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IBM Systems and Technology Group                                                                                             Education
Deep Computing




                                                            Durham University gains
                                                            new insight into the
                                                            evolution of the universe
                                                            Building an eco-friendly high-performance computing
                                                            cluster for cosmology research with IBM System x
                                                            iDataPlex


                                                            Durham University is the third oldest university in England after
             Overview                                       Oxford and Cambridge, and has been a leading European centre of
                                                            learning for over 1,000 years. With more than 14,000 students and
             Business challenge                             3,800 staff, the University’s 16 colleges provide degree courses in a wide
             To maintain its position at the forefront
             of international research, the Institute for
                                                            range of subjects across three faculties: Arts and Humanities, Social
             Computational Cosmology at Durham              Science and Health, and Science.
             University wanted to develop a new
             high-performance computing cluster that        Established in 2002, the University’s Institute for Computational
             would enable even more sophisticated
             simulations of the universe. With              Cosmology has become a leading international centre for research
             constraints on data centre space, power        into the origin and evolution of the universe, using high-performance
             and cooling, the Institute looked to base      computing (HPC) clusters to simulate cosmological events and answer
             the new cluster on compact, energy-
             efficient technologies.
                                                            some of the most fundamental questions in science: What were the first
                                                            objects in the Universe? How do galaxies form? What is the nature of
             Solution                                       dark matter and dark energy? Where does the large-scale structure of
             Working with OCF and IBM, the Institute
             designed and deployed COSMA4, a 25
                                                            the universe come from? What is the fate of the Universe?
             teraflop cluster based on water-cooled
             IBM® System x® iDataPlex® servers with         “Along with engaging the general public and helping people to
             2,640 Intel Xeon cores. IBM System             understand their place in the cosmos, our research helps raise the
             Storage® DS3500 hardware provides 610
             TB of storage capacity, which is managed       profile of science in general,” says Professor Carlos Frenk, Director of
             by the IBM General Parallel File System™       the Institute for Computational Cosmology. “It serves as an important
             and IBM Tivoli® Storage Manager.               factor in motivating young people to become scientists. There are also
                                                            technological spin-offs of our work, in the form of better numerical
                                                            algorithms and novel solutions to problems which have applications in
                                                            many areas other than cosmology.”

                                                            Computational cosmology
                                                            Since its foundation, the Institute has run its simulations on a series of
                                                            HPC clusters known as COSMA. COSMA2 and COSMA3 were both
                                                            based on Sun servers and storage and the Solaris operating system,
                                                            but as the field of computational cosmology developed, the need for a
                                                            larger-scale solution became evident.

                                                            “The level of detail in the models we use is continually increasing, so
                                                            there’s a perpetual need for more processor power and data storage,”
                                                            says Dr Lydia Heck, Senior Computer Manager. “In addition to
                                                            running our own projects, we are also part of an international
IBM Systems and Technology Group                                                                                               Education
Deep Computing




                                                                cosmology consortium called Virgo, which unites HPC resources from
                Business Benefits                               around the world to run simulations based on hundreds of terabytes
                                                                of data. To meet these needs, we decided to build COSMA4 – a new
           •	   Enables simulations of universe models          cluster that would provide at least 500 TB of storage and 25 teraflops of
                that provide unprecedented levels of
                detail – down to the level of galaxies, stars
                                                                processing power.”
                and potentially even planets.

