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Evaluation of fractions of selected African plants for antimicrobial activity
    against Mycobacterium tuberculosis

    Richin John Koshy, Nadir Khalil, Marie Larson, Henrik Andersson, Johanna
    Raffetseder, Elsje Pienaar, Daniel Eklund, Asaad Khalid and Maria Lerm




                     Masters in Medical Biosciences
                       Degree Project (45 ECTS)



,
Historical Background
                     Neolithic Time
                         2400 BC - Egyptian mummies
                          spinal columns
                     460 BC
                         Hippocrates, Greece
                            First clinical description:
                             Phthisis / Consumption
                            (I am wasting away)
                     500-1500 AD
                         Roman occupation of Europe it
                          spread to Britain
                     1650-1900 AD
                         White plague of Europe,
                          causing one in five deaths
                                                           2
Discovery of Mycobacterium
tuberculosis       24th March 1882 (Robert
                         Koch) TB Day
                          Discovery of staining
                           technique that identified
                           Tuberculosis bacillus
                          Definite diagnosis made
                           possible and thus treatment
                           could begin


                        1890 (Robert Koch)
                          Tuberculin discovered
                          Diagnostic use when injected
                           into skin



                                                          3
Mycobacteria                Small, rod-shaped, aerobic bacilli


                            Present in the environment, soil
                             and water


                            High concentration of lipids and
                             wax in the cell wall


                            M tuberculosis grows quite
                             slowly and colonies do not appear
                             on solid media up to 2.5 -5 week



www.lookfordiagnosis.com




                                                                  4
Transmission
The spread of M. tuberculosis involves a 3-step process:
   Transmission of bacteria,
   Establishment of infection, and
   Progression to disease.




                                                    Netter atlas of Human Anatomy

                                                                                    5
Pharmacological discoveries

                     • 1946 p-aminosalicylic acid
                     • 1948-1950
                        – Combination of Strep. and
                          PAS
                     • 1952 Isoniazid.
                        – Replaces sanatorium as major
                          treatment
                        – Patients can be treated as out-
                          patients
                     • 1954 Pyrazinamide. (PZA)




                                                            6
 1956-1960
   Combination therapy
    of INH and PZA
    cures TB
 1955 Cycloserine
 1962 Ethambutol
 1963 Rifampicin
 1970-1977
   Combination of
    Rifampicin and
    Isoniazid adopted as
    International regime
    for treatment of TB



                           7
World Health Organization (WHO) and the
International Union Against Tuberculosis and
Lung Diseases

WHO and other agencies replaced the term primary resistance by the term
“drug resistance among new cases” and acquired resistance by the term
“drug resistance among previously treated cases




                                                                          8
 Drug resistance in mycobacteria is defined as a decrease in sensitivity to a
  sufficient degree that the strain concerned is different from a sample of
  wild strains of human type


 Multi-drug resistant tuberculosis is resistance to Isoniazid and Rifampicin.
  It is incorrect to classify a patient has having multi-drug resistant disease if
  they have an infection with a bacterium susceptible to Rifampicin but
  resistant to many other drugs


    XDR TB is resistant to all first line drugs namely; Isoniazid and Rifampin
    and Three or more second line drugs (SLD’S) that are used to treat MDR-
    TB


 No drugs available to treat resistant strains since none has been developed
  in the last 40 years


                                                                                     9
Epidemiology of MDR TB

                    •   490,000 new cases of MDR-TB
                        each year, with >110,000 deaths1
                    •   Accounts for 5% of 9 million new
                        cases of TB2
                    •   MDR-TB rates higher than ever
                        (up to 22.3%), particularly in
                        former Soviet Union countries
                    •   XDR-TB reported by as many as
                        49 countries
                    •   Recent WHO/IUATLD Global
                        Surveillance report indicated 7.5%
                        (301/4012) of MDR TB to be XDR4
                    •   Around 40,000 XDR-TB cases
                        emerge every year1
                                                             10
Mechanisims of Drug Resistance in
Tuberculosis




                        Lipincott Textbook of Pharmacology


                                                             11
Reasons identified for resistance

 Deficient or deteriorating TB control programmes resulting in
  inadequate administration of effective treatment


 Poor case holding, administration of sub-standard drugs, inadequate or
  irregular drug supply and lack of supervision


 Massive bacillary load, illiteracy and low socio-economic status of the
  patients, the epidemic of HIV infection, laboratory delays in
  identification and susceptibility testing of M. tuberculosis isolates




