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Alleviation of Malnutrition through
Breeding and Bio-engineering
approaches
MANDEEP SINGH
11047
Hidden Hunger
Impairs mental and physical development of
children and adolescents:
 Iron
 Zinc
 Vitamin A
 Protein
Lack of critical micronutrients in the diet:
 Lower IQ
 Reduced productivity
 Increased risk of illness
 Stunting
 Blindness
Hidden Hunger – Distribution
Severity of the most common micronutrient deficiencies
(vitamin A, iron and zinc)
http://www.harvestplus.org
Alarmingly
High
Vitamin and Mineral Nutrition
Information System (VMNIS)
 Globally 20 percent of maternal deaths are attributed to anemia
 58 and 51 percent of children under 5 years old were anemic in 2016 in
Sub-Saharan Africa and South Asia, respectively
 5-20 percent prevalence of night blindness in South East Asia
 Nearly 250 million preschool children are Vitamin A deficient
 Zinc deficiency is variable and ranges from 15-50 percent
Biofortification
 Greek word “bios” means “life”
 Latin word “fortificare” means “make strong”
MAKE LIFE STRONG!
 Biofortification is the process by which the
nutritional quality of food crops is improved through
agronomic practices, conventional plant breeding,
modern biotechnology
- World Health Organization
Success Determined By
 Biofortified crop must be high yielding and profitable to farmer
 Crop must be acceptable to both farmers and consumers
 Amount of staple food actually consumed on daily basis by age and
gender
 Nutrient losses in post harvest phase
 Bioavailability of the nutrient
• Iron-biofortification of rice, beans, sweet potato, cassava and legumes;
• Zinc-biofortification of wheat, rice, beans, sweet potato and maize;
• Provitamin A carotenoid-biofortification of sweet potato, maize and
cassava;
• Amino Acid and Protein-biofortification of sourghum and cassava.
Appraches for Biofortification
 Agronomic
 Conventional Breeding
 Genetic Modification
Agronomic Biofortification
 Cakmak (2008)- Increased uptake and accumulation of Zn in whole wheat by raising zinc
fertilizers addition to soil
 White et al., 2011- increased Zn supply to Peas increases concentration of bioavailable Zn
in Pea seeds
Plant Growth Promoting Rhizobacteria (PGPR)
 Supplementary measure
 Tricoderma asperellum, Methylobacterium oryzae, Pseudomonas putida,
Pseudomonas fluroscens, Azospirillum lipoferum
 Cyanobacteria- Anabaena spp., Calothrix spp.
 Sharma et al., 2013 – Enhanced Fe content in Rice
Limitation
 mostly applicable only for increasing Fe content
Limitations
 Expensive
 Require regular sprays
 Bulkiness of fertilisers hinders in transportation
 Vitamin A, proteins and Fe fortification is not possible by agronomic
means
 Adverse environmental effect
Conventional Breeding
P1 × P2
I I I I I I I I I I I I I I I I
I
I I I I I I I I I I I I I
• Most trusted approach
• Genetic variations available in the crop
gene pool is utilized
• Generally Prebreeding is required
• Pedigree or Backcross method
Genotypic variation for Fe
Crop Mean (mg/kg) Range (mg/kg) Samples
Rice 12.2 6.3-24.4 1138
Pearl millet 45.5 30.1-75.7 120
Maize 23.8 9.6-63.2 1814
Cassava 9.6 7.7-12.6 26
Bean 55 34-89 1000
Crop Mean (mg/kg) Range (mg/kg) Samples
Rice 25.4 14-58 1138
Pearl millet 43.9 24.5-64.8 120
Maize 18.5 13-24 1814
Cassava 6.4 4.4-8.6 26
Bean 35 21-54 1050
Genotypic variation for Zn
(White and Broadlay, 2005)
Plant Breeding Process
Lines with characteristics of interest for ……………….