           •	   Performs seven times faster than
                                                                Choosing the right partners
                COSMA3, and 50 times faster than                The Institute received proposals from eight leading vendors, including
                COSMA2, which has now been                      Dell, HP and Viglen, as well as a joint bid from IBM and OCF, a
                decommissioned.                                 specialist provider of HPC server and storage clusters.
           •	   Uses the same amount of electricity as
                COSMA2, and does not require air cooling        “What we liked about the IBM offer was that it could deliver all the
                – reducing overall data centre energy           infrastructure – servers, storage and software – from a single vendor,”
                consumption by 60 kW.
                                                                comments Dr Heck. “We had allowed vendors to bid for the different
           •	   Achieves a Linpack benchmark of 91              elements separately, but the advantages of a coherent single-vendor
                percent efficiency, delivering more than        strategy were clear. We had also worked with OCF before, and we had
                400 megaflops per Watt. It is currently the
                UK’s greenest supercomputer and would
                                                                been impressed with the level of service they offered.”
                make 19th place on the November 2010
                worldwide Green500 list.                        Rapid, successful delivery
           •	   Helps Durham play a leading role in             The OCF team worked with the Institute’s in-house HPC specialists to
                national and international supercomputing       deliver, install and test the COSMA4 cluster. OCF used the PRINCE2
                consortia such as Virgo – utilising multiple    methodology to manage the project, which helped to accelerate the
                supercomputers to work on very large-
                scale cosmology projects.
                                                                testing phase and prepare COSMA4 for go-live in record time. OCF
                                                                also provided comprehensive training on the new IBM technologies,
                                                                and will continue to support the infrastructure in accordance with a
                                                                detailed service level agreement.

                                                                “The hardware and software integration from OCF was very smooth,”
                                                                says Dr Heck. “The OCF team is very knowledgeable, and provided
                                                                four days of invaluable intensive training on the system.”

                                                                Exploring the infrastructure
                                                                From the server perspective, COSMA4 is built on 220 IBM System x
                                                                iDataPlex dx360 M3 servers, each of which contains two Intel® Xeon®
                                                                X5650 processors running at 2.67 GHz. Each processor has six cores,
                                                                which add up to a total of 2,640 cores across the whole cluster. The
                                                                servers are supported by a storage infrastructure based around eight
                                                                IBM System Storage DS3500 disk systems, which provide 620 TB of
                                                                storage capacity. The IBM General Parallel File System (GPFS) is used
                                                                to provide rapid parallel access for multiple users, while IBM Tivoli
                                                                Storage Manager handles backups, and may also be used for policy-
                                                                based archiving for long-term storage in the near future.

                                                                “The IBM infrastructure has two vital advantages,” comments Dr
                                                                Heck. “First, the iDataPlex architecture provides a very dense compute
                                                                capacity in a small physical footprint, so it gives us a huge increase
                                                                in performance compared to our previous clusters without requiring
                                                                a move to a larger data centre. Second, it is water-cooled, which
                                                                significantly reduces the need for air conditioning, reducing energy
                                                                costs and improving our green computing profile.”
IBM Systems and Technology Group                                                                                             Education
Deep Computing




                                                             Space and energy
                                                             The iDataPlex and DS3500 racks are fitted with IBM Rear Door Heat
             Solution Components
                                                             eXchanger technology, which passes the hot air generated by the disks
             Software                                        and processors over a series of sealed coils filled with chilled water. As
             •	   IBM® General Parallel File System™
                                                             a result, the air expelled from the back of the rack is 3 °C colder than
             •	   IBM Tivoli® Storage Manager
                                                             the data centre’s ambient temperature, enabling the Institute to retire
             Servers                                         three of its seven air conditioning units and use the remaining units less
             •	   IBM System x® iDataPlex®                   intensively.
             •	   IBM System Storage® DS3500

             IBM Business Partner                            “Our data centre has an upper limit on energy consumption so it was
             •	   OCF                                        essential we procured a powerful but well balanced and energy-efficient
                                                             machine,” says Dr Heck. “Although COSMA4 is 50 times faster than
                                                             the COSMA2 cluster which it replaced, it only draws about the same
           “Our new server and                               amount of power. It also doesn’t require any air conditioning, so we
                                                             save about 60 kW in total data centre energy consumption.”
            storage cluster gives us
            the ability to experiment                        Green computing
            with vast, sophisticated                         According to Linpack benchmarks, COSMA4 is currently running
                                                             at 91 per cent efficiency, and has an energy efficiency of over 400
            models of the universe
                                                             megaflops per Watt of energy consumed. This level of energy efficiency
            and answer fundamental                           makes it currently the greenest supercomputer in the UK, and would
            questions about our cosmic                       put it in 19th place on the November 2010 worldwide Green500 list.
            environment.”
                                                             Massive performance
                                                             Most important of all, COSMA4 is seven times faster than its
             — Professor Carlos Frenk, Director of the
             Institute for Computational Cosmology, Durham   predecessor, COSMA3, which means that researchers at the Institute
             University                                      and their international collaborators can run more complex and
                                                             sophisticated simulations of the cosmos.