                                                                            12
Impact of resistance

Huge individual as well as public health consequences in terms of


 Increased mortality
 Prolonged periods of infectiousness with increased risk of
  transmission of resistant pathogens to others
 Indirect costs (prolonged absence from work, etc)
 Increased direct cost (longer hospital stay, use of more expensive 2nd
  or 3rd line drugs




                                                                           13
Drug Discovery

 Traditionally used plants are a valuable source for the discovery of
  modern drugs


 Screening of Chinese herbal medicine led to introduction of
  artemisinin from the leaves of Artemisia annua which is used
  worldwide for treatment against malaria


 Shifting the screening strategy from a single enzyme targets to a
  whole bacterial cell level have been showing successful results as it
  has a holistic approach and only gives hits that can enter the bacterium
  through the cell wall


                                                                             14
Preliminary studies

                       Rosmarinus officinalis L (RO)
                       (Flowers/Leaves)


                       Antimicrobial
                       Antiviral




                                                        15
Preliminary studies
                       Khaya senegalenesis leaves
                        (KSL)
                       Khaya senegalenesis barks
                        (KSB)


                       Fever remedy
                       Antimicrobial
                       Antiprotozoal




                                                     16
Hypothesis


   Fractions of Khaya Senegenalenesis and Rosimarinus Officinalis L
    possess anti-microbial properties


AIM


 To identify fractions of plant extracts used traditionally to treat
  infectious diseases in African countries for possible antimicrobial
  activity against M tuberculosis




                                                                        17
Materials and methods

                                  Mycobacterial
                                    culture

              Infection of
                human                              Fractions of Plant
            macrophages with                       Extracts prepared
             M tuberculosis                           with DMSO




       Cytotoxicity with
                                                           Analysis of
         hMDM and
                                                         bacterial growth
         THP-1 cells
                                                          by lumometry




             THP-1 cell culture                    Determination of
                                                     CFU plating

                                  Separation and
                                    culture of
                                     primary
                                    monocytes

                                                                            18
19
Monocytes were cultured in   Monocytes are
complete DMEM medium and     diffrentiated into
incubated at 37ºC.           macrophages.




                                                  20
Bacteria cultured   and   OD   Monocytes were cultured in       Macrophages infected    with
measured                       complete DMEM medium and         bacteria at MOI 10      and
                               incubated at 37ºC. Monocytes     fractions of extracts
                               diffrentiated into macrophages




                                                                                           21
Results:
       Assesing Mycobacterial growth using Luminometry
       in the presence of RO fractions (0.00625 mg/ml)




                                                         22
Assesing Mycobacterial growth using Luminometry in the
presence of Khaya senegalenesis bark and leaves
[KSB/KSL] (0.00625 mg/ml)




                                                         23
Viability of Macrophages treated with RO and KSB fractions
(10, 1 and 0.1 mg/ml)


        10 mg/ml                1 mg/ml                      0.1 mg/ml




                                                                         24
Viability of THP-1 macrophages treated with RO and KSB
fractions (10, 1 and 0.1 mg/ml)



  10 mg/ml                1 mg/ml                        0.1 mg/ml




                                                                     25
Viability of infected macrophages treated with RO and KSB
fractions (0.1 mg/ml)




                                                            26
Assessing intracellular Mycobacterial growth using Luminometry
in the presence of Rosimarinus officinalis [RO] (0.1mg/ml)




                                                                 27
Assessing intracellular Mycobacterial growth using Luminometry
in the presence of selected Khaya senegalenesis bark [KSB]
(0.1mg/ml)




                                                                 28
Conclusion
    Plant extract fractions of K Senegalenesis and R Officinalis were
    analysed for anti-mycobacterial activities which yielded four fractions
    to have distinct anti-mycobacterial properties.
    High-throughput screening using luciferase determines mycobacterial
    growth giving conclusive results.
    Inhibition of growth by these extracts was observed in both systems
    giving inference about their antituberculous activity which appears to
    be meaningful.
 Biologic actions of K Senegalenesis have been attributed to a
  complicated concert of compounds for its synergestic and antagonistic
  activity. This has enabled the pharmacological and biological
  properties of the plant in exerting its anti-microbial properties.

 Further phytochemical studies need carried out in order to find the
  active compound with inhibition.

