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Mutations
A   mutation is a mistake made when the
  cell is copying DNA
 If a gene in one cell is altered it is passed
  on to every cell that develops.
 2 types
   Gene   mutations-produce a change in a singe
    gene
   Chromosomal mutations-produce changes in a
    whole chromosome
Gene Mutations
 Point   Mutations
   Involve changes in one or a few nucleotides
   Occur at a single point in the DNA sequence

   Occur during replication

   3 types
      Substitution

      Insertion

      deletion
Substitutions
 One  base is changed to a different base
 Affect one amino acid
 Sometimes have no affect at all
Insertions and Deletions
A  base is inserted or removed from the
  DNA sequence
 Bases are still read in groups of 3 but now
  those groupings shift in every codon that
  follows the mutation
Insertions and Deletions
 Also called “framshift mutations” because
  they shift the reading frame of the genetic
  mutation
 Changes every amino acid after the point
  of mutuation
 Can change a protein so much it alters its
  function
Chromosomal Mutations
 Involves changes in the number or
  structure of chromosome.
 These mutations can change the location
  of genes on chromosomes and can even
  change the number of copies of some
  genes.
 4 types: deletion, duplication, inversion,
  translocation
Deletion
 Loss   of all or part of a chromosome
Duplication
 Produces
         an extra copy of all or part of a
 chromosome
Inversion
 Reverses
         the direction of parts of a
 chromosome
Translocation
 Partof one chromosome breaks off and
 attaches to another
Effects of Mutations
   Genetic   material can be altered by natural
      events or by artificial means.

      The resulting mutations may or may not affect
      an organism.

      Some mutations that affect individual
      organisms can also affect a species or even an
      entire ecosystem.
Mutagens
 Some    mutations arise from mutagens,
  chemical or physical agents in the
  environment.
 Chemical Mutagens Examples: pesticides,
  tobacco, smoke,environmental pollutants
 Physical:x-rays, ultraviolet
  light,electromagnetic radiation
 If the mutagen interacts with DNA they
  can produce mutations at high rates.
Harmful and Helpful
 Whether   a mutation is negative or
 beneficial depends on how its DNA
 changes relative to the organism’s
 situation.
Harmful                 Helpful
 Some   cancers           new  or altered
 genetic disorders.        functions
 Sickle cell disease      polyploidy.
     Point mutation           An extra set of
                                chromosomes
                               Larger and stronger
                                than diploid plants
Prokaryotic Gene Regulation
 Prokaryotes  produce only those genes
  needed to function by doing this
  prokaryotes can respond to changes in
  their environment
 DNA-binding proteins in prokaryotes
  regulate genes by controlling transcription.
Prokaryotic Gene Regulation
 DNA-binding  proteins in prokaryotes
  regulate genes by controlling transcription.
 The genes in bacteria are organized into
  operons.
 An operon is a group of genes that are
  regulated together.
Lac Operon
 Lactose is made of Glucose and
  Galactose
 A cell must bring lactose across its
  membrane then break the bond
    Performed   by a protein called the lac operon
 If lactose is the only food source it must
  make proteins to break these bonds
 If on another food source it has no need
  for these proteins
Promoters and Operators
 The operon has 3 genes
 On one side of these genes there are 2
  regulatory genes
   Promoter-   RNA polymerase binds here to begin
    transcription
   Operator-DNA lac opressor (blocker) can bind
    here to stop production
Turning Off
 When   lactose is not present the lac
  repressor binds to the O region blocking
  transciption
 This switches the operon “off”
Turning On
 Lac   repressor has a place for lactose to
  bind
 When lactose is present it bonds to this
  site and makes the repressor fall off
 RNA polymerase can now bind to the
  promoter and begin transcription
 If lactose is present it is automatically
  turned “on”
Eukaryotic Gene Regulation
 TATA   Box
  Found  just before a gene
  Marks the point just before a gene begins to
   help guide RNA polymerase into the right
   position
Transcription Factors
 Transcription factors regulate gene
  expression at the transcription level
 Can control the expression of genes
   Examples:
      enhance  transcription by opening up tightly packed
       chromatin
      attract RNA polymerase

      block access to certain genes

 Multiple
        factors must bind before RNA
 polymerase can attach to the promoter
Cell Specialization & RNA Interference