                                                             Professor Frenk comments: “It is very difficult to test theories about
                                                             the universe using traditional methods, as the scale is so large and the
                                                             algorithms are so complex. Our new server and storage cluster gives us
                                                             the ability to experiment with vast, sophisticated models of the universe
                                                             and answer fundamental questions about our cosmic environment –
                                                             how does gravity operate, for example, and how does the Universe
                                                             expand?”

                                                             Making an international contribution
                                                             COSMA4 already has 100 registered users and 240 TB of data, and
                                                             is preparing for a number of major international projects with other
                                                             supercomputing centres both within the UK and internationally.

                                                             Dr Heck concludes: “The launch of COSMA4 helps Durham
                                                             University maintain its status as one of the world’s leading cosmology
                                                             research centres, and enables us to play a major role in national
                                                             and international HPC initiatives such as the Virgo consortium.
                                                             The projects we run on COSMA4, whether they are internal or in
                                                             partnership with other academic institutions, are helping us to reveal
                                                             some of the universe’s oldest mysteries.”
For more information
To learn more about IBM software, contact your IBM sales
representative or visit: ibm.com

To learn more about products, services and solutions from OCF, visit:
ocf.co.uk




© Copyright IBM Corporation 2011

IBM United Kingdom Limited
PO Box 41
North Harbour
Portsmouth
Hampshire
PO6 3AU

Produced in the United Kingdom
May 2011
All Rights Reserved

IBM, the IBM logo, ibm.com, General Parallel File System, iDataPlex, System
Storage, System x and Tivoli are trademarks of International Business Machines
Corporation, registered in many jurisdictions worldwide. A current list of other IBM
trademarks is available on the Web at “Copyright and trademark information” at:
ibm.com/legal/copytrade.shtml.

Intel, the Intel logo, and Xeon are trademarks of Intel Corporation in the U.S. and/or
other countries.

Other company, product or service names may be trademarks, or service marks of
others.

IBM and OCF are separate companies and each is responsible for its own products.
Neither IBM nor OCF makes any warranties, express or implied, concerning the
other’s products.

References in this publication to IBM products, programs or services do not imply
that IBM intends to make these available in all countries in which IBM operates. Any
reference to an IBM product, program or service is not intended to imply that only
IBM’s product, program or service may be used. Any functionally equivalent product,
program or service may be used instead.

All customer examples cited represent how some customers have used IBM products
and the results they may have achieved. Actual environmental costs and performance
characteristics will vary depending on individual customer configurations and
conditions.

IBM hardware products are manufactured from new parts, or new and used parts.
In some cases, the hardware product may not be new and may have been previously
installed. Regardless, IBM warranty terms apply.

This publication is for general guidance only.

Photographs may show design models.

         Please Recycle


                                                               DCC03012-GBEN-01

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Durham University gains new insight into the evolution of the universe