Farmer
High yields
Resistance to pests
Stress tolerant
Consumer
Appearance
Taste
Cooking time
Nutritionist
High nutritional
Value
Bioavailability
Ideally:
With desirable
characteristics for the
farmer, consumer and
nutritionist
Plant Breeding Process
X X
Adapted from: Global Food Security 12 (2017)
Success List
 Orange fleshed sweet potato
• β-carotene enriched
• Released in Uganda
• Developed by HarvestPlus
• Two varieties- Ejumula and Kakamega (2004)
• World food prize, 2016
 Quality Protein Maize
• Increased tryptophan and lysine
• ‘opaque-2’ and ‘floury-2’ mutants
• Released in several countries
• In India- Shakti, Shaktimaan 1, Vivek QPM-9, HQPM-7
• World food prize, 2000
 Iron Beans
• Fe enriched Phaseolus vulgaris
• Developed by International Centre for Tropical Agriculture (CIAT)
• Vareities- NUA35, NUA56
• Released in Latin America and Central Africa
 Pearlmillet
• Fe enriched Pearlmillet
• Developed by HarvestPlus parterned with Nirmal seeds
• Released in India
• Vareities- Dhanshakti, ICMH 1202 (ICRISAT)
 Zinc Rice
• ‘Brri dhan-62’ – world’s first zinc rice
• Developed by Bangladesh Rice Research Institute
Limitations
 Slow and tedious
 Linkage drag and undesirable characters
 Lack of diversity for the target trait
 Generally most of the sources are unadapted
 Polygenic
 Low heritability
Breeding if possible, Modifying if
Necessary
Genetic Modification
(Maximum researched and minimum utilised)
 When there is limited or no genetic variation in nutrient content is
present
 Unlimited genepool
 No linkage drag
 Simultaneous incorporation of genes involved in
1. Micronutrient concentration
2. Bioavailability
3. Reduction in antinutrients
Success List
 Golden rice
• β-carotene enriched
• Ingo Potrykus and Peter Beyer
• Taipei 309- Japonica rice line was used
• Rice endosperm specific promoters
• 1.6 mg/g of rice
Geranylgeranyl diphosphate
phytoene
lycopene
α-carotene β-carotene
psy
crt1
lcyGolden Rice 2- psy gene from maize
37mg/g of rice
 Cassava
• β-carotene, Fe and protein enriched
• Developed by BioCassava Plus (BC+) project funded by
Bill and Melinda Gates Foundation
• FEA1 gene from Chlamydomonas reinhardtii for iron
uptake
• β-carotene- 30 fold more than normal
• Fe content- 30 mg/g
Glyceraldehyde-3-phosphate
GGDP
Phytoene
β-carotene
DXS
crtB
Phase II under Dr. Martin Fragene, director BioCassava
Plus at Donald Danforth Centre
Garg et al., 2018
Utilization of different genes for biofortification by transgenic means
Garg et al., 2018
Representation of
reported
biofortified crops
by Transgenic,
Agronomic, and
Breeding means
Frontiers in Nutrition | www.frontiersin.org
Case study (Conventional breeding)
Materials
 Parental inbreds viz., HKI161, HKI163, HKI193-1,and HKI193-2 of four QPM
hybrids, HQPM1 (HKI193-1× HKI163), HQPM4 (HKI193-2 × HKI161),
HQPM5 (HKI163 × HKI161) and HQPM7 (HKI193-1 × HKI161)
 Donors- HP704-22 and HP704-23
 Recipient inbreds- o2o2 crtRB1+crtRB1+ lcyE+lcyE+
 Donor parents- O2O2 crtRB1crtRB1 lcyElcyE
 Four crosses were made- cross-I (HKI161 × HP704-23), cross-II (HKI163 ×
HP704-22), cross-III (HKI193-1 × HP704- 23), cross-IV (HKI193-2 × HP704-
22)
MABB
MARKERS USED
o2 - phi057
crtRB1 - 3′TE InDel
lcyE - 5′TE InDel
Results
Morphological characterization of improved lines with their
respective recurrent parents
Biochemical analysis of introgressed inbreds
Provitamin A concentration in original and reconstituted hybrids
Reconstituted hybrids
were at par in case of
lysine and tryptophan
content but having
higher amount of
provitamin A content
(9.25 to 12.88μg/g)
Case study (Transgenic approach)
Pathway
 Phytosiderophores - Nicotianamine (NA) (Internal) and 2′-deoxymugenic
acid (DMA) (External)
 Metal transpoters – 1. Fe2+ : OsYSL15
2. Fe2+ and Zn2+ : OsIRT1
3. Zn2+ : OsZIP1
S-adenosylmethionine (SAM)
Nicotianamine (NA)
2′-deoxymugenic acid (DMA)
Nicotianamine synthase (NAS)
Nicotianamine aminotransferase (NAAT)
Materials and Methods
 Transgenic plants development expressing both OsNAS1 and HvNAATB
 T2
seeds were grown on medium containing 100 μM FeCl3,200 μM FeCl3
