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Dr, lJ, Satyanarayana
M.Sc,.Ph.D.,F.l.C.,F.A.C.B.
Professor of Biochemistry
Siddhartha Medical Colle g e
(NTR University o...
Eiochemistrg
First Published : March 1999
Reprinted: 1999
RevisedReprint: August 2000
Reprinted: 2OQO,2001, 2QO2
Second Re...
Prefaceto the Third Edition
Theresponseto the first andthe secondeditionsof my book'Biochemistry'(reprintedseveraltimesin
...
I owea deepdebtof gratitudeto my parents,the lateSri U.VenkataSubbaiah,andSmt. Vajramma,for
cultivatingin me the habitof e...
Biochemistry
The term Biochemistrywas introducedby Carl Neubergin 1903.Biochemistrybroadlydealswith the
chemistrvof life a...
Gontents
SECTION ONE
ChemicalConstituentsof Life
1 > Biomoleculesandthecell
2 > Carbohydrates
3 > Lioids
4 > Proteinsandam...
fi Protuinsand Amino acids 4:
Nucleicacidsand Nucleotides 69
BflomnoXeeutrssaildthsCelll
-l- hu living matter is composedof mainly six
I elements-carbon, hydrogen, oxygenl
nitrogen, p...
BIOCHEMISTFIY
Biomolecule Buildingblock
(repeatingunit)
Major functions
1. Protein Aminoacids
2. Deoxyribonucleicacid(DNA)...
Chapter 1 : BIOMOLECULESAND THE CELL
Characteristic Prokaryotic cell Eukaryoticcell
1. Size Small(generally1-10pm) Large(g...
BIOCHEMISTF|Y
Nucleus contains DNA, the repository of
genetic information. Eukaryotic DNA is
associatedwith basic protein ...
Chapter 1 : BIOMOLECULESAND THE CELL
which, in turn, constituteColgi apparatus(or
Colgi complex).The newly synthesizedprot...
E}IOCHEMISTF|Y
peroxisomes, which are involved in the
glyoxylate pathway.
Peroxisome biogenesisdisorders (PBDs), are
a Bro...
1^ arbohydratesare the most abundantorganic
- molecules in nature. They are primarily
composedof the elementscarbon, hydro...
t0 BIOCHEMISTRY
Monosaccharides(empiricalformula) AIdose Ketose
Trioses(CgHoOg)
Telroses(C+HoO+)
Pentoses(CsHroOs)
Hexoses...
Ghapter 2 : CARBOHYDRATES 11
Trioses
Glyceraldehyde
Dihydroxyacetone
Tetroses
D-Erythrose
Foundincellsasphosphate
Foundinc...
12 E}IOCHEMISTFIY
H-C:O
I
H-C-OH
cH2oH
D-Glyceraldehyde
H-C:O
HO-C-H
cH2oH
L-Glyceraldehyde
H-C:O
I
HO-C-H
H-C-OH
I
HO-C-H...
Ghapter 2 : CABBOHYDFATES 13
Aldotriose
(3c)
Aldotetroses
(4c)
cHo
I
HOCH
I Aldo toses
HOCH )
I
HCOH
I
cH2oH
D-Lyxoee
cHo
...
14 E}IOCHEMISTRY
?H2oH
C:O
I
cH2oH
Dlhydroxyacetone
cH2oH
I
C:O
I
HOCH
HCOH
I
cH2oH
D-Xylulose
cH20H
I
C:O
HCOH
HCOH
I
cH2...
t5
Ghapter 2 : CARB
I
cH20H
o'D'Glucose
(+ 112.2"
fil
H6?H
o-D-GlucoPYranose
1
H-C:O
I
H-C-OH
I
HO-C-H
I
H-C-OH
tc
H-C-OH
...
chapter 2 : CAFIBoHYDFATES 15
I
cH2oH
cr-D-Glucose
(+ 112.2")
1
H-C=C)
I
H-C-OH
I
HO-C-H
I
H-C-OH
l5
H-C-OH
cH2oH
D-Glucos...
16 BIOCHEMISTFIY
H
n-C-ot
H-C:O (
I
H- -OH HO-(
HO-(
R
Enediol
(common)
Fig.2.8 : Formationof a commonenediolfrom
glucose,...
Ghapter 2 : CAFIBOHYDRATES 17
H-C--O
I
H-C-OH
I
HO-C-H
I
H-C-OH
I
H-C-OH
I
cH2oH
D-Glucose
H-C:O
I
H-C:O
I
cH20H
Hydroryme...
t8 BIOCHEMISTRY
Naming of glycosidic bond : The
nomenclatureof glycosidic bonds is based on
the Iinkagesbetweenthe carbon ...
Ghapter & : CAFIBOHYDRATES 19
H-C:O
I
H-C-OH
I
HO-C-H
I
H-C-OH
I
H-C-OH
I
COOH
D-Glucuronicacid
OHH
D-2-Deoxyribose
cH2oH
...
BIOCHEMISTF|Y
HOH
Glucose Fructose
Sucrose
(a-D-glucosyl(1 --+2)p-D-fructose)
Galactose
Lactose
(p-D-galactosyl(1 -+ a)p-D...
ChapteF 2 : CARBOHYDFATES 21
D-Glucose D-Glucose
Amylopectin
o-Amylose
+- (1-* 6) Branch
MainchainLg
6nu
vt t2
thousandglu...
22 BIOCHEMISTRY
Fiq.2.14: Structureofglycogen(A)Generalstructure
(B)Enlargedat a branchpoint.
Cellulose
Celluloseoccursexc...
CARBOHYDRATES 23
Fig. 2.16 : Diagrammaticrepresentationof a
prateoglycan complex.
Mucopolysaccharidesareessentialcomponent...
24 BIOCHEMISTFIY
Hyaluronic acid is composed of alternate
units of D-glucuronic acid and N-acetyl
D-glucosamine.These two ...
Ghapter 2 : CAFIBOHYDHATES 25
Glycosaminoglycan Composition Tissuedistribution Function(s)
Hyaluronicacid D-Glucuronicacid...
26 ElIOCHEMISTF|Y
blood would {reeze.lt is now known that ihese
fish contain antifreezeglycogtrateinwhich lower
the freezi...
Ghapter 2 : CAFIBOHYDHATES
I. Essayquestions
1. Define and classifycarbohydrateswith suitableexamples.Add a note on the fu...
Lirpirdls
fl ?"'-o-
i
R--c-o1H
frCH2-H R3
The Jat speaks :
"ffith uater, I say, 'Touch menot':
T'otlte tongue,I am tastefu...
Chapter 3 : LIPIDS 29
(i) Glycerophospholipids: Thesephospho-
lipids containglycerolas the alcohol
e.9.,lecithin,cephalin....
30 BIOCHEMISTF|Y
(e.9., octadecanoic acid). In addition to
systematicnames/ fatty acids have common
nameswhich are more wi...
Ghapten 3 : LIPIDS 31
double bonds, startingfrom the carboxyl end.
Thus,saturatedfattyacid, palmiticacid iswritten
as.l 6:...
32 BIOCHEMISTFIY
U
A CH2-O-C Fl,
ltl
R2-C-O-CH O
ttl
cH2-o-c-R3
Triacylglycerol
o
cH2-o-c -B
t-
HO_CH
I
cH20H
1-Monoacylgl...
C*rapter'3: LIPIDS 33
It should be noted that C1 and C3 are
different. Cells possess enzymes that can
distinguish these tw...
34 ElIOCHEMISTRY
Reichert-Meissl(RM) number: lt is definedas
the number of ml 0.1 N KOH required to
completelyneutralizeth...
Chapter 3 : LIPIDS 35
oll
g cH2-o-c-R1
ill
RI-C-O-CH .:1
-l
CH2-i-'-r'- i't
(1)Phosphatldicacid
,11
ill
i tz)Leclthln(phos...
36 BIOCHEMISTF|Y
(a) Dipalmitoyl lecithin is an important
phosphatidylcholinefoundin lungs,lt isa
surface active agent and...