  • 1. IBM Systems and Technology Group Education Deep Computing Durham University gains new insight into the evolution of the universe Building an eco-friendly high-performance computing cluster for cosmology research with IBM System x iDataPlex Durham University is the third oldest university in England after Overview Oxford and Cambridge, and has been a leading European centre of learning for over 1,000 years. With more than 14,000 students and Business challenge 3,800 staff, the University’s 16 colleges provide degree courses in a wide To maintain its position at the forefront of international research, the Institute for range of subjects across three faculties: Arts and Humanities, Social Computational Cosmology at Durham Science and Health, and Science. University wanted to develop a new high-performance computing cluster that Established in 2002, the University’s Institute for Computational would enable even more sophisticated simulations of the universe. With Cosmology has become a leading international centre for research constraints on data centre space, power into the origin and evolution of the universe, using high-performance and cooling, the Institute looked to base computing (HPC) clusters to simulate cosmological events and answer the new cluster on compact, energy- efficient technologies. some of the most fundamental questions in science: What were the first objects in the Universe? How do galaxies form? What is the nature of Solution dark matter and dark energy? Where does the large-scale structure of Working with OCF and IBM, the Institute designed and deployed COSMA4, a 25 the universe come from? What is the fate of the Universe? teraflop cluster based on water-cooled IBM® System x® iDataPlex® servers with “Along with engaging the general public and helping people to 2,640 Intel Xeon cores. IBM System understand their place in the cosmos, our research helps raise the Storage® DS3500 hardware provides 610 TB of storage capacity, which is managed profile of science in general,” says Professor Carlos Frenk, Director of by the IBM General Parallel File System™ the Institute for Computational Cosmology. “It serves as an important and IBM Tivoli® Storage Manager. factor in motivating young people to become scientists. There are also technological spin-offs of our work, in the form of better numerical algorithms and novel solutions to problems which have applications in many areas other than cosmology.” Computational cosmology Since its foundation, the Institute has run its simulations on a series of HPC clusters known as COSMA. COSMA2 and COSMA3 were both based on Sun servers and storage and the Solaris operating system, but as the field of computational cosmology developed, the need for a larger-scale solution became evident. “The level of detail in the models we use is continually increasing, so there’s a perpetual need for more processor power and data storage,” says Dr Lydia Heck, Senior Computer Manager. “In addition to running our own projects, we are also part of an international
  • 2. IBM Systems and Technology Group Education Deep Computing cosmology consortium called Virgo, which unites HPC resources from Business Benefits around the world to run simulations based on hundreds of terabytes of data. To meet these needs, we decided to build COSMA4 – a new • Enables simulations of universe models cluster that would provide at least 500 TB of storage and 25 teraflops of that provide unprecedented levels of detail – down to the level of galaxies, stars processing power.” and potentially even planets. • Performs seven times faster than Choosing the right partners COSMA3, and 50 times faster than The Institute received proposals from eight leading vendors, including COSMA2, which has now been Dell, HP and Viglen, as well as a joint bid from IBM and OCF, a decommissioned. specialist provider of HPC server and storage clusters. • Uses the same amount of electricity as COSMA2, and does not require air cooling “What we liked about the IBM offer was that it could deliver all the – reducing overall data centre energy infrastructure – servers, storage and software – from a single vendor,” consumption by 60 kW. comments Dr Heck. “We had allowed vendors to bid for the different • Achieves a Linpack benchmark of 91 elements separately, but the advantages of a coherent single-vendor percent efficiency, delivering more than strategy were clear. We had also worked with OCF before, and we had 400 megaflops per Watt. It is currently the UK’s greenest supercomputer and would been impressed with the level of service they offered.” make 19th place on the November 2010 worldwide Green500 list. Rapid, successful delivery • Helps Durham play a leading role in The OCF team worked with the Institute’s in-house HPC specialists to national and international supercomputing deliver, install and test the COSMA4 cluster. OCF used the PRINCE2 consortia such as Virgo – utilising multiple methodology to manage the project, which helped to accelerate the supercomputers to work on very large- scale cosmology projects. testing phase and prepare COSMA4 for go-live in record time. OCF also provided comprehensive training on the new IBM technologies, and will continue to support the infrastructure in accordance with a detailed service level agreement. “The hardware and software integration from OCF was very smooth,” says Dr Heck. “The OCF team is very knowledgeable, and provided four days of invaluable intensive training on the system.” Exploring the infrastructure From the server perspective, COSMA4 is built on 220 IBM System x iDataPlex dx360 M3 servers, each of which contains two Intel® Xeon® X5650 processors running at 2.67 GHz. Each processor has six cores, which add up to a total of 2,640 cores across the whole cluster. The servers are supported by a storage infrastructure based around eight IBM System Storage DS3500 disk systems, which provide 620 TB of storage capacity. The IBM General Parallel File System (GPFS) is used to provide rapid parallel access for multiple users, while IBM Tivoli Storage Manager handles backups, and may also be used for policy- based archiving for long-term storage in the near future. “The IBM infrastructure has two vital advantages,” comments Dr Heck. “First, the iDataPlex architecture provides a very dense compute capacity in a small physical footprint, so it gives us a huge increase in performance compared to our previous clusters without requiring a move to a larger data centre. Second, it is water-cooled, which significantly reduces the need for air conditioning, reducing energy costs and improving our green computing profile.”