 Complex  gene regulation in eukaryotes is
  what makes specialization possible.
 Small RNA molecules that do not belong
  to any major group ( mRNA,tRNA,rRNA)
  are found in the cell.
 These RNA molecules interfere with
  mRNA and control gene expression
RNA Interference
 Blocking
         gene expression by means of an
 miRNA silencing complex is known as
 RNA interference
   the small interfering RNA molecules fold into
    double-stranded hairpin loops
   the “Dicer” enzyme cuts loops into microRNA
   miRNA pieces attaches to a cluster of proteins
    called the silencing complex
   This destroys any mRNA containing a
    sequence that is complementary to the miRNA
RNA Interference in pictures
Genetic Development
 differentsets of genes are regulated by
  transcription factors and repressors.
 Gene regulation helps cells undergo
  differentiation, becoming specialized in
  structure and function.
 Homeotic genes, regulates organs that
  develop in specific parts of the body.
   Lewis grew a fly with a leg in place of an
    antennae!
Homeobox
 Homeobox    genes code for transcription
 factors that activate other genes that are
 important in cell development and
 differenetiation
  Code   for legs and wings in fruit flies
Hox Genes
 Homeobox genes known as Hox genes determine the body plan of
  an embryo
 They are arranged in the order in which they are expressed
       Anterior to posterior
   A mutation in these genes can change the order of the body or
    what parts develop
Environmental Influences
 Temperature,salinity,and   nutrient
 availibility can influence gene expression
   Lac  operon in e.coli
   Alligator Eggs

   Metamorphosis
Genome
 Fullset of genetic information that an
  organism carries in its DNA.
 Shows us what makes us uniquely human
Karyotype
 Shows the complete diploid set of
 chromosomes grouped together in pairs,
 arranged in order of decreasing size.
Karyotype
 Biologists photograph the cells during
  mitosis so the chromosomes are
  condensed and easy to view
 Scientists then

  cut out the
  chromosomes and
  arrange them
Chromosomes
 Humans    have 46 chromosomes grouped
  together in 23 pairs
 44 of the chromosomes are autosomal
  chromosomes (autosomes)
 2 of the 46 chromosomes are sex
  chromosomes
   Females have 2 x chromosomes
   Males have 2 y chromosomes
Interesting…..

   The human Y chromosome
    is much smaller than the X
    chromosome and contains
    only about 140 genes, most
    of which are associated with
    male sex determination and
    sperm development
       More than 1200 genes are
        found on the X
        chromosome, some of which
        are shown.
Chromosomes
A sex linked gene is a gene located on a
 sex chromosome
  Genes  on the y chromosome are found only in
   males and are passed directly from father to
   son
  Genes on the x chromosome are found in both
   sexes but tend to occur more often in males
Color Blindness
 Humans    have 3 genes for colorblindness
  all on the x chromosome
 A defective allele for any of these genes
  results in color blindness for males about
  1 in 12 males
 In order for this to be expressed in
  females they need an effective allele on
  both of their x chromosomes about 1 in
  200
If one X chromosome is enough, how do
females cope with having 2?
 Mostof the genes in 1 x chromosome are
 turned off
   This  forms a dense area in the nucleus called a
     Barr Body
X inactivation happens in other mammals
 as well
Spotted Cats!
   In cats a gene that codes for
    the color of spot is located on
    the X chromosome.
        One x may have an allele for
         orange spots, and one x may
         have an allele for black spots
   In cells in some parts of the
    body, one X chromosome is
    switched off. In other parts of
    the body, the other X
    chromosome is switched off.
    As a result, the cat’s fur has a
    mixture of orange and black
    spots.
Pedigree
 Analyzes  the pattern of inheritance
  followed by a particular trait
 Shows the relationship within a family
 Based on a pedigree, you can often
  determine if an allele for a trait is dominant
  or recessive, autosomal or sex-linked.
 This  pedigree shows the inheritence of the
  white forelock trait which is dominant
 Grandfather has the trait
 2 of his 3 children have the trait
 3 of the 5 grandchildren have the trait
 Since every child does not have the trait
  Grandfather must be heterozygous
 The children and grandchildren without the
  trait are homozygous recessive
Genetic Disorders
 The  molecules present affect the traits we
  display/have
 The genotype correlates to the phenotype
 Genetic Disorders are molecular
   DNA  is altered, changing the sequence of
    amino acids, this changes the proteins
    produced, and directly affects the phenotype
Sickle Cell Anemia
 Defective   allele for
  beta globin
 This forces cells into
  a distinct, rigid, sickle
  shape
 The cells get stuck in
  capillaries and can
  damage tissues and
  organs
Cystic Fibrosis
 Results from the deletion of just 3 bases
 Phenylalanine is missing from proteins,
 Phen. Normally lets Cl pass through
  membranes
 Without Cl the body’s tissues malfunction
 Produces digestive problems,thick heavy
  mucus, labored breathing
Cystic Fibrosis
 Recessive   Trait
   Meaning you need to be homozygous recessive
   to have CF
Huntington’s Disease
 Caused  by a dominant allele for a protein
 found in brain cells
   Causes    a long string of the codon CAG
 Symptoms
   Mental deterioration
   uncontrollable movements