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Biochemistry satyanarayana_chakrapani

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Biochemistry satyanarayana_chakrapani

  1. 1. Dr, lJ, Satyanarayana M.Sc,.Ph.D.,F.l.C.,F.A.C.B. Professor of Biochemistry Siddhartha Medical Colle g e (NTR University of Health Sciences) Vijayawada, 4.P., India Dr, lJ, Chakrapani M.B.B,S.,M.S. BCDCDT(SAn|D ALLTED lPf Ltd. No.1-E(1) "SHUBHAMPLAzA" (lst Floor) 83/I, BBLrRcrnrn MarN Roeo, Korrere 700010 (Ixora) k:i : (+9| -33)6535-3844,2241-8573 oFax : (033)2358-2127 e-mail : books@cal.vsnl.net.in
  2. 2. Eiochemistrg First Published : March 1999 Reprinted: 1999 RevisedReprint: August 2000 Reprinted: 2OQO,2001, 2QO2 Second Revised Edition : June 2002 Reprinted: 2003 RevisedReprint: 2004 RevisedReprint: 2005 Third Revised Edition (multicolour) : 2006 Revised Reprint : 2007 @Copyright reserued by Dn U. Satyanarayana. Publishing rights and Printing rights reserved by the Publisher. Marketing rights, Distributing rights & Selling rights reserued by the Publisher. All rights reserved. No part of this publication may be reproduced or transmifted in any form or by any means, electronic, mechanical, photo-copying, recording or any informatign storage and retrieval system, without the prior wiitten permission of the Publisher. Exclusive rights reserued by the Publisher for publishing, printing, sale, marketing, distribution, expoft and translation of this book for all editions and reprints thereof. Cover Design Depicts the universal energy currency of the living world-ATP, predominantly synthesized by the mitochondria ol the cell (the functional unit of life), in comparison with the intemational currencies--$, t, €, Rs, Y. Publisher Typesetter Printer ArunabhaSen BOOKS AND ALLIED (P) Lro. 8/1 ChintamoniDas Lane, Kolkata700009 BOOKS AND ALLIED (P) Lro. 8/1 ChintamoniDas Lane, Kolkata700009 SWAPNA PRINTINGWORKS (P) Lro. 52 Raja RammohanRoy Sarani,Kolkata700009 ShyamalBhattacharyaProject Supervisor : tsBN Bt-8?!1q-80-t Price: Rs.575.00lRupeesFivehundredandSeventy{ive)only US$12.00only AuthorsSponsored& Supportedby : UIBFALAAUTFIOR-PUBTISHERINTERTINKS D.No.: 48-16-10,NagarjunaNagar,MahanaduRoad,Vrjayawada-520008(A"Pl
  3. 3. Prefaceto the Third Edition Theresponseto the first andthe secondeditionsof my book'Biochemistry'(reprintedseveraltimesin just 6 years)from the studentsandteachersis simplyoverwhelming.I wasfloodedwith highlyappreciative lettersfrom all cornersof Indiaandabroad!Thisgivesme immensesatisfactionandencouragemLntin this academicventure. I havecorrespondedwith manybiochernistryteachers,invitingtheir commentsandopinionsfor further improvingthe book.Mostof them havebeenkind enoughto offerconstructivesuggestions.I alsovisited severalcollegesandhadpersonalinteractionwith facultymembersandstudents.Theseexercises,spreadover the past 6 years,have helpedme to get direct feedbackon my book, besidesrealisingthe additional requirementsof students. I havegreatpleasurein presentingthe third editionof my bookwith severalunique/novelfeatures,some high-lightsof which are listedbelow. . A thoroughrevisionandupdatingof eachchapterwith latestadvances- . Multicolouredillustrationsfor a betterunderstandingof chemicalstructuresandbiochemicalreactions. . Increasein the font sizeof the text for morepleasantandcomfortablereading. o Incorporationof a newSectionon MolecularBiologyandBiotechnology. . Additionof ten new chapters-humangenomeproject,genetherapy,bioinformatics,free radicalsand antioxidants,tissueproteinsandbodyfluids,environmentalbiochemistry,genetics,immunologyetc. . An improvedorientationand treatmentof humanbiochemistryin healthanddisease. . Additionof practicalbiochemistryandclinicalbiochemistrylaboratoryin the appendix. It is true that I representa selectedgroupof individualsauthoringbooks,havingsometime at disposal, besideshardwork,determinationanddedication.I considermyselfan eternallearneranda regularstudent of biochemistry.However,it is beyondmy capabilityto keeptrackof theevergrowingadvancesin biochemistry dueto the exponentialSrowthof the subject.And this makesme nervous,wheneverI think of revisingthe book.I honestlyadmitthat I haveto dependon maturereadersfor subsequenteditionsof this book. AN INVITATION TO READERS It is not all the time possiblefor me to meetthe readersindividuallyandgettheir feedback,despitemy ferventwish.Of course,I dowrite to somepeoplepersonaliyseekingtheir opinions.However,I wishto have the commentsandsuggestionsof eachoneof the readersof my book.I sincerelyinvitethe readersto feelfree andwrite to me expressingtheir frank opinions,criticalcommentsandconstructivesuggestions. DT.U. SATYANARAYANA trl
  4. 4. I owea deepdebtof gratitudeto my parents,the lateSri U.VenkataSubbaiah,andSmt. Vajramma,for cultivatingin me the habitof earlyrising.Thewriting of this bookwouldneverhavebeenpossiblewithout this healthyhabit.I am gratefulto Dr. B. S.NarasingaRao(formerDirector,NationalInstituteof Nutrition, Hyderabad)for discipliningmy professionallife, andto my eldestbrother Dr. U. Gudaru(formerProfessorof PowerSystems,WalchandCollegeof Engineering,Sangli)for discipliningmy personallife. My elder son, U. Chakrapani(MBBS)deservesa specialplacein this book. He madea significant contributionat everystageof its preparation-writing, verification,proof-readingandwhat not. I hadthe rare privilegeof teachingmy sonashehappenedto bea studentof our college.Anda majorpartof this bookwas writtenwhilehewaslearningbiochemistry.Thus,hewasthe firstpersonto learnthesubjectof biochemistry from my handwrittenmanuscript.Thestudent-teacherrelation(ratherthan the father-son)hashelpedme in receivinSlconstantfeedbackfrom him and restructurethe book in a way an undergraduatestudentwould expecta biochemistrytextbookto be. Next,I thankDr. G.PitcheswaraRao(formerProfessorof Anatomy,SMC,Vijayawada)for his constructive criticism and advice,and Dr. B. Sivakumar(Director,NationalInstituteof Nutrition, Hyderabad)for his helpful sugi5lestionson the microfigures.I am gratefulto my nephew,Mr. U. SrinivasaRao,for helping me in drawingsomefigures. Last but not least,I thank my wife Krishna Kumari and my youngerson,Amrutpani,without whose cooperationand encouragementthis book could never have beenwritten. The manuscriptwas carefully nurturedlike a newborn babyandthe bookhasnow becomea full-pledgedmemberof our family. ACKNOWLEDGEMENTSTO THE THIRD EDITION I amindebtedto a largenumberof friends,pen-friendsandstudentswhohelpedmeto reviseandimprove the qualityof this book.I haveindividuallyandpersonallythankedall of them (whonumbera fewhundreds!). I onceagainexpressmy gratitudeto them. I thank my friend and colleague,Mr. M.S.T.JaganMohan,who has helpedme with his frequent interactionsto improvethe book,andmakeit morestudent-friendly.I wouldlike to placeon recordmy deep senseof appreciationto my post-graduate(M.D.)students,Dr. (Mrs.)U.B.VijayaLakshmiandDr. (Mrs.)Vidya DesaiSripad,whoseperiodicalacademicinteractionandfeedbackhavecontributedto the improvementof the biomedicaVclinicalaspectsin somechapters.I acknowledgethe helpof my friend,Dr. P.Ramanujam(Reader in English,AndhraLoyolaCollege,Vijayawada)for his helpandencouragementin revisingthe book. I expressmy gratitudeto Mr. ArunabhaSen, Director,Books & Allied (P) Ltd. Kolkata,for his wholeheartedsupportand constantencouragementin revisingthe bookin multicolour,and takingall the painsto bring it out to my satisfaction.I thank Mr. ShyamalBhattacharyafor his excellentpage-makingand graphics-workin the book.I am indebtedto Mr. PrasenjitHalderfor the coverdesignof this book. I thank my wife, Krishna Kumari, and my younger son, Amrutpani, for their constantsupport and encouragement.I am grateful to UppalaAuthor-PublisherInterlinks, Vijayawada,for sponsoringand supportingme to bring out this edition. Iiii] DT.U. SAIYANARAYANA
  5. 5. Biochemistry The term Biochemistrywas introducedby Carl Neubergin 1903.Biochemistrybroadlydealswith the chemistrvof life and living processes.Thereis no exaggerationin the statement,'Thescopeof biochemistrg is asuastaslilb itself!' Everyaspectof life-birth,growth,reproduction,aginganddeath,involvesbiochemistry. For that matter,everymovementof life is packedwith hundredsof biochemicalreactions.Biochemistryis the mostrapidlydevelopingandmostinnovativesubjectin medicine.Thisbecomesevidentfromthe factthat over the years,the major shareof NobelPrizesearmarkedfor Medicineand Physiologyhasgoneto researchers engagedir: biochemistry. The disciplineof biochemistryservesas a torch light to trace the intricate complexicitiesof biology, besidesunravellingthe chemicalmysteriesof life.Biochemicalresearchhasamplydemonstratedthat all living thingsarecloselyrelatedat the molecularlevel.Thusbiochemistryis the subjectof unity in the diversified living kingdom. Advancesin biochemistryhavetremendousimpacton humanwelfare,andhavelargelybenefitedmankind and their living styles.Theseincludethe applicationof biochernistryin the laboratoryfor the diagnosisof diseases.the products(insulin,interferon,€rowthhormoneetc.)obtainedfrom geneticengiineering,andthe possibleuseof genetherapyin the nearfuture. 