problematics Estimate abundance Modelling & Video Turning angles M&M Conclusion
  • 11. 1 THANK YOU FOR YOUR ATTENTION White tip reef shark, Mandu, March 2014.