                                                                              29
Acknowledgement

 First I will like to give my greatest appreciation to my supervisor
  Maria Lerm for her direction, encouragement and support throughout
  the period of my project. I am happy that I had the opportunity to
  work under her supervision and ever thankful for all that she taught
  me

 A big thanks to Nadir for everything and keeping good company

 I also express my gratitude to Johanna Raffetseder, Marie
  Larsson, Elsje Pienaar and Daniel Eklund for introducing me to
  most of the methods i used in this project and more and also for
  always being there to answer numerous questions I had.

 Finally but not the least, I will like to say a big thanks to all the staff
  of the department

                                                                                30
Thank You




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Anti TB Drugs and identifying lead compounds for future drug devrlopment

  • 1. Evaluation of fractions of selected African plants for antimicrobial activity against Mycobacterium tuberculosis Richin John Koshy, Nadir Khalil, Marie Larson, Henrik Andersson, Johanna Raffetseder, Elsje Pienaar, Daniel Eklund, Asaad Khalid and Maria Lerm Masters in Medical Biosciences Degree Project (45 ECTS) ,
  • 2. Historical Background  Neolithic Time  2400 BC - Egyptian mummies spinal columns  460 BC  Hippocrates, Greece  First clinical description: Phthisis / Consumption (I am wasting away)  500-1500 AD  Roman occupation of Europe it spread to Britain  1650-1900 AD  White plague of Europe, causing one in five deaths 2
  • 3. Discovery of Mycobacterium tuberculosis  24th March 1882 (Robert Koch) TB Day  Discovery of staining technique that identified Tuberculosis bacillus  Definite diagnosis made possible and thus treatment could begin  1890 (Robert Koch)  Tuberculin discovered  Diagnostic use when injected into skin 3
  • 4. Mycobacteria  Small, rod-shaped, aerobic bacilli  Present in the environment, soil and water  High concentration of lipids and wax in the cell wall  M tuberculosis grows quite slowly and colonies do not appear on solid media up to 2.5 -5 week www.lookfordiagnosis.com 4
  • 5. Transmission The spread of M. tuberculosis involves a 3-step process: Transmission of bacteria, Establishment of infection, and Progression to disease. Netter atlas of Human Anatomy 5
  • 6. Pharmacological discoveries • 1946 p-aminosalicylic acid • 1948-1950 – Combination of Strep. and PAS • 1952 Isoniazid. – Replaces sanatorium as major treatment – Patients can be treated as out- patients • 1954 Pyrazinamide. (PZA) 6
  • 7.  1956-1960  Combination therapy of INH and PZA cures TB  1955 Cycloserine  1962 Ethambutol  1963 Rifampicin  1970-1977  Combination of Rifampicin and Isoniazid adopted as International regime for treatment of TB 7
  • 8. World Health Organization (WHO) and the International Union Against Tuberculosis and Lung Diseases WHO and other agencies replaced the term primary resistance by the term “drug resistance among new cases” and acquired resistance by the term “drug resistance among previously treated cases 8
  • 9.  Drug resistance in mycobacteria is defined as a decrease in sensitivity to a sufficient degree that the strain concerned is different from a sample of wild strains of human type  Multi-drug resistant tuberculosis is resistance to Isoniazid and Rifampicin. It is incorrect to classify a patient has having multi-drug resistant disease if they have an infection with a bacterium susceptible to Rifampicin but resistant to many other drugs  XDR TB is resistant to all first line drugs namely; Isoniazid and Rifampin and Three or more second line drugs (SLD’S) that are used to treat MDR- TB  No drugs available to treat resistant strains since none has been developed in the last 40 years 9
  • 10. Epidemiology of MDR TB • 490,000 new cases of MDR-TB each year, with >110,000 deaths1 • Accounts for 5% of 9 million new cases of TB2 • MDR-TB rates higher than ever (up to 22.3%), particularly in former Soviet Union countries • XDR-TB reported by as many as 49 countries • Recent WHO/IUATLD Global Surveillance report indicated 7.5% (301/4012) of MDR TB to be XDR4 • Around 40,000 XDR-TB cases emerge every year1 10
  • 11. Mechanisims of Drug Resistance in Tuberculosis Lipincott Textbook of Pharmacology 11
  • 12. Reasons identified for resistance  Deficient or deteriorating TB control programmes resulting in inadequate administration of effective treatment  Poor case holding, administration of sub-standard drugs, inadequate or irregular drug supply and lack of supervision  Massive bacillary load, illiteracy and low socio-economic status of the patients, the epidemic of HIV infection, laboratory delays in identification and susceptibility testing of M. tuberculosis isolates 12