0rganizationof the Book This texthook,comprising43 chapters,is orgianizedinto serrensecl:ionsin the heirarchicalorder of learninSbiochemistry. . SectionI dealswith the chemicalconstituentsof life-carbohydrates,lipids,proteinsandaminoacids, nucleicacidsandenzymes. . SectionII physiologicalchemistryincludesdigestionandahsorption,plasmaproteins,hemoglobinand prophyrins,andbiologicaloxidation. . SectionIII incorporatesall the metabolisms(carbohydrates,lipids,aminoacids,nucleotides,minerals) . Section[V covershormones,organfunctiontests,water,electrolyteandacid-basebalance,tissueproteins andtrodi'fluids,andnutrition. . SectionV is exclusivelydevotedto molecularbiologyandbiotechnology(DNA-replication,recombination, ar"lnrepair,transcriptionandtranslation,regulationof geneexpression,recombinantDNAandbiotechnology) . SectionVI givesrelevantinformation on current topics such a^shuman genomeproject,genetherapy, bioirrtormatics,prostaglandins,diabetes,cancer,AIDSetc. . Section VII dealswith the basic aspectsfor learning and understandingbiochemistry (bioorganic chenristry',hiophysicalchemistrytoolsof biochemistry,genetics,immunology). Each chapterin this book is carefully craftedwith colour illustrations, headingsand subheadingsto facilitatequickunderstanding.Theimportantapplicationsof biochemistryto humanhealthanddiseaseareput togetherasbiomedical/clinicalconcepts.Iconsare usedat appropriateplacesto serveas 'landmarks'. The origins of biochemicalwords, confusablesin biochemistry,practicalbiochemistryand clinical biochemistrylaboratory,givenin the appendixare novelfeatures. Thebriokis so organizedasto equipthe readerswith a comprehensiveknowledgeof biochemistry. Iiu]
  6. 6. Gontents SECTION ONE ChemicalConstituentsof Life 1 > Biomoleculesandthecell 2 > Carbohydrates 3 > Lioids 4 > Proteinsandaminoacids 5 > Nucleicacidsandnucleotides 6 > Enzymes 7 > Vitamins SECTION TWO PhysiologicalBiochemistry B > Digestionandabsorption 9 > Plasmaoroteins 10 > Hemoglobinandporphyrins 11 > Biologicaloxidation SECTION THBEE q3 > Metabolismofcarbohydrates *4 > Metabolismoflioids F-, Metabolismofaminoacids 16 > Int6grationofmetabolism 17 > Metabolismofnucleotides 1B > Mineralmetabolism SECTION FOUR ClinicalBiochemistrvand Nutrition 19 > Hormones 20 > Organfunctiontests 21 > Water,electrolyteand acid-basebqlance 22 > Tissueproteinsandbodyfluids 23 > Nutrition- SECTION FIVE MolecularBiologyand Biotechnology 24 > DNA-replication,recombinationandrepair523 25 > Transcriotionandtranslation 542 26 > Regulationofgeneexpression 566 27 b RecombinantDNAandbiotechnology578 sEcTtcN stx Current Topics 28 > Humangenomeproject 619 29 > Genetherapy 625 30 F Bioinformatics 634 31 p 'lvletabolismofxenobiotics(detoxification)638 32 >' Prostaglandinsandrelatedcompounds644 33 > Biologicalmembranesandtransport 650 34 b Freeradicalsandantioxidants 655 35 > Environmentalbiochemistry 662 36 l" Insulin,glucosehomeostasis, 3 9 28 43 69 85 176 165 182 196 221 anddiabetesmellitus Cancer 669 58s37> 38> Acquiredimmunodeficiency syndrome(AIDS) 695 241 244 285 330. 380 387 403 427 453 SECTION SEVEN Basicsto LearnBiochemistrv 39 > Introductiontobioorganicchemistry 40 > Overviewofbiophysicalchemistry 41 > Toolsofbiochemistrv 42 > lmmunology 43 > Genetics APPENDICES AnswerstoSelf-assessmenlExercises I Abbreviationsusedinthisbook' ll Greekalphabets lll Originsolimportantbiochemicalwords lV Commonconfusablesinbiochemistry V Practicalbiochemistry-principles Vl Clinicalbiochemistrylaboratory INEEX 703 708 719 732 737 745 751 756 tJt 760 764 770 773 468 487 502
  7. 7. fi Protuinsand Amino acids 4: Nucleicacidsand Nucleotides 69
  8. 8. BflomnoXeeutrssaildthsCelll -l- hu living matter is composedof mainly six I elements-carbon, hydrogen, oxygenl nitrogen, phosphorus and sulfur. Theseelements togetherconstituteabout 90% of the dry weight of the human body. Severalother functionally importantelementsare also found in the cells. Theseinclude Ca, K, Na, Cl, Mg, Fe,Cu, Co, l, Zn, F, Mo and Se. earbon-a unique element of life Carbonis the most predominantand versatile elementof life. lt possessesa unique propertyto form infinite number of compounds. This is attributedto the ability of carbon to form stable covalentbonds and C-C chains of unlimited length. lt is estimated that about 90% of compounds found in living system invariably contain carbon. Ghemical molecules of li#e Life is composed of lifeless chemical molecules. A single cell of the bacterium, Escherichiacoli containsabout 6.000 different organiccompounds.lt is believedthat man may contain about 100,000 different types of moleculesalthough only a few of them have been characterized. Sornpiex *riomoleeules The organiccompoundssuchasamino acids, nucleotidesand monosaccharidesserve as the monomeric unitsor building blocksof complex biomolecules-proteins,nucleicacids(DNA and RNA) and polysaccharides,respectively.The important biomolecules(macromolecules)with their respective building blocks and major functions are given in Table 1.1. As regards lipids, it may be noted that they are not biopolymers in a strict sense,but majority of them contain fatty acids. Structural heirarehy off asn organisnl The macromolecules(proteins,Iipids,nucleic acidsand polysaccharides)form supramolecular assemblies(e.g. membranes)which in turn organize into organelles,cells, tissues,organs and finally the whole organism. 3
  9. 9. BIOCHEMISTFIY Biomolecule Buildingblock (repeatingunit) Major functions 1. Protein Aminoacids 2. Deoxyribonucleicacid(DNA) Deoxyribonucleotides Ribonucleotides3. Ribonucleicacid(RNA) 4. Polysaccharide(glycogen)Monosaccharides(glucose) Fundamentalbasisofstructureand functionofcell(staticanddynamicfunctions). fl_eq_o_sitoryo.l.!9199iFryi{9l1llgt Essentiallyrequiredlorproteinbiosynthesis. Storageformofenergytomeetshortterm demands. 5. Lipid Fattyacids,glycerol Storagetormofenergytomeetlongterm demands;structuralcomponentsofmembranes. Chem*ca! composition of man The chemicalcompositionof a normal man, weighing 65 kg, is given in Table 1.2.Water is the solventof life and contributesto more than 60"h of the weight. This is followed by protein (mostlyin muscle)and lipid (mostlyin adipose tissue).The carbohydratecontent is rather low which is in the form of glycogen. The cell is the structuraland functional unit of life. ft may be also regardedas the basic unit of hiological activity. The concept of cell originated from the contributionsof Schleidenand Schwann(1838). However, it was only after 1940, the complexitiesof cell structurewere exposed. Constituent Percent(7") Weight (kg) Prokaryotic and eukaryotic cells The cells of the living kingdom may be divided into two categories 1. Prokaryotes(Creek: pro - before;karyon- nucleus)lacka well definednucleusand possess relatively simple structure.These include the variousbacteria. 2. Eukaryotes(Greek: eu-true; karyon- nucleus)possessa well definednucleusand are more complex in their structureand function. The higher organisms(animalsand plants)are composedof eukaryoticcells. A comparisonof the characteristicsbetween prokaryotesand eukaryotesis listedin Table 1.3. The human body is composedof about 1014 cells.There are about 250 typesof specialized cel{s in- the human body'G.g. erythrocytes, nerve-cells, muscle cells, B cells of pancreas. An eukaryoticcell is generally10 to 100 pm in diameter. A diagrammatic representation of a typical rat liver cell is depicted in Fig.I.t. The plant cell differsfrom an animalcell by possessinga rigid cell wall (mostlycomposedof cellulose)and chloroplasts.The latter are the sitesof photosynthesis. Water Protein Lipid Carbohydrate Minerals 61.6 17.0 13.8 6.1 40 11 I '| 4
  10. 10. Chapter 1 : BIOMOLECULESAND THE CELL Characteristic Prokaryotic cell Eukaryoticcell 1. Size Small(generally1-10pm) Large(generally10-100pm) 2. Cellmembrane Cellisenvelopedbyaflexibleplasmamembrane Distinctorganellesarefound (e.9.mitochondria,nucleus,lysosomes) 3. Sub-cellular organelles 4, Nucleus Notwelldefined;DNAisfound asnucleoid,histonesareabsent Nucleusiswelldefined,surroundedbya membrane:DNAisassociatedwithhistones 5. Energymetabolism Mitochondriaabsent,enzymesof energymetabolismboundto Enzymesolenergymetabolismarelocated inmitochondria membrane 6. Celldivision 7. Cytoplasm Usuallyfissionandnomitosis Mitosis 0rganellesandcytoskeleton absent Containsorganellesandcytoskeleton (anetworkoftubulesandfilaments) The cell consistsof well definedsubcellular organelles,envelopedby a plasma membrane. By differential centrifugation of tissue homogenate, it is possible to isolate each cellular organelle in a relatively pure form (Refer Chapter 41). The distribution of major enzymes and metabolic pathways in different cellular organelles is given in the chapter on enzymes (Refer Fig.6.6). The subcellular organellesare briefly describedin the following pages. Nucleus Nucleus is the largest cellular organelle, surroundedbv a double membrane nuclear envelope.The outer membraneis continuous with the membranesof endoplasmicreticulum. At certainintervals,the two nuclearmembranes have nuclearporeswith a diameterof about 90 nm. Theseporespermit the free passageof the products synthesizedin the nucleus into the surrounding cytoplasm. Roughendoplasmicreticulum Golgiapparatus Lysosome Mitochondrion Plasmamembrane Vacuole Ribosomes Peroxisome Cytoskeleton Cytosol Coatedpits Ftg. 1.1: Diagrammaticrepresentationof a nt liverell.