and 300 μM FeCl3 separately along with wild type as control
 T3
seeds were grown on 100 μM FeCl3 and later transferred to 10 μM
CdCl2
 Inductively coupled plasma mass spectrometry (ICP-MS) – for checking
metal content in plant
 HPLC-electrospray ionization (ESI)-time of flight (TOF)-MS – for checking
NA and DMA concentration
 Quantitative RT PCR – for checking endogenous gene expression of
transformed genes
Results
NA and DMA levels in roots, leaves and seeds
Fe concentration
Zn concentration
Modulation of metal transporters
(Homeostatic regulation of metal ions)
Cadmium concentration
Findings in a nutshell
 Increased levels of NA and DMA is positively correlated with levels of Fe and
Zn in rice endosperm
 Fe levels achieved : 22-57 mg/g of dry weight
(1.4-3.7 mg/g in wild type)
 Zn levels achieved : 22-78 mg/g of dry weight
(1.2-4.2 mg/g in wild type)
 Homeostatic regulation is achieved by modulating concentration of metal
transporters to avoid its toxicity
 Cadmium (toxic metal) levels are significantly reduced due to decrease in
cadmium carrier OsLCT1
How do we know that biofortification works?
Q#3: Does consumption of biofortified foods improve
micronutrient status of women and children?
Efficacy studies Effectiveness studies
Q#2: Are the micronutrients in the biofortified food crops
bioavailable (absorbed and utilized) when consumed by the
target population group(s)?
Anti-nutrient analysis, In vitro &
animal bioavailability models
Bioavailability studies in
humans
Q#1:Does the biofortified crop contribute >30% EAR* of
provitamin A, iron or zinc to target population?
Post harvest nutrient retention
studies
Background food processing
and dietary intake studies
T
i
m
e
P
r
o
g
r
e
s
s
i
o
n
Who promotes biofotification?
India
Biofortification
Program
Conclusion
Although the knowledge gaps and tasks ahead
may seem daunting, investment in
biofortification is a cost-effective approach to
ensure a more nourishing future
Thank You
“Health comes from the farm, not the pharmacy”

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Alleviation of malnutrition through breeding and bio engineering approaches

  • 1. Alleviation of Malnutrition through Breeding and Bio-engineering approaches MANDEEP SINGH 11047
  • 2.
  • 3. Hidden Hunger Impairs mental and physical development of children and adolescents:  Iron  Zinc  Vitamin A  Protein Lack of critical micronutrients in the diet:  Lower IQ  Reduced productivity  Increased risk of illness  Stunting  Blindness
  • 4. Hidden Hunger – Distribution Severity of the most common micronutrient deficiencies (vitamin A, iron and zinc) http://www.harvestplus.org Alarmingly High
  • 5. Vitamin and Mineral Nutrition Information System (VMNIS)  Globally 20 percent of maternal deaths are attributed to anemia  58 and 51 percent of children under 5 years old were anemic in 2016 in Sub-Saharan Africa and South Asia, respectively  5-20 percent prevalence of night blindness in South East Asia  Nearly 250 million preschool children are Vitamin A deficient  Zinc deficiency is variable and ranges from 15-50 percent
  • 6.
  • 7. Biofortification  Greek word “bios” means “life”  Latin word “fortificare” means “make strong” MAKE LIFE STRONG!
  • 8.  Biofortification is the process by which the nutritional quality of food crops is improved through agronomic practices, conventional plant breeding, modern biotechnology - World Health Organization
  • 9. Success Determined By  Biofortified crop must be high yielding and profitable to farmer  Crop must be acceptable to both farmers and consumers  Amount of staple food actually consumed on daily basis by age and gender  Nutrient losses in post harvest phase  Bioavailability of the nutrient
  • 10. • Iron-biofortification of rice, beans, sweet potato, cassava and legumes; • Zinc-biofortification of wheat, rice, beans, sweet potato and maize; • Provitamin A carotenoid-biofortification of sweet potato, maize and cassava; • Amino Acid and Protein-biofortification of sourghum and cassava.