  • 13. Impact of resistance Huge individual as well as public health consequences in terms of  Increased mortality  Prolonged periods of infectiousness with increased risk of transmission of resistant pathogens to others  Indirect costs (prolonged absence from work, etc)  Increased direct cost (longer hospital stay, use of more expensive 2nd or 3rd line drugs 13
  • 14. Drug Discovery  Traditionally used plants are a valuable source for the discovery of modern drugs  Screening of Chinese herbal medicine led to introduction of artemisinin from the leaves of Artemisia annua which is used worldwide for treatment against malaria  Shifting the screening strategy from a single enzyme targets to a whole bacterial cell level have been showing successful results as it has a holistic approach and only gives hits that can enter the bacterium through the cell wall 14
  • 15. Preliminary studies  Rosmarinus officinalis L (RO)  (Flowers/Leaves)  Antimicrobial  Antiviral 15
  • 16. Preliminary studies  Khaya senegalenesis leaves (KSL)  Khaya senegalenesis barks (KSB)  Fever remedy  Antimicrobial  Antiprotozoal 16
  • 17. Hypothesis  Fractions of Khaya Senegenalenesis and Rosimarinus Officinalis L possess anti-microbial properties AIM  To identify fractions of plant extracts used traditionally to treat infectious diseases in African countries for possible antimicrobial activity against M tuberculosis 17
  • 18. Materials and methods Mycobacterial culture Infection of human Fractions of Plant macrophages with Extracts prepared M tuberculosis with DMSO Cytotoxicity with Analysis of hMDM and bacterial growth THP-1 cells by lumometry THP-1 cell culture Determination of CFU plating Separation and culture of primary monocytes 18
  • 19. 19
  • 20. Monocytes were cultured in Monocytes are complete DMEM medium and diffrentiated into incubated at 37ºC. macrophages. 20
  • 21. Bacteria cultured and OD Monocytes were cultured in Macrophages infected with measured complete DMEM medium and bacteria at MOI 10 and incubated at 37ºC. Monocytes fractions of extracts diffrentiated into macrophages 21
  • 22. Results: Assesing Mycobacterial growth using Luminometry in the presence of RO fractions (0.00625 mg/ml) 22
  • 23. Assesing Mycobacterial growth using Luminometry in the presence of Khaya senegalenesis bark and leaves [KSB/KSL] (0.00625 mg/ml) 23
  • 24. Viability of Macrophages treated with RO and KSB fractions (10, 1 and 0.1 mg/ml) 10 mg/ml 1 mg/ml 0.1 mg/ml 24
  • 25. Viability of THP-1 macrophages treated with RO and KSB fractions (10, 1 and 0.1 mg/ml) 10 mg/ml 1 mg/ml 0.1 mg/ml 25
  • 26. Viability of infected macrophages treated with RO and KSB fractions (0.1 mg/ml) 26
  • 27. Assessing intracellular Mycobacterial growth using Luminometry in the presence of Rosimarinus officinalis [RO] (0.1mg/ml) 27
  • 28. Assessing intracellular Mycobacterial growth using Luminometry in the presence of selected Khaya senegalenesis bark [KSB] (0.1mg/ml) 28
  • 29. Conclusion  Plant extract fractions of K Senegalenesis and R Officinalis were analysed for anti-mycobacterial activities which yielded four fractions to have distinct anti-mycobacterial properties.  High-throughput screening using luciferase determines mycobacterial growth giving conclusive results.  Inhibition of growth by these extracts was observed in both systems giving inference about their antituberculous activity which appears to be meaningful.  Biologic actions of K Senegalenesis have been attributed to a complicated concert of compounds for its synergestic and antagonistic activity. This has enabled the pharmacological and biological properties of the plant in exerting its anti-microbial properties.  Further phytochemical studies need carried out in order to find the active compound with inhibition. 29
  • 30. Acknowledgement  First I will like to give my greatest appreciation to my supervisor Maria Lerm for her direction, encouragement and support throughout the period of my project. I am happy that I had the opportunity to work under her supervision and ever thankful for all that she taught me  A big thanks to Nadir for everything and keeping good company  I also express my gratitude to Johanna Raffetseder, Marie Larsson, Elsje Pienaar and Daniel Eklund for introducing me to most of the methods i used in this project and more and also for always being there to answer numerous questions I had.  Finally but not the least, I will like to say a big thanks to all the staff of the department 30
  • 31. Thank You www.liu.se