  11. 11. BIOCHEMISTF|Y Nucleus contains DNA, the repository of genetic information. Eukaryotic DNA is associatedwith basic protein (histones)in the ratio of 1 : 1, to form nucleosomes.An assembly of nucleosomesconstituteschromatin fibres of chromosomes(Creek'.chroma - colour; soma- body). Thus, a single human chromosomeis comoosedof abouta million nucleosomes.The number of chromosomes is a characteristic feature of the species. Humans have 46 chromosomes,compactlypackedin the nucleus. The nucleusof the eukaryoticcell containsa dense bodv known as nucleolus.lt is rich in RNA, particularlythe ribosomal RNA which entersthe cytosolthrough nuclearpores. The ground materialof the nucleus is often referredto as nucleoplasm.lt is rich in enzymes such as DNA polymerases and RNA polymerases.To the surpriseof biochemists,the enzymes of glycolysis,citric acid cycle and hexose monophosphateshunt have also been detectedin the nucleoplasm. Mitochondria The mitochondria (Creek'. mitos- thread; chondros- granule) are the centres for the cellularrespirationand energymetabolism.They are regarded as the power housesof the cell with variablesize and shape.Mitochondriaare rod-like or filamentousbodies, usuallv with dimensions of 1.0 x 3 pm. About 2,0O0 mitochondria,occupyingabout 1/5thof the total cell volume,are presentin a typicalcell. The mitochondriaare comoosedof a double membrane system. The outer membrane is smooth and completelyenvelopsthe organelle. The inner membrane is folded to form cristae (Latin- crests)which occupy a larger surface area. The internal chamber of mitochondriais referred to as matrix or mitosol. The componentsof electron transportchain and oxidative phosphorylation (flavoprotein, cytochromesb, c1, C, a and a3 and coupling factors)are buried in the inner mitochondrial membrane.The matrixcontainsseveralenzvmes concerned with the energy metabolism of carbohydrates,lipidsandaminoacids(e.g.,citric acid cycle, p-oxidation).The matrix enzymes also parlicipate in the synthesisof heme and urea. Mitochondria are the principal producers of ATP in the aerobic cells. ATP, the energy currency,generatedin mitochondriais exported to all partsof the cell to provideenergyfor the cellularwork. The mitochondrialmatrixcontainsa circular double stranded DNA (mtDNA), RNA and ribosomes.Thus,the mitochondriaareequipped with an independent protein synthesizing machinery.It is estimatedthat about 10% of the mitochondrial oroteins are produced in the mitochondria. The structureand functionsof mitochondria closely resemble prokaryotic cells. lt is hypothesizedthat mitochondria have evolved from aerobicbacteria.Further,it is believedthat duringevolution,the aerobicbacteriadeveloped a symbiotic relationship with primordial anaerobiceukaryoticcellsthat ultimatelyled to the arrival of aerobiceukaryotes. Endoplasmic reticulum The network of membraneenclosedspaces that extends throughout the cytoplasm constitutesendoplasmicreticulum(ER).Someof these thread-like structuresextend from the nuclearporesto the plasmamembrane. A large portion of the ER is studded with ribosomesto give a granularappearancewhich is referred ro as rough endoplasmic reticulum. Ribosomes are the factories of protein biosynthesis. During the process of cell fractionation,roughERisdisruptedto form small vesiclesknown as microsomes.It may be noted that microsomesas such do not occur in the cell. The smoothendoplasmicreticulumdoes not containribosomes.lt is involvedin the synthesis of lipids (triacylglycerols,phospholipids,sterols) and metabolismof drugs,besidessupplyingCa'?. for the cellularfunctions. Golgi apparats,r$ Eukaryoticcells contain a unique clusterof membrane vesicles known as dictyosomes
  12. 12. Chapter 1 : BIOMOLECULESAND THE CELL which, in turn, constituteColgi apparatus(or Colgi complex).The newly synthesizedproteins are handed over to the Colgi apparatuswhich catalysethe addition of carbohydrates,lipids or sulfatemoietiesto the proteins.Thesechemical modificationsare necessaryfor the transportof proteinsacrossthe plasmamembrane. Certainproteinsand enzymesareenclosedin membrane vesicles of Colgi apparatusand secreted from the cell after the appropriate signals.The digestiveenzymesof pancreasare oroducedin this fashion. Colgi apparatusare also involved in the membrane synthesis, particularly for the formation of intracellular organelles (e.g. peroxisomes,lysosomes). Lysosornes Lysosomesare sphericalvesiclesenveloped by a singlemembrane.Lysosomesare regarded as the digestivetract of the cell, sincethey are actively involved in digestion of cellular substances-namely proteins, lipids, carbo- hydratesand nucleic acids.Lysosomalenzymes are categorizedas hydrolases.Theseinclude the following enzymes(with substratein brackets) a-C lucosidase(glycogen) Cathepsins(proteins) Lipases(lipids) Ribonucleases(RNA) The pH of the lysosomalmatrixis moreacidic (pH< 5) than the cytosol (pH-7) and this facilitatesthe degradationof differentcompounds. The lysosomal enzymes are responsiblefor maintaining the cellular compounds in a dynamic stafe, by their degradationand recycling.The degradedproductsleavethe lysosomes,usually by diffusion, for reutilization by the cell. Sometimes,however,certain residualproducts, rich in lipidsand proteins,collectivelyknown as Iipofuscinaccumulatein the cell. Lipofuscinis the agepigmentor wear and tearpigmentwhich has been implicatedin ageingprocess. The digestiveenzymesof cellularcompounds are confinedto the lvsosomesin the bestinterest of the cell. Escapeof theseenzymesinto cytosol will destroythe functionalmacromoleculesof tne cell and result in many complications.The occurrence of several diseases(e.g. arthritis, musclediseases,allergicdisorders)hasbeenpartly attributedto the releaseof lysosomalenzymes. Feroxisomes Peroxisomes,also known as microbodies, are single membranecellularorganelles.They are spherical or oval in shape and contain the enzyme catalase.Catalaseprotectsthe cell from the toxic effectsof HrO, by converting it to HrO and Or. Peroxisomesare also involved in tne oxidation of long chain fatty acids (> C,s),and synthesisof plasmalogensand glycolipids.Plants contain glyoxysomes, a specialized type of BTOMED|eAL/ CLINICAL COIUCEPTS A liuing cell is a true representotiueof life with its own organizotionand specialized lunctions. Accumulotion oJ lipofuscin,a pigment rich in lipids and proteins, in the cell hasbeen implicated in ogeing process. Leokageof lysosomalenzymesinto the cell degrodesseuerolfunctional macromolecules and this may leod to certain disorders (e.9. arthritis). rq Zellweger syndrome is a rare diseose characterized by the absence of functional peroxisomes.
  13. 13. E}IOCHEMISTF|Y peroxisomes, which are involved in the glyoxylate pathway. Peroxisome biogenesisdisorders (PBDs), are a Broup of rare diseasesinvolving the enzyme activities of peroxisomes. The biochemical abnormalitiesassociatedwith PBDs incluoe increasedlevelsof very long chain fatty acids (C2aand C26)and decreasedconcentrationsof plasmalogens.The most severeform of PBDsis Zellweger syndrome, a condition characterized by the absenceof functional peroxisomes.The victimsof this diseasemav die within one vear after birth. {iytosol and cytoskeleton The cellular matrix is collectively referredto as cytosol. Cytosol is basicallya compartment containing several enzymes/ metabolites and saltsin an aqueousgel like medium.More recent studies however, indicate that the cytoplasm actuallycontainsa complex network of protein filaments, spread throughout, that constitutes cytoskeleton.The cytoplasmicfilamentsare of three types- microtubules, actin filaments and intermediatefilaments.The filamentswhich are polymers of proteins are responsiblefor the structure,shapeand organizationof the cell. INTEGRATIOI{ OF CELLULAR FUNCTIONS The eukaryoticcells performa wide rangeof complex reactionsfunctionsto maintaintissues, and for the ultimatewell-beingof the whole organism. For this purpose, the various intracellularprocessesand biochemicalreactions are tightly controlledand integrated.Divisionof a cell intotwo daughtercellsis goodexampleof the orderlyoccurrenceof an integratedseriesof cellularreactions. Apoptosisis the programmedcell death or cell suicide. This occurs when the cell has fulfilled its biologicalfunctions.Apoptosismay be regardedas a natural cell deathand it differs from the cell death caused by injury due to radiation,anoxiaetc. Programmedcell death is a highly regulatedprocess. 1. 2. 3. Life is composed ol lifeless chemical molecules. The complex biomolecules, proteins, nucleic ocids (DNA and RNA), polysaccharidesand lipids are formed by the monomeric units amino acids,nucleotides,monosaccharidesand fotty acids,respectluely. The cell is the structuroland functional unit of life. The eukoryoticcell consisfsof well det'inedsubcellulororganelles,enuelopedin a plasma membrane. The nucleus contoinsDNA, the repositoryol genetic int'ormation.DNA, in association with proteins (histones),forms nucleosomeswhich,in turn, make up the chromosomes. The mitochondria qre the centresfor energymetobolism. Theyare the principalproducers of ATP which is exported to all parts of the cell to ptouide energylor cellular work. Endoplosmic reticulum (ER) ts the network of membrane enclosed spocesthat extends throughout the cytoplosm. ER studded with ribosomes, the factorles of protein biosynfhesis, ts relerred to as rough ER. Golgi opparatus sre a cluster of membrane uesiclesto uthich the newlg synthesizedproteins are handed ouer for t'urther processing ond export. Lysosomesare the digestiue bodiesol the cell, actiuely involued in the degradotion of cellular compounds. Peroxisomescontoln the enzymecatalosethat protects the cell lrom the toxic elfects of HrOr. The cellular ground motrix is referred to as cytosol which, in fact, is composed of a network ot' protein t'ilaments, the cytoskeleton. Theeukaryoticcellsperform a widerangeof complex lunctionsin a well coordinatedand integrated fashion. Apoptosis is the processol programmed cell death or cell suicide. 5. 6. 7.
  14. 14. 1^ arbohydratesare the most abundantorganic - molecules in nature. They are primarily composedof the elementscarbon, hydrogen and oxygen.The name carbohydrateliterallymeans 'hydratesof carbon'.Someof the carbohydrates possessthe empiricalformula (C.H2O)nwhere n 3 3, satisfyingthat thesecarbohydratesare in fact carbonhydrates.However,thereare several non-carbohydratecompounds(e.g. acetic acid, C2HaO2;lacticacid,C3H6O3)which alsoappear as hydratesof carbon. Further, some of the genuine carbohydrates (e.g. rhamnohexose, C6H12O5ideoxyribose,C5H16Oa)do not satisfy the generalformula.Hencecarbohydratescannot be alwaysconsideredas hydratesof carbon. Carbohydrates may be defined as polyhydroxyaldehydes or ketones or compounds which produce them on hydrolysis. The term 'sugar' is applied to carbohydratessoluble in water and sweet to taste. #-ur*c;tEerEsof earbohydrates Carbohydratesparticipatein a wide rangeof functions 1. Theyarethe mostabundantdietarysource of energy (a Cal/S)for all organisms. 2. Carbohydratesare precursorsfor many organic compounds(fats,amino acids). 3. Carbohydrates(asglycoproteinsand glyco- lipids) participate in the structure of cell membraneand cellular functionssuch as cell growth, adhesionand fertilization. 4. They are structuralcomponentsof many organisms.Theseincludethe fiber (cellulose)of plants,exoskeletonof some insectsand the cell wall of microorganisms. 5. Carbohydratesalso serve as the storage form of energy(glycogen)to meetthe immediate energydemandsof the body. CLASSIFICATION OF GARBOHYDRATES Carbohydrates are often referred to as saccharides (Greek: sakcharon-sugar).They are broadlyclassifiedinto three major groups- monosaccharides, oligosaccharides and polysaccharides.This categorizationis basedon
  15. 15. t0 BIOCHEMISTRY Monosaccharides(empiricalformula) AIdose Ketose Trioses(CgHoOg) Telroses(C+HoO+) Pentoses(CsHroOs) Hexoses(CoHrzOo) Heptoses(CzHr+Oz) Glyceraldehyde Erythrose Ribose Glucose Glucoheptose Dihydroxyacetone Erythrulose Ribulose Fructose Sedoheptulose the number of sugar units. Mono- and oligo- saccharidesare sweet to taste, crystalline in characterand soluble in water, hence thev are commonly known as sugars. FJtonosaccharides Monosaccharides(Greek: mono-one)are the simplestgroup of carbohydratesand are often referred to as simple sugars.They have the generalformula Cn(H20)n,and they cannot be further hydrolysed.The monosaccharidesare divided into differentcategories,based on the functionalgroupandthe numberof carbonatoms Aldoses : When the functional group in IH monosaccharidesis an aldehydel-C:oi, ,h"u are known as aldoses e.g. glyceraldehyde, glucose. Ketoses: When the functionalgroup is a keto lt -C:O.l group, they are referredto as ketoses e.g. dihydroxyacetone,fructose. Basedon the number of carbon atoms,the monosaccharidesare regarded as trioses (3C), tetroses (4C), pentoses (5C), hexoses (6C) and heptoses(7C).Thesetermsalongwith functional groupsare usedwhile namingmonosaccharides. For instance, glucose is an aldohexose while fructose is a ketohexose(Table 2,1). Thecommonmonosaccharidesand disaccha- rides of biological importanceare given in the Table 2.2. SSlgosaccharides Oligosaccharides(Creek: oligo-few) contain 2-1O monosaccharidemolecules which are liberatedon hydrolysis.Basedon the numberof monosaccharide units present, the oligo- saccharides are further subdivided to disaccharides,trisaccharidesetc. Polysace harides Polysacchari6ls(Creek:poly-many)are poly- mers of mondficcharide units with high mole- cular weight (up to a million).They are usually tasteless(non-sugars)and form colloids with water. The polysaccharidesare of two types- homopolysaccharidesand heteropolysaccharides. Stereoisomerismis an importantcharacterof monosaccharides. Stereoisomers are the compounds that have the same structural formulaebut differ in their spatialconfiguration. A carbon is said to be asymmetric when it is attached to four different atoms or groups. Ihe number of asymmetric carbon atoms (n) determines the possible isomers of a given compound which is equal to 2n. Clucose contains4 asymmetriccarbons,and thus has 16 tsomers. Glyeeraldehyde -tfu e ref erqlrt*e cff rb$hyd$'er'&€3 Clyceraldehyde(triose)is the simplestmono- saccharidewith one asymmetriccarbonatom. lt existsastwo stereoisomersand hasbeenchosen as the referencecarbohydrateio representthe structureof all other carbohvdrates.