  • 11. Appraches for Biofortification  Agronomic  Conventional Breeding  Genetic Modification
  • 12. Agronomic Biofortification  Cakmak (2008)- Increased uptake and accumulation of Zn in whole wheat by raising zinc fertilizers addition to soil  White et al., 2011- increased Zn supply to Peas increases concentration of bioavailable Zn in Pea seeds
  • 13. Plant Growth Promoting Rhizobacteria (PGPR)  Supplementary measure  Tricoderma asperellum, Methylobacterium oryzae, Pseudomonas putida, Pseudomonas fluroscens, Azospirillum lipoferum  Cyanobacteria- Anabaena spp., Calothrix spp.  Sharma et al., 2013 – Enhanced Fe content in Rice Limitation  mostly applicable only for increasing Fe content
  • 14. Limitations  Expensive  Require regular sprays  Bulkiness of fertilisers hinders in transportation  Vitamin A, proteins and Fe fortification is not possible by agronomic means  Adverse environmental effect
  • 15. Conventional Breeding P1 × P2 I I I I I I I I I I I I I I I I I I I I I I I I I I I I I I • Most trusted approach • Genetic variations available in the crop gene pool is utilized • Generally Prebreeding is required • Pedigree or Backcross method
  • 16. Genotypic variation for Fe Crop Mean (mg/kg) Range (mg/kg) Samples Rice 12.2 6.3-24.4 1138 Pearl millet 45.5 30.1-75.7 120 Maize 23.8 9.6-63.2 1814 Cassava 9.6 7.7-12.6 26 Bean 55 34-89 1000 Crop Mean (mg/kg) Range (mg/kg) Samples Rice 25.4 14-58 1138 Pearl millet 43.9 24.5-64.8 120 Maize 18.5 13-24 1814 Cassava 6.4 4.4-8.6 26 Bean 35 21-54 1050 Genotypic variation for Zn (White and Broadlay, 2005)
  • 17. Plant Breeding Process Lines with characteristics of interest for ………………. Farmer High yields Resistance to pests Stress tolerant Consumer Appearance Taste Cooking time Nutritionist High nutritional Value Bioavailability
  • 18. Ideally: With desirable characteristics for the farmer, consumer and nutritionist Plant Breeding Process X X
  • 19. Adapted from: Global Food Security 12 (2017)
  • 20. Success List  Orange fleshed sweet potato • β-carotene enriched • Released in Uganda • Developed by HarvestPlus • Two varieties- Ejumula and Kakamega (2004) • World food prize, 2016  Quality Protein Maize • Increased tryptophan and lysine • ‘opaque-2’ and ‘floury-2’ mutants • Released in several countries • In India- Shakti, Shaktimaan 1, Vivek QPM-9, HQPM-7 • World food prize, 2000
  • 21.  Iron Beans • Fe enriched Phaseolus vulgaris • Developed by International Centre for Tropical Agriculture (CIAT) • Vareities- NUA35, NUA56 • Released in Latin America and Central Africa  Pearlmillet • Fe enriched Pearlmillet • Developed by HarvestPlus parterned with Nirmal seeds • Released in India • Vareities- Dhanshakti, ICMH 1202 (ICRISAT)  Zinc Rice • ‘Brri dhan-62’ – world’s first zinc rice • Developed by Bangladesh Rice Research Institute
  • 22. Limitations  Slow and tedious  Linkage drag and undesirable characters  Lack of diversity for the target trait  Generally most of the sources are unadapted  Polygenic  Low heritability
  • 23. Breeding if possible, Modifying if Necessary
  • 24. Genetic Modification (Maximum researched and minimum utilised)  When there is limited or no genetic variation in nutrient content is present  Unlimited genepool  No linkage drag  Simultaneous incorporation of genes involved in 1. Micronutrient concentration 2. Bioavailability 3. Reduction in antinutrients
  • 25. Success List  Golden rice • β-carotene enriched • Ingo Potrykus and Peter Beyer • Taipei 309- Japonica rice line was used • Rice endosperm specific promoters • 1.6 mg/g of rice Geranylgeranyl diphosphate phytoene lycopene α-carotene β-carotene psy crt1 lcyGolden Rice 2- psy gene from maize 37mg/g of rice