   Does not present until middle age
     The   longer the string of CAG the earlier it appears

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13 and 14 powerpoint

  • 1.
  • 2. Mutations A mutation is a mistake made when the cell is copying DNA  If a gene in one cell is altered it is passed on to every cell that develops.  2 types  Gene mutations-produce a change in a singe gene  Chromosomal mutations-produce changes in a whole chromosome
  • 3. Gene Mutations  Point Mutations  Involve changes in one or a few nucleotides  Occur at a single point in the DNA sequence  Occur during replication  3 types  Substitution  Insertion  deletion
  • 4. Substitutions  One base is changed to a different base  Affect one amino acid  Sometimes have no affect at all
  • 5. Insertions and Deletions A base is inserted or removed from the DNA sequence  Bases are still read in groups of 3 but now those groupings shift in every codon that follows the mutation
  • 6. Insertions and Deletions  Also called “framshift mutations” because they shift the reading frame of the genetic mutation  Changes every amino acid after the point of mutuation  Can change a protein so much it alters its function
  • 7. Chromosomal Mutations  Involves changes in the number or structure of chromosome.  These mutations can change the location of genes on chromosomes and can even change the number of copies of some genes.  4 types: deletion, duplication, inversion, translocation
  • 8. Deletion  Loss of all or part of a chromosome
  • 9. Duplication  Produces an extra copy of all or part of a chromosome
  • 10. Inversion  Reverses the direction of parts of a chromosome
  • 11. Translocation  Partof one chromosome breaks off and attaches to another
  • 12. Effects of Mutations  Genetic material can be altered by natural events or by artificial means.  The resulting mutations may or may not affect an organism.  Some mutations that affect individual organisms can also affect a species or even an entire ecosystem.
  • 13. Mutagens  Some mutations arise from mutagens, chemical or physical agents in the environment.  Chemical Mutagens Examples: pesticides, tobacco, smoke,environmental pollutants  Physical:x-rays, ultraviolet light,electromagnetic radiation  If the mutagen interacts with DNA they can produce mutations at high rates.
  • 14. Harmful and Helpful  Whether a mutation is negative or beneficial depends on how its DNA changes relative to the organism’s situation.
  • 15. Harmful Helpful  Some cancers  new or altered  genetic disorders. functions  Sickle cell disease  polyploidy.  Point mutation  An extra set of chromosomes  Larger and stronger than diploid plants
  • 16. Prokaryotic Gene Regulation  Prokaryotes produce only those genes needed to function by doing this prokaryotes can respond to changes in their environment  DNA-binding proteins in prokaryotes regulate genes by controlling transcription.
  • 17. Prokaryotic Gene Regulation  DNA-binding proteins in prokaryotes regulate genes by controlling transcription.  The genes in bacteria are organized into operons.  An operon is a group of genes that are regulated together.
  • 18. Lac Operon  Lactose is made of Glucose and Galactose  A cell must bring lactose across its membrane then break the bond  Performed by a protein called the lac operon  If lactose is the only food source it must make proteins to break these bonds  If on another food source it has no need for these proteins
  • 19. Promoters and Operators  The operon has 3 genes  On one side of these genes there are 2 regulatory genes  Promoter- RNA polymerase binds here to begin transcription  Operator-DNA lac opressor (blocker) can bind here to stop production
  • 20. Turning Off  When lactose is not present the lac repressor binds to the O region blocking transciption  This switches the operon “off”
  • 21. Turning On  Lac repressor has a place for lactose to bind  When lactose is present it bonds to this site and makes the repressor fall off  RNA polymerase can now bind to the promoter and begin transcription  If lactose is present it is automatically turned “on”
  • 22. Eukaryotic Gene Regulation  TATA Box  Found just before a gene  Marks the point just before a gene begins to help guide RNA polymerase into the right position
  • 23. Transcription Factors  Transcription factors regulate gene expression at the transcription level  Can control the expression of genes  Examples:  enhance transcription by opening up tightly packed chromatin  attract RNA polymerase  block access to certain genes  Multiple factors must bind before RNA polymerase can attach to the promoter
  • 24. Cell Specialization & RNA Interference  Complex gene regulation in eukaryotes is what makes specialization possible.  Small RNA molecules that do not belong to any major group ( mRNA,tRNA,rRNA) are found in the cell.  These RNA molecules interfere with mRNA and control gene expression