  16. 16. Ghapter 2 : CARBOHYDRATES 11 Trioses Glyceraldehyde Dihydroxyacetone Tetroses D-Erythrose Foundincellsasphosphate Foundincellsasphosphate i Widespread I Widespreadasaconstituentof I RNAandnucleotides i AsaconstituentofDNA : Producedduringmetabolism i Asaconstituentofglycoproteins i anogums i ls anintermediateinuronicacidpathway i Heartmuscle i --. --. -- --.. ---.. -.. -. --. Asaconstituentolpolysaccharides (starch,glycogen,cellulose)and disaccharides(maltose,lactose, sucrose).Alsofoundinfruits Asaconstituentoflactose (milksugar) Foundinplantpolysaccharides andanimalglycoproteins Fruitsandhoney,asaconstituent ofsucroseandinulin Foundinolants i Glyceraldehyde3-phosphateisanintermediate i inglycolysis i ttst-pnosphateisanintermediateinglycolysis ----t------..-..-.--...--- ForthestructureofRNAandnucleotide coenzymes(ATP,NAD+,NADP+) ForthestructureolDNA Itisanimportantmetaboliteinhexose monophosphateshunt Involvedinthefunctionofglycoproteins Excretedinurineinessenlialpentosuria Asaconstituentollvxollavinofheartmuscle The'sugarfuel'oflife;excretedinurinein diabetes.Structuralunitofcelluloseinplants Convertedtoglucose,failureleadsto galactosemia Forthestructureofpolysaccharides Itsphosphatesareintermediatesofglycolysis Its7-phosphateisanintermediateinhexose monophosphateshunt,andinphotosynthesis Pentoses D-Ribose D-Deoxyribose D-Ribulose D-Xylose L-Xylulose D-Lyxose Hexoses D-Glucose D-Galactose D-Mannose D-Fructose Heptoses D-Sedoheptulose Disaccharides Occurrence Biochemical importance Sucrose Lactose Asaconstituentofcanesugarand beetsugar,pineapple Milksugar Productofstarchhydrolysis, occursingerminatingseeds Mostcommonlyusedtablesugarsupplying calories Exclusivecarbohydratesourcetobreastfed infants.Lactasedeficiency(lactoseintolerance) leadstodianheaandflatulence Animportantintermediateinlhedigestionof starch Maltose
  17. 17. 12 E}IOCHEMISTFIY H-C:O I H-C-OH cH2oH D-Glyceraldehyde H-C:O HO-C-H cH2oH L-Glyceraldehyde H-C:O I HO-C-H H-C-OH I HO-C-H HO-C-H cH2oH L-Glucose Fig.2.1 : DandL- formsof glucosecomparedwith D and L- glyceraldehydes (the reference carbohydrate). D" and L-isomers The D and L isomersare mirror imagesof each other. The spatialorientationof -H and -OH groups on the carbon atom (Cs for glucose)that is adjacentto the terminal primary alcohol carbon determineswhetherthe sugaris D- or L-isomer.lf the -OH group is on the right side,the sugaris of D-series,and if on the left side, it belongs to L-series.The structuresof D- and L-glucosebasedon the referencemono- saccharide, D- and L-glyceraldehyde (glycerose) are depicted in Fig.2.1. It may be noted that the naturallyoccurring monosaccharidesin the mammaliantissuesare mostlyof D-configuration.Theenzymemachinery of cells is specific to metaboliseD-seriesof monosaccharides. fn the medical practice, the term dextroseis used for glucosein solution. This is becauseof the dextrorotatorynature of glucose. Optlcal activity of sugars Optical activity is a characteristicfeature of compounds with asymmetric carbon atom. When a beam of polarized light is passed througha solutionof an optical isomer,it will be rotated either to the right or left. The term dextrorotatory (+) and levorotatory (-) are used to compoundsthat respectivelyrotatethe plane of polarizedlight to the right or to the left. An optical isomer may be designatedas D(+), D(-), L(+)and L(-) basedon its structural relation with glyceraldehyde.lt may be noted that the D- and L-configurationsof sugarsare primarily based on the structure of glyceraldehyde,the optical activitieshowever, may be different. Racemicmixture : lf D- and L-isomersare presentin equal concentration,it is known as racemicmixtureor DL mixture.Racemicmixture does not exhibit any optical activity, since the dextro- and levorotatorv activities cancel each other. Configuration of D-aldoses The configuration of possible D-aldoses startingfrom D-glyceraldehydeis depicted in Fig.2.2. This is a representation of Killiani- Fischersynthesis,by increasingthe chain length of an aldose,by one carbon at a time. Thus, startingwith an aldotriose(3C),aldotetroses(4C), aldopentoses(5C) and aldohexoses(6C) are formed. Of the 8 aldohexoses,glucose,mannose and galactoseare the most familiar. Among these, D-glucose is the only aldose mono- saccharidethat predominantlyoccurs in nature. Gonfiguration of D-ketoses Startingfrom dihydroxyacetone(triose),there are five keto-sugarswhich are physiologicallr important.Their structuresare given in Fig,2.3 Epimers ff two monosaccharides differ from eac- other in their configuration around a singk specificcarbon (otherthan anomeric)atom. L*ei are referred to as epimersto each orher '.Fig,21 For instance, glucoseand galactose are efilwl with regardto carbon 4 (Ca-epimers- -^:i 's they differ in the arrangementof -OH g.'ELcr Ca. Clucose and mannose are epi-'e--' q drl regardto carbon 2 (C2-epimers). The interconversionof epimers e - I r::r'e to galactose and vice versai s i - -^,'- a* H-C:O I H-C-OH I HO-C-H I H-C-OH I H-Q-OH I cHzoH D-Glucose
  18. 18. Ghapter 2 : CABBOHYDFATES 13 Aldotriose (3c) Aldotetroses (4c) cHo I HOCH I Aldo toses HOCH ) I HCOH I cH2oH D-Lyxoee cHo HOCH I I Aldo- HOCH HOCH hexoses HoCH noCH (6c) tl HCOH HCOH tt cHzoH cHzoH D-Galactose D-Talose 'l t- cHo HOCH I HCOH HCOH cH2oH D-Arabinose / JT cHo cHo HCOH HOCH rl HOCH HOCH tl HCOH HCOH tl HCOH HCOH ll cH2oH cH2oH D-Glucose D-Mannose HCOH I HCOH cH2oH D-Ribose / JT cHo cHo tl HCOH HOCH HCOH HCOH tl HCOH HCOH tl HCOH HCOH ll cH2oH cH2oH D-Allose D-Altrose cHo HCOH cHo I HCOH I HCOH I HOCH I HCOH cH2oH D-Gulose cHo I HCOH cHo I HOCH I HCOH I HOCH HCOH I cH2oH D-ldose cHo I HCOH I cH2oH D-Erythrose D.Threooe cHo I HCOH I HOCH I HCOH cH2oH D-Xylose I / / *+ Fig.2.2 : ThestructuralrelationshipbetweenD-aldosesshownin Fischerprojection. (TheconfigurationaroundC2(ed) distinguishesthemembersof eachpair). epimerization, and a group of enzymes- namely-epimerases catalysethis reaction. Enantiomers Enantiomers are a special type of stereoisomers that are mirror images of eachother. The two membersare designatedas D- and L-sugars.Enantiomersof glucose are depicted in Fig.2.5. Majority of the sugarsin the higher animals (includingman) are of D-type (Fig.2.5'1. The term diastereomersis used to represent the sfereoisomers that are not mirror imagesof one another. For a better understanding structure, let us consider the hemiacetals and hemiketals, producedwhen an aldehydeor a with alcohol. of glucose formation of respectively ketone reacts
  19. 19. 14 E}IOCHEMISTRY ?H2oH C:O I cH2oH Dlhydroxyacetone cH2oH I C:O I HOCH HCOH I cH2oH D-Xylulose cH20H I C:O HCOH HCOH I cH2oH D-Ribulose cH2oH I C:O HOCH I HCOH I HCOH I cH2oH D-Fructose cH2oH I C:O I HOCH I HCOH I HCOH I HCOH I cH2oH D-Sedoheptulose Fig.2.3 : Structuresof ketosesof physiologicalimportance. ,H nt-C.1^ + R2-oH l- Rr- LJ Aldefry<b Alcohol Hemiacetal The hydroxyl group of monosaccharidescan react with its own aldehydeor keto functional group to form hemiacetaland hemiketal.Thus, the aldehydegroup of glucoseat C1 reactswith alcohol group at C5 to form two typesof cyclic hemiacetalsnamely a and B, as depicted in Fig.2.6. The configuration of glucose is conveniently represented either by Fischer formulaeor by Haworth projectionformulae. Fyranose and furanose structures Haworth projectionformulaeare depictedby a six-memberedring pyranose(basedon pyran) or a five-memberedring furanose (based on furan).The cyclic formsof glucoseare known as a-D-glucopyranose and c-D-glucofuranose (Fig.2.V. Anomers-nrutarotation The a and p cyclic forms of D-glucose are known as anomers.Thev differ from each other in the configurationonly around C1 known as anomericcarbon(hemiacetalcarbon).In caseof o anomer,the -OH group held by anomeric carbon is on the opposite side of the group -CH2OH of sugarring. The reverseis true for B-anomer.The anomersdiffer in certainphysical and chemical properties. Mutarotation : The a and p anomers of glucose have different optical rotations. The specific optical rotation of a freshly prepared glucose(c anomer)solutionin water is +112.2o which gradually changes and attains an equilibriumwith a constantvalue of +52.7". ln the presenceof alkali, the decreasein optical rotation is rapid. The optical rotation of p-glucose is +18.7o. Mutarotation is defined as the change in the specific optical rotation representing the interconversion of u and p H-C:O I H-C-OH I HO-C-H I HO- C -H H-C-OH I cH2oH D-Galactose H-C:O I H-C-OH I HO-C-H I H .C-OH I H-C-OH I CHzOH D-Glucose H-C=O I HO-C-H I HO-C-H I H-C-OH I H-C-OH I cH2oH D-Mannose H I C:O I f{ c-oH I HC-C-H i-l- c-oH H-C-OH I t"1-c-H HO H O=C HO_C- H I H-C- Cl-i I HO-C-H I HO-C- Fl I H-C- ii I OH Fig.2,4: Structuresof epimers(glucoseand galactose are Co-epimerswhileglucoseand mannoseare C2-epimers). L-Glucose D-Glucose H9.2.5 : Enantiomers(mirrorimages)ofglucose.