  • 26.  Cassava • β-carotene, Fe and protein enriched • Developed by BioCassava Plus (BC+) project funded by Bill and Melinda Gates Foundation • FEA1 gene from Chlamydomonas reinhardtii for iron uptake • β-carotene- 30 fold more than normal • Fe content- 30 mg/g Glyceraldehyde-3-phosphate GGDP Phytoene β-carotene DXS crtB Phase II under Dr. Martin Fragene, director BioCassava Plus at Donald Danforth Centre
  • 27. Garg et al., 2018
  • 28. Utilization of different genes for biofortification by transgenic means Garg et al., 2018
  • 29. Representation of reported biofortified crops by Transgenic, Agronomic, and Breeding means Frontiers in Nutrition | www.frontiersin.org
  • 31. Materials  Parental inbreds viz., HKI161, HKI163, HKI193-1,and HKI193-2 of four QPM hybrids, HQPM1 (HKI193-1× HKI163), HQPM4 (HKI193-2 × HKI161), HQPM5 (HKI163 × HKI161) and HQPM7 (HKI193-1 × HKI161)  Donors- HP704-22 and HP704-23  Recipient inbreds- o2o2 crtRB1+crtRB1+ lcyE+lcyE+  Donor parents- O2O2 crtRB1crtRB1 lcyElcyE  Four crosses were made- cross-I (HKI161 × HP704-23), cross-II (HKI163 × HP704-22), cross-III (HKI193-1 × HP704- 23), cross-IV (HKI193-2 × HP704- 22)
  • 32. MABB MARKERS USED o2 - phi057 crtRB1 - 3′TE InDel lcyE - 5′TE InDel
  • 33. Results Morphological characterization of improved lines with their respective recurrent parents
  • 34. Biochemical analysis of introgressed inbreds
  • 35. Provitamin A concentration in original and reconstituted hybrids Reconstituted hybrids were at par in case of lysine and tryptophan content but having higher amount of provitamin A content (9.25 to 12.88μg/g)
  • 37. Pathway  Phytosiderophores - Nicotianamine (NA) (Internal) and 2′-deoxymugenic acid (DMA) (External)  Metal transpoters – 1. Fe2+ : OsYSL15 2. Fe2+ and Zn2+ : OsIRT1 3. Zn2+ : OsZIP1 S-adenosylmethionine (SAM) Nicotianamine (NA) 2′-deoxymugenic acid (DMA) Nicotianamine synthase (NAS) Nicotianamine aminotransferase (NAAT)
  • 38. Materials and Methods  Transgenic plants development expressing both OsNAS1 and HvNAATB  T2 seeds were grown on medium containing 100 μM FeCl3,200 μM FeCl3 and 300 μM FeCl3 separately along with wild type as control  T3 seeds were grown on 100 μM FeCl3 and later transferred to 10 μM CdCl2  Inductively coupled plasma mass spectrometry (ICP-MS) – for checking metal content in plant  HPLC-electrospray ionization (ESI)-time of flight (TOF)-MS – for checking NA and DMA concentration  Quantitative RT PCR – for checking endogenous gene expression of transformed genes
  • 39. Results NA and DMA levels in roots, leaves and seeds
  • 42. Modulation of metal transporters (Homeostatic regulation of metal ions)
  • 44. Findings in a nutshell  Increased levels of NA and DMA is positively correlated with levels of Fe and Zn in rice endosperm  Fe levels achieved : 22-57 mg/g of dry weight (1.4-3.7 mg/g in wild type)  Zn levels achieved : 22-78 mg/g of dry weight (1.2-4.2 mg/g in wild type)  Homeostatic regulation is achieved by modulating concentration of metal transporters to avoid its toxicity  Cadmium (toxic metal) levels are significantly reduced due to decrease in cadmium carrier OsLCT1
  • 45. How do we know that biofortification works? Q#3: Does consumption of biofortified foods improve micronutrient status of women and children? Efficacy studies Effectiveness studies Q#2: Are the micronutrients in the biofortified food crops bioavailable (absorbed and utilized) when consumed by the target population group(s)? Anti-nutrient analysis, In vitro & animal bioavailability models Bioavailability studies in humans Q#1:Does the biofortified crop contribute >30% EAR* of provitamin A, iron or zinc to target population? Post harvest nutrient retention studies Background food processing and dietary intake studies T i m e P r o g r e s s i o n
  • 47. Conclusion Although the knowledge gaps and tasks ahead may seem daunting, investment in biofortification is a cost-effective approach to ensure a more nourishing future
  • 48. Thank You “Health comes from the farm, not the pharmacy”