  • 25. RNA Interference  Blocking gene expression by means of an miRNA silencing complex is known as RNA interference  the small interfering RNA molecules fold into double-stranded hairpin loops  the “Dicer” enzyme cuts loops into microRNA  miRNA pieces attaches to a cluster of proteins called the silencing complex  This destroys any mRNA containing a sequence that is complementary to the miRNA
  • 27. Genetic Development  differentsets of genes are regulated by transcription factors and repressors.  Gene regulation helps cells undergo differentiation, becoming specialized in structure and function.  Homeotic genes, regulates organs that develop in specific parts of the body.  Lewis grew a fly with a leg in place of an antennae!
  • 28. Homeobox  Homeobox genes code for transcription factors that activate other genes that are important in cell development and differenetiation  Code for legs and wings in fruit flies
  • 29. Hox Genes  Homeobox genes known as Hox genes determine the body plan of an embryo  They are arranged in the order in which they are expressed  Anterior to posterior  A mutation in these genes can change the order of the body or what parts develop
  • 30. Environmental Influences  Temperature,salinity,and nutrient availibility can influence gene expression  Lac operon in e.coli  Alligator Eggs  Metamorphosis
  • 31. Genome  Fullset of genetic information that an organism carries in its DNA.  Shows us what makes us uniquely human
  • 32. Karyotype  Shows the complete diploid set of chromosomes grouped together in pairs, arranged in order of decreasing size.
  • 33. Karyotype  Biologists photograph the cells during mitosis so the chromosomes are condensed and easy to view  Scientists then cut out the chromosomes and arrange them
  • 34. Chromosomes  Humans have 46 chromosomes grouped together in 23 pairs  44 of the chromosomes are autosomal chromosomes (autosomes)  2 of the 46 chromosomes are sex chromosomes  Females have 2 x chromosomes  Males have 2 y chromosomes
  • 35. Interesting…..  The human Y chromosome is much smaller than the X chromosome and contains only about 140 genes, most of which are associated with male sex determination and sperm development  More than 1200 genes are found on the X chromosome, some of which are shown.
  • 36. Chromosomes A sex linked gene is a gene located on a sex chromosome  Genes on the y chromosome are found only in males and are passed directly from father to son  Genes on the x chromosome are found in both sexes but tend to occur more often in males
  • 37.
  • 38. Color Blindness  Humans have 3 genes for colorblindness all on the x chromosome  A defective allele for any of these genes results in color blindness for males about 1 in 12 males  In order for this to be expressed in females they need an effective allele on both of their x chromosomes about 1 in 200
  • 39. If one X chromosome is enough, how do females cope with having 2?  Mostof the genes in 1 x chromosome are turned off  This forms a dense area in the nucleus called a Barr Body X inactivation happens in other mammals as well
  • 40. Spotted Cats!  In cats a gene that codes for the color of spot is located on the X chromosome.  One x may have an allele for orange spots, and one x may have an allele for black spots  In cells in some parts of the body, one X chromosome is switched off. In other parts of the body, the other X chromosome is switched off. As a result, the cat’s fur has a mixture of orange and black spots.
  • 41. Pedigree  Analyzes the pattern of inheritance followed by a particular trait  Shows the relationship within a family  Based on a pedigree, you can often determine if an allele for a trait is dominant or recessive, autosomal or sex-linked.
  • 42.  This pedigree shows the inheritence of the white forelock trait which is dominant  Grandfather has the trait  2 of his 3 children have the trait  3 of the 5 grandchildren have the trait  Since every child does not have the trait Grandfather must be heterozygous  The children and grandchildren without the trait are homozygous recessive
  • 43. Genetic Disorders  The molecules present affect the traits we display/have  The genotype correlates to the phenotype  Genetic Disorders are molecular  DNA is altered, changing the sequence of amino acids, this changes the proteins produced, and directly affects the phenotype
  • 44. Sickle Cell Anemia  Defective allele for beta globin  This forces cells into a distinct, rigid, sickle shape  The cells get stuck in capillaries and can damage tissues and organs
  • 45. Cystic Fibrosis  Results from the deletion of just 3 bases  Phenylalanine is missing from proteins,  Phen. Normally lets Cl pass through membranes  Without Cl the body’s tissues malfunction  Produces digestive problems,thick heavy mucus, labored breathing
  • 46. Cystic Fibrosis  Recessive Trait  Meaning you need to be homozygous recessive to have CF
  • 47. Huntington’s Disease  Caused by a dominant allele for a protein found in brain cells  Causes a long string of the codon CAG  Symptoms  Mental deterioration  uncontrollable movements  Does not present until middle age  The longer the string of CAG the earlier it appears