  20. 20. t5 Ghapter 2 : CARB I cH20H o'D'Glucose (+ 112.2" fil H6?H o-D-GlucoPYranose 1 H-C:O I H-C-OH I HO-C-H I H-C-OH tc H-C-OH I cH2oH D-Glucose (aldehYdeform) l/A H6?H HOH D-Glucose (aldehydeform,acYclic) iHron ftD-Glucose (+18.7-) (B) HOH FD-GlucoPYranose cH20H forms of D'glucose to an equilihrium mixture' Mutarotationdepictedin Fig'2'6, is summartzeo below. cx-D-Clucose# Equilibriummixture# B-D-Clucose + 112.2" + 52.7" + 18.7" (Specificoptical rotation tctl2p0) The equilibrium mixture contains 63o/" p-anomer and 36"/ocl-anomer of glucose with Fig.2.7: Structurcofglucose-pyranose andfuranosetorms' HOH cr-D-GlucoPYranose cH20H t- H-C-OFi OH HOH cr-D-Glucofuranose 17oopen chainform. ln aqueoussolution'the p forrn 'i, more predominant due to its stable conformation.The cr and p formsof glucoseare interconvertiblewhich occurs through a linear form. The latter, as such, is present in a" insignificantquantitY. Mutarotation of fructose z Frur' exhibits mutarotation.ln case or pyranose ring (six-memberqd' furanose(five-membered)'o' is attained.And fruqt' rotation of -92)2. Ihe conv' to levor ':ut" :;r' on is kn, anome' in alkalir When gt. severalhours,
  21. 21. chapter 2 : CAFIBoHYDFATES 15 I cH2oH cr-D-Glucose (+ 112.2") 1 H-C=C) I H-C-OH I HO-C-H I H-C-OH l5 H-C-OH cH2oH D-Glucose (aldehydeform) HOH D-Glucose (aldehydeform,acyclic) forms of D-glucose to an equilibrium mixture. Mutarotationdepictedin Fi9.2.6, is summarized below. s-D-Clucose# Equilibriummircture# p-D-Glucose + 112.2" + 52.7" + 18.7o (Specificoptical rotation talf;) The equilibrium mixture contains 63"/" p-anomer and 36h cl-anomerof glucosewith cr-D-Glucopyranose 17oopen chain form. In aqueoussolution,the p form is more predominant due to its stable conformation.The s and p formsof glucoseare interconvertiblewhich occurs through a linear form. The latter, as such, is present in an insignificantquantity. Mutarotation of fructose : Fructose also exhibits mutarotation.ln case of fructose,the pyranose ring (six-membered)is converted to furanose(five-membered)ring,till an equilibrium is attained.And fructosehas a specificoptical rotationof -92" at equilibrium. The conversion of dextrorotatory (+) sucrose to levorotatory fructose is explained under inversionof sucrose(seelater in this chapter). REACTIONS OF MONOSACCHARIDES Tautomerization or enolization The processof shiftinga hydrogenatom from one carbon atom to anotherto produce enediols is known as tautomerization. Sugarspossessing anomericcarbon atom undergotautomerization in alkalinesolutions. When glucoseis kept in alkalinesolutionfor severalhours,it undergoesisomerizationto form HOH o-D-Glucopyranose pD-Glucopyranose Fig. 2.6 : Mutarotation of glucose representing a and p anomers (A) Fischer projections (B) Haworth projections. Fig.2.7 : Structureof glucose-pyranose and furanoseforms. 20H cH2oH H c-D-Glucofuranose
  22. 22. 16 BIOCHEMISTFIY H n-C-ot H-C:O ( I H- -OH HO-( HO-( R Enediol (common) Fig.2.8 : Formationof a commonenediolfrom glucose,fructoseandmannose {fr,f,o,F|F|lPffi:!lo.t|tfr,ft:PI:Is?Iboncolnmonstnftar:?l,l D-fructose and D-mannose. This reaction- known as the Lobry de Bruyn-von Ekenstein transformatiorr-results in the formation of a common intermediate-namely enediol--$or all the three sugars,as depicted in Fig.2.8. Theenediolsare highlyreactive,hencesugars in alkaline solution are powerful reducing agents. ft+r,.luleFr'.lgr!s.lFeFtlsF The sugarsare classifiedas reducingor non- reducing.The reducingpropertyis attributedto the free aldehyde or keto group of anomeric carbon. ln the laboratory, many testsare employed to identify the reducing action of sugars.These incfude Benedict's test, Fehling's test, Barfoed's tesf etc. The reduction is much more efficient in the alkaline medium than in the acid medium. The enediolforms(explainedabove)or sugars reduce cupric ions (Cu2+)of copper sulphate to cuprous ions (Cu+), which form a yellow precipitate of cuprous hydroxide or a red precipitate of cuprous oxide as shown next. t2H2O+ CueO{- 2Cu(OH) It may be noted that the reducing property of sugarscannothelp for a specificidentificationof any one sugar,since it is a generalreaction. 0xida*iern Depending on the oxidizing agent used, the terminal aldehyde (or keto) or the terminal alcoholor both the groupsmay be oxidized.For instance,considerglucose: 1. Oxidation of aldehydegroup (CHO ------> COOH) resultsin the formationof gluconicacid. 2. Oxidation of terminal alcohol group (CH2OH------+COOH) leadsto the production of glucuronicacid. Reduetion When treatedwith reducing agentssuch as sodiumamalgam,the aldehydeor keto groupof monosaccharideis reduced to corresponding alcohol, as indicatedby the generalformula : H H-C:O H-C-Ol-t I RR The important monosaccharidesand their correspondingalcoholsare given below. D-Glucose D-Galactose------+D-Dulcitol D-Mannose ------+D-Mannitol D-Fructose --) D-Mannitol+ D-Sorbitol D-Ribose -+ D-Ribitol Sorbitol and dulcitol when accumulate in tissuesin large amounts cause strong osmotic effectsfeadingto swelling of cells,and certain pathologicalconditions.e.g.cataract,peripheral neuropathy,nephropathy.Mannitol is usefulto reduce intracranialtensionbv forced diuresis.
  23. 23. Ghapter 2 : CAFIBOHYDRATES 17 H-C--O I H-C-OH I HO-C-H I H-C-OH I H-C-OH I cH2oH D-Glucose H-C:O I H-C:O I cH20H Hydrorymethylfurfural H-C:O I Formation of esters The alcoholic groups of monosaccharides may be esterified by non-enzymatic or enzymatic reactions. Esterificationof carbo- hydrate with phosphoric acid is a common reaction in metabolism.Glucose 6-phosphate and glucose 1-phosphateare good examples. ATP donates the phosphate moiety in ester formation. lClycoside bond formation (see below) and mutarotation(discussedalready) may also be referred to, as these are also the characteristic propertiesof monosaccharides.l GLYCOSIDES Glycosidesare formed when the hemiacetal or hemiketal hydroxyl group (of anomeric carbon)of a carbohydratereactswith a hydroxyl group of another carbohydrate or a non- carbohydrate (e.g. methyl alcohol, phenol, glycerol). The bond so formed is known as glycosidic bond and the non-carbohydrate moiety (when present)is referredto as aglycone. The monosaccharidesare held together by glycosidic bonds to result in di-, oligo- or polysaccharides(seelaterfor structures). H-C=O I _ + HrN-NH-CuHu H-C-OH R Glucose Phenylhydrazine H-C:N-NH-CoHs I H-C-OH I R Glucohydrazone l7-H2N-NH-C6H' I H-C:N-NH-CoHs I C:N-NH-CoHs I R Glucosazone Fig.2.10: A summatyof osazonefomation H-C-OH C----r tlll H-C-OH Conc.HeSoo H-Q L I rH I U H-C-OH '1 H-C I CHrou 3H2o H-d---l D-Ribose Furfural Fig.2.9 : Dehydration of monosaccharides with concentrated H "SO o. Dehydration When treatedwith concentratedsulfuricacid, monosaccharidesundergodehydrationwith an eliminationof 3 water molecules.Thus hexoses give hydroxymethylfurfuralwhile pentosesgive furfural on dehydration (Fi9.2.9).Thesefurfurals can condense with phenolic compounds (a-naphthol)to form coloured products.This is the chemical basisof the popular Molisch test. In case of oligo- and polysaccharides,they are firsthydrolysedto monosaccharidesby acid,and this is followed by dehydration. Osazone formation Phenylhydrazinein acetic acid, when boiled with reducing sugars, forms osazones in a reactionsummarizedin Fig,2,10. As is evident from the reaction, the first two carbons (Cr and C2) are involved in osazone formation. The sugars that differ in their configuration on these two carbons give the same type of osazones,since the differenceis maskedby bindingwith phenylhydrazine.Thus glucose,fructoseand mannosegive the same type (needle-shaped)osazones. Reducingdisaccharidesalso give osazones- maltose sunflower-shaped,and lactose powder- puff shaped. (RrcprcsentsCrto Crofglucose).