  • 3. IBM Systems and Technology Group Education Deep Computing Space and energy The iDataPlex and DS3500 racks are fitted with IBM Rear Door Heat Solution Components eXchanger technology, which passes the hot air generated by the disks Software and processors over a series of sealed coils filled with chilled water. As • IBM® General Parallel File System™ a result, the air expelled from the back of the rack is 3 °C colder than • IBM Tivoli® Storage Manager the data centre’s ambient temperature, enabling the Institute to retire Servers three of its seven air conditioning units and use the remaining units less • IBM System x® iDataPlex® intensively. • IBM System Storage® DS3500 IBM Business Partner “Our data centre has an upper limit on energy consumption so it was • OCF essential we procured a powerful but well balanced and energy-efficient machine,” says Dr Heck. “Although COSMA4 is 50 times faster than the COSMA2 cluster which it replaced, it only draws about the same “Our new server and amount of power. It also doesn’t require any air conditioning, so we save about 60 kW in total data centre energy consumption.” storage cluster gives us the ability to experiment Green computing with vast, sophisticated According to Linpack benchmarks, COSMA4 is currently running at 91 per cent efficiency, and has an energy efficiency of over 400 models of the universe megaflops per Watt of energy consumed. This level of energy efficiency and answer fundamental makes it currently the greenest supercomputer in the UK, and would questions about our cosmic put it in 19th place on the November 2010 worldwide Green500 list. environment.” Massive performance Most important of all, COSMA4 is seven times faster than its — Professor Carlos Frenk, Director of the Institute for Computational Cosmology, Durham predecessor, COSMA3, which means that researchers at the Institute University and their international collaborators can run more complex and sophisticated simulations of the cosmos. Professor Frenk comments: “It is very difficult to test theories about the universe using traditional methods, as the scale is so large and the algorithms are so complex. Our new server and storage cluster gives us the ability to experiment with vast, sophisticated models of the universe and answer fundamental questions about our cosmic environment – how does gravity operate, for example, and how does the Universe expand?” Making an international contribution COSMA4 already has 100 registered users and 240 TB of data, and is preparing for a number of major international projects with other supercomputing centres both within the UK and internationally. Dr Heck concludes: “The launch of COSMA4 helps Durham University maintain its status as one of the world’s leading cosmology research centres, and enables us to play a major role in national and international HPC initiatives such as the Virgo consortium. The projects we run on COSMA4, whether they are internal or in partnership with other academic institutions, are helping us to reveal some of the universe’s oldest mysteries.”
  • 4. For more information To learn more about IBM software, contact your IBM sales representative or visit: ibm.com To learn more about products, services and solutions from OCF, visit: ocf.co.uk © Copyright IBM Corporation 2011 IBM United Kingdom Limited PO Box 41 North Harbour Portsmouth Hampshire PO6 3AU Produced in the United Kingdom May 2011 All Rights Reserved IBM, the IBM logo, ibm.com, General Parallel File System, iDataPlex, System Storage, System x and Tivoli are trademarks of International Business Machines Corporation, registered in many jurisdictions worldwide. A current list of other IBM trademarks is available on the Web at “Copyright and trademark information” at: ibm.com/legal/copytrade.shtml. Intel, the Intel logo, and Xeon are trademarks of Intel Corporation in the U.S. and/or other countries. Other company, product or service names may be trademarks, or service marks of others. IBM and OCF are separate companies and each is responsible for its own products. Neither IBM nor OCF makes any warranties, express or implied, concerning the other’s products. References in this publication to IBM products, programs or services do not imply that IBM intends to make these available in all countries in which IBM operates. Any reference to an IBM product, program or service is not intended to imply that only IBM’s product, program or service may be used. Any functionally equivalent product, program or service may be used instead. All customer examples cited represent how some customers have used IBM products and the results they may have achieved. Actual environmental costs and performance characteristics will vary depending on individual customer configurations and conditions. IBM hardware products are manufactured from new parts, or new and used parts. In some cases, the hardware product may not be new and may have been previously installed. Regardless, IBM warranty terms apply. This publication is for general guidance only. Photographs may show design models. Please Recycle DCC03012-GBEN-01