  24. 24. t8 BIOCHEMISTRY Naming of glycosidic bond : The nomenclatureof glycosidic bonds is based on the Iinkagesbetweenthe carbon atomsand the status of the anomeric carbon (o or p). For instance,lactose-which is formed by a bond between C1 of p-galactoseand Ca of glucose- is namedas 0(.1-+ 4) glycosidicbond. The other glycosidicbonds are describedin the structure of di- and polysaccharides. Physiologieally important glycosides 1. Glucovanillin (vanillin-D-glucoside)is a naturalsubstancethat impartsvanilla flavour. 2. Cardiac glycosides(steroidalglycosides): Digoxin and digitoxin contain the aglycone steroidand they stimulatemusclecontraction. 3. Streptomycin, an antibiotic used in the treatmentof tuberculosisis a glycoside. 4. Ouabain inhibits Na+- K+ ATPase and blocksthe activetransportof Na+. DERIVATIVESOF MONOSACCHARIDES Thereare severalderivativesof monosaccha- rides, some of which are physiologically important 1. Sugar acids : Oxidation of aldehyde or primaryalcoholgroupin monosaccharideresults in sugaracids.Cluconic acid is producedfrom glucose by oxidation of aldehyde (C1 group) whereasglucuronicacid is formedwhen primary alcoholgroup (C6)is oxidized. 2. Sugar alcohols (polyols) : They are producedby reductionof aldosesor ketoses.For instance,sorbitol is formed from glucose and mannitol from mannose. 3. Alditols : The monosaccharides, on reduction,yield polyhydroxyalcohols,known as alditols. Ribitol is a constituent of flavin coenzymes; glycerol and myo-inositol are componentsof lipids.Xylitol is a sweetenerused in sugarlessgumsand candies. 4. Amino sugars : When one or more hydroxyl groups of the monosaccharidesare replaced by amino groups, the products formed are amino sugarse.g. D-glucosamine, D-galactosamine.They are present as consti- tuentsof heteropolysaccharides. The amino groups of amino sugars are sometimes acetylated e.g. N-acetyl D-gluco- samrne. N-Acetylneuraminic acid (NANA) is a derivativeof N-acetylmannoseand pyruvicacid. It is an important constituentof glycoproteins and glycolipids.The term sialicacid is usedto include NANA and its other derivatives. Certain antibiotics contain amino sugars which may be involvedin the antibioticactivity e.g. erythromycin. 5. Deoxysugars: These are the sugarsthat contain one oxygen lessthan that presentin the parent molecule. The groups -CHOH and -CH2OH become-CH2 and -CH3 due to the absenceof oxygen.D-2-Deoxyriboseis the most important deoxysugarsince it is a structural constituentof DNA (in contrastto D-ribose in RNA). 6. L-Ascorbic acid (vitamin C) : This is a water-solublevitamin, the structureof which closelyresemblesthat of a monosaccharide. The structuresof selected monosaccharide derivativesare depictedin Fig.2.l1. Among the oligosaccharides,disaccharides are the most common (Fig.2,l2).As is evident from the name, a disaccharideconsistsof two monosaccharideunits(similaror dissimilar)held together by a glycosidic hond. They are crystalline,water-solubleand sweetto taste.The disaccharidesare of two types '1. Reducingdisaccharideswith free aldehyde or keto group e.g. maltose, lactose. 2. Non-reducingdisaccharideswith no free aldehyde or keto group e.g. sucrose,trehalose. Maltose Maltose is composed of two a-D-glucose unitsheldtogetherby cl (1 -+ 4) glycosidicbond. Thefreealdehydegrouppresenton C1of second glucoseanswersthe reducingreactions,besides
  25. 25. Ghapter & : CAFIBOHYDRATES 19 H-C:O I H-C-OH I HO-C-H I H-C-OH I H-C-OH I COOH D-Glucuronicacid OHH D-2-Deoxyribose cH2oH I H-C-OH I cH2oH Glycerol H NHz D-Glucosamine HOH myo-lnositol H3C-C--HN HOH N-Acetylneuraminicacid Fiq.2.11 : Structuresol monosaccharidederivatives(selectedexamples). the osazone formations (sunflower-shaped). Maltosecan be hydrolysedby dilute acid or the enzyme maltaseto liberate two moleculesof cr-D-glucose. ln isomaltose,the glucose units are held togetherby o (1 --+6) glycosidiclinkage. Cellobioseis another disaccharide,identical in structurewith maltose,exceptthat the former has p (1 -r 4) glycosidiclinkage.Cellobioseis formedduringthe hydrolysisof cellulose. Suoroee Sucrose(canesugar)isthe sugarof commerce, mostlyproducedby sugarcane and sugarbeets. Sucrose is made up of a-D-glucose and p- D-fructose.The two monosaccharidesare held togetherby a glycosidicbond (a1-+ B2),between Cj of c-glucose and C2 of B-fructose.The reducing groups of glucose and fructose are involvedin glycosidicbond, hencesucroseis a non-reducing sugar,and it cannot form osazones. Sucroseis the major carbohydrateproduced in photosynthesis. lt is transported into the storageorgansof plants (such as roots, tubers and seeds).Sucroseis the mostabundantamong the naturallyoccurring sugars.lt has distinct advantagesover other sugarsas a storageand transoortform. This is due to the fact that in sucrose,both the functional groups (aldehyde and keto)are held togetherand protectedfrom oxidativeattacks. Sucrose is an important source of dietary carbohydrate.lt is sweeter than most other commonsugars(exceptfructose)namelyglucose, lactoseand maltose.Sucroseis employed as a sweeteningagentin food industry.The intestinal enzyme-sucrase-hydrolysessucroseto glucose and fructosewhich are absorbed. F-aetsse Lactoseis more commonlv known as milk sugarsinceit is the disaccharidefound in milk. Lactoseis composed ol p-D-galactoseand B-D- glucoseheld togetherby 0 (1 -r a) glycosidic bond.The anomericcarbonof C1glucoseis free, hence lactoseexhibits reducing propertiesand formsosazones(powder-puffor hedgehogshape). Lactose of milk is the most important carbohydratein the nutritionof young mammals. It is hydrolysedby the intestinalenzyme lactase to glucoseand galactose. lnversion ef suerose Sucrose,as such is dextrorotatory(+66.5o). But, r,r,hen hydrolysed, sucrose becomes levorotatory(-28.2"). The processof change in optical rotation from dextrorotatory (+) to levorotatory(-) is referredto as inversion.The
  26. 26. BIOCHEMISTF|Y HOH Glucose Fructose Sucrose (a-D-glucosyl(1 --+2)p-D-fructose) Galactose Lactose (p-D-galactosyl(1 -+ a)p-D-glucose) Fig. 2.12 : Structures of disaccharides -maltose, sucrose and lactose. hydrolysed mixture of sucrose, containing gfucoseand fructose, is known as invert sugar. The processof inversionis explainedbelow. Hydrolysisof sucroseby the enzyme sucrase (invertasdor dilute acid liberatesone molecure each of glucoseand fructose.ft is postulatedthat sucrose (dextro) is first split into a-D- glucopyranose(+52.5") and p-D-fructofuranose, both being dextrorotatory. However, p-D- fructofuranoseis lessstableand immediatelygets converted to p-D-fructopyranose which is stronglylevorotatory(-92"). The overalleffectis that dextro sucrose (+66.5") on inversion is converted to levo form (28.2'. Polysaccharides(or simply glycans)consistof repeat units of monosaccharides or their derivatives,held togetherby glycosidicbonds. Theyareprimarilyconcernedwith two important functions-structural,and storageof energy. Polysaccharides are linear as well as branched polymers. This is in contrast to structureof proteinsand nucleicacidswhich are only linear polymers. The occurrence of branchesin polysaccharidesis due to the fact that glycosidic linkagescan be formed at any one of the hydroxylBroupsof a monosaccharide. Polysaccharidesare of two types 1. Homopolysaccharideswhich on hydrolysis yield only a singletype of monosaccharide.They are named based on the nature of the monosaccharideunit. Thus,glucans arepolymers of glucose whereas fructosans are polymers of fructose. 2. Heteropofysaccharideson hydrolysisyield a mixture of a few monosaccharidesor their derivatives. $tarch Starch is the carbohydrate reserveof plants which is the most importantdietary sourcefor higheranimals,includingman. High contentof starchis found in cereals,roots,tubers,vegetables etc. Starch is a homopolymer composed of D-glucoseunits held by a-glycosidicbonds. lt is known as glucosan or glucan. Starch consists of two polysaccharide components-water soluble amylose (15-20o/ol and a water insoluble amylopectin (80-85%). Chemically, amylose is a long unbranched chain with 200-1,00OD-glucoseunitsheld by c (1 + 4) glycosidiclinkages.Amylopectin,on the other hand, is a branchedchain with a (1 --r 6t glycosidicbondsat the branchingpointsand c (1 -; 4) linkages everywhere else (Fig.2.13). Amylopectin molecule containing a few
  27. 27. ChapteF 2 : CARBOHYDFATES 21 D-Glucose D-Glucose Amylopectin o-Amylose +- (1-* 6) Branch MainchainLg 6nu vt t2 thousandglucoseunits looks like a branched tree (20-30 glucoseunits per branch). Starches are hydrolysed by amylase (pancreaticor salivary)to liberatedextrins,and finally maltoseand glucoseunits.Amylaseacts specificallyon a (1 -+ 4) glycosidicbonds. Dextrins Dextrins are the breakdown products of starchby the enzyme amylaseor dilute acids. Starch is sequentially hydrolysed through different dextrins and, finally, to maltose and glucose.The variousintermediates(identifiedby iodine colouration) are soluble starch (blue), amylodextrin (violet), erythrodextrin (red) and achrodextrin (no colour). Inulin fnulin is a polymerof fructosei.e., fructosan. It occursin dahlia bulbs,garlic,onion etc. lt is a low molecularweight (around5,000) poly- saccharideeasilysoluble in water. Inulin is not utilized by the body. lt is used for assessing kidney function through measurement of glomerular filtration rate (GFR). Glycogen Clycogen is the carbohydrate reserve in animals,henceoften referredro asanimal starch. It is present in high concentration in liver, followed by muscle,brainetc.Clycogenis also found in plantsthat do not possesschlorophyll (e.9.yeast,fungi). The structureof glycogenis similarto that of amylopectin with more number of branches. Glucoseis the repeatingunit in glycogenjoined togetherby u (1 + 4) glycosidicbonds,and a (1 + 6) glycosidic bonds at branching points (Fi9.2.1Q.The molecularweight (up to 1 x 108) and the numberof glucoseunits (up to 25,000) vary in glycogendependingon the sourcefrom which glycogenis obtained.
  28. 28. 22 BIOCHEMISTRY Fiq.2.14: Structureofglycogen(A)Generalstructure (B)Enlargedat a branchpoint. Cellulose Celluloseoccursexclusivelyin plantsand it is the most abundant organic substancein plant kingdom. lt is a predominantconstituentof plant cell wall. Celluloseis totally absent in animal body. Cellulose is composed of p-D-glucose units linked by 9 0 -+ 4) glycosidic bonds(Fi9.2.1fl. Cellulosecannot be digestedby mammals- includingman-due to lack of the enzymethat cleavesB-glycosidicbonds(a amylasebreakscr bondsonly). Certainruminantsand herbivorous animalscontainmicroorganismsin thegutwhich produce enzymesthat can cleave p-glycosidic bonds. Hydrolysis of cellulose yields a disaccharide cellobiose, followed by P-D- glucose. Cellulose, though not digested, has great importancein human nutrition. lt is a major constituentol fiber, the non-digestablecarbo- hydrate.The functions of dietary fiber include decreasing the absorption of glucose and cholesterolfrom the intestine,besidesincreasing the bulk of feces. (For details,Chapter 23) Ghitin Chitin is composed of N-acetyl D- glucosamineunits held togetherby F (1 -+ a) glycosidicbonds.lt isa structuralpolysaccharide found in the exoskeletonof some invertebrates e.g. insects,crustaceans. When the polysaccharidesare composedof differenttypesof sugarsor their derivatives,they are referred to as heteropolvsaccharidesor heteroglycans. MUCOPOLYSACCHARIDES Mucopolysaccharidesare heteroglycansmade up of repeatingunitsof sugarderivatives,namely amino sugarsand uronic acids.Theseare more commonly known as glycosaminoglycans (GAG).Acetylatedamino groups,besidessulfate and carboxyl groups are generally present in CAC structure.The presenceof sulfate and carboxyl groups contributesto acidity of the molecules, making them acid mucopoly,- saccharides. Someof the mucopolysaccharidesare found in combination with proteins to forrn mucoproteins or mucoids or proteoglycans (Fig.2.l6l.Mucoproteinsmay containup to 95o, carbohydrate and 5o/"protein. S-D-Glucose T N T Ot (B) 9H2OH uqt, CH2oH y'-O., , F--o. ,r4-Or - (+ i) - r+ ,L^_K. X^_-oJ, ,./'o-'- J - L-/ " --l Fig. 2.15 : Structureof cellulose(The repeat:r; -- ' may be several thousands).
  29. 29. CARBOHYDRATES 23 Fig. 2.16 : Diagrammaticrepresentationof a prateoglycan complex. Mucopolysaccharidesareessentialcomponents of tissue structure.The extracellularspacesof tissue (particularlyconnective tissue-cartilage, skin, blood vessels,tendons)consistof collagen and elastinfibersembeddedin a matrixor ground substance.Thegroundsubstanceis predominantly composedof CAC. The importantmucopolysaccharidesincluoe hyaluronicacid, chondroitin4-sulfate,heparin, dermatansulfateand keratansulfate(Fig.Z.'[1. j'i' ,ir:r:, | '.i. :,{,tiiiEl'l Hyaluronicacid is an importantGAC found in the groundsubstanceof synovialfluid of joints and vitreoushumor of eyes.it is also presentas a ground substancein connectivetissues,and forms a gel aroundthe ovum. Hyaluronicacid servesas a lubricantand shock absorbantin joints. BToMEDtCAt/ CLtft|ICALCO$CEpTS Hyaluronicacid rlr Glucose is the most important energy sourceol carbohgdratesto the mammals (except ruminants).The bulk of dietary carbohydrote(starch)is dlgestedond finally obsorbedas glucose into the body. Ea Dextrose (glucosein solution in dextrorotatory form) is frequently used in medical Rq'- CF practice. Fructoseis obundantly found in the semen which is utilized by the spermsfor energy. Seueral diseoses are associated with carbohydrate.se.g., diabetes mellitus, glycogen storage diseoses,galactosemia. trs Accumulation of sorbitol and dulcitol in the fissuesmoy cause certoin pathological conditionse.g. cotaract, nephropothy. t-s' Inulin, a polymer of t'ructose,is used fo ossessrenal function by meosuringglomerular filtration rate (GFR). ue The non-digestiblecarbohydratecellulose playsa signilicant role in human nutriticsn. These include decreasing the intestinal absorption ol glucose and cholesterol, qnd increasingbulk of feces to ouoid eonstipation. rt The mucopolysaccharidehyaluronic acid seruesas a lubricant and shock absorbantin ioints. The enzgmehgaluronidaseof semendegradesthe gel (contains hyaluronic acid)around the ouum. This qllows eft'ectiuepenetration of sperm into the ouum. The mucopolysaccharideheparin is an onticoagulant(preuentsblood clotting). The suruiual of Antarctic lish below -2"C is attributed to the antit'reeze glycoproteins. streptomycin is a glycosideemployed in the treatment oJ tuberculosis. !3:. [j- IF s: -;-- s' -sS't/:- -'-
  30. 30. 24 BIOCHEMISTFIY Hyaluronic acid is composed of alternate units of D-glucuronic acid and N-acetyl D-glucosamine.These two molecules form disaccharideunits held togetherby 0 (t -+ S) glycosidic bond (Fi9,2,15).Hyaluronic acid containsabout 250-25,000 disaccharideunits (heldby p 1 -+ 4 bonds)with a molecularweight uo to 4 million. Hyaluronidase is an enzyme that breaks (B1 -+ 4 linkages)hyaluronic acid and other CAC. This enzyme is present in high concentrationin testes,seminalfluid, and in certainsnakeand insectvenoms.Hyaluronidase of semen is assignedan important role in fertilization as this enzyme clears the gel (hyaluronicacid) around the ovum allowing a better penetration of sperm into the ovum. Hyaluronidaseof bacteriahelps their invasion into the animaltissues. Ghondroitin sulfates Chondroitin 4-sulfate (Greek: chondros- cartilage) is a major constituent of various mammalian tissues(bone, cartilage,tendons, heart,valves,skin,corneaetc.).Structurally,it is comparablewith hyaluronicacid. Chondroitin 4-sulfateconsistsof repeatingdisaccharideunits composedof D-glucuronicacid and N-acetyl D-galactosamine4-sulfate(Fig.2.lV. Chondroitin5-sulfateis alsopresentin many tissues.As evident from the name, the sulfate group is found on C6 insteadof Ca. Heparin Heparin is an anticoagulant(preventsblood clotting)thatoccursin blood,lung,liver,kidney, spleenetc. Heparin helps in the releaseof the enzyme lipoprotein lipase which helps in clearingthe turbidityof lipemic plasma. Heparin is composedof alternatingunits of N-sulfoD-glucosamine6-sulfateand glucuronate 2-sulfate(Fi9.2.17). Dermatan sulfate The name dermatansulfateis derived from the fact that this compoundmostlyoccursin the skin. lt is structurallyrelated to chondroitin D-Glucuronicacid N-Acetylglucosamine Hyaluronic acid H NH-CO-CH3 N-Acetylgalactosamine 4-sulfate Chondroitin 4-sulfate o- D-Glucuronate-2-sulfateN-Sulfoglucosamine 6-sulfate Heparin t -o'r H NH_CO_CH. N-Acetylgalactosamine 4-sulfate Dermatansulfate H NH_CO :- N-Acetylglucosamine 6-sulfate Keratansulfate Fiq.2.17 : Structuresof commonglycosaminogi',-;-: - D-Glucuronicacid H O-SO; -o-so3 H NH-SOa qH2oH o the disaccharidesas repeatingunits.
  31. 31. Ghapter 2 : CAFIBOHYDHATES 25 Glycosaminoglycan Composition Tissuedistribution Function(s) Hyaluronicacid D-Glucuronicacid, N-acetylglucosamine Connectivetissue,synovialfluid, vitroushumor Servesasalubricant.and shockabsorber.Promotes woundhealing Chondroitinsulfate D-Glucuronicacid, N-acetylgalactosamine 4-sulfate Cartilage,bone,skin,bloodvessel walls Helpstomaintainthestructure andshapesoftissues Heparin D-Glucuronate2-sulfate,Blood,lung,liver,kidney,spleen N-sulfoglucosamine 6-sulfate Actsasananticoagulant Dermatansulfate L-lduronicacid,N-acetyl- galactosamine4-sulfate Bloodvesselvalves,heartvalves, Maintainstheshapesoftissues skin Keratansulfate D-Galactose,N-acetyl- glucosamine6-sulfate Cartilage,cornea,connective tissues Keepscorneatransparent 4-sulfate.The only differenceis that there is an inversion in the configuration around C5 of D-glucuronic acid to form L-iduronic acid (Fi9.2.1V. Keratan sulfate It is a heterogeneousCAG with a variable sulfate content, besides small amounts of mannose, fructose, sialic acid etc. Keratan sulfateessentiallyconsistsof alternatingunitsof D-galactosamine and N-acetylglucosamine 6-sulfate. A summaryof the glycosaminoglycanswith regardto composition,distributionand functions is given in Table 2.3. Several proteins are covalently bound to carbohydrateswhich are referredto as glyco- proteins. The carbohydrate content of glycoproteinvarie