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WHY ARABIDOPSIS THALIANA USED AS
A MODEL PLANT ???
MBB 601: Advances in plant molecular biology: 3+0
Presented By
Mr. Ekatpure Sachin
Department of Plant Biotechnology
1
INTRODUCTION
 Arabidopsis thaliana also known as thale-cress or mouse-ear
cress or arabidopsis
 It is a member of Brassicaceae family
 Grows as weed in many parts of world
 For a complex multicellular eukaryote
 Except in role of model genetic organism it has no economic
use
 Number of variants were found called as ecotypes
 That are vary in size, shape, physiological characters and DNA
sequence 2
INTRODUCTION CONT…
 Identified in the 16th century
 1st mutant was reported in the year of 1873
by Alexander Braun, describing a double
flower phenotype
 In the year of 1980th the first genetic map of
Arabidopsis was prepared
 Now a days A. thaliana mostly used in the study of
genome structure, gene regulation, development
and evolution of plants
 Also it provides the important basic information
about plant genetics, that is applied to other
economically important plants 3
Advantages
4
 Small genome
 Small plant size
 Short generation time i.e. 6
weeks
 Each plant can produce the
10,000 to 40,000 seeds
 It has ability to grow in the
laboratory
 Many variants are available
 Ability to self fertilization and out
cross
GENOME
5
 It having five pairs of
chromosomes (2n=10)
 found 125 million base
pairs of DNA
 18 % genes were common
with human genome
 Average gene size is
about 200 bp
 1st plant has done
Complete genome were
sequenced in year of 2000
CONTRIBUTION IN THE GENETICS
 A. thaliana majorly involved in the study of-
 Plant Genome Organization
 Gene Regulation
 Genetics of plant development
 Genetic of flowering
6
STATS
7
 Taxonomy: Flowering
plant
 Angiosperm
 Size: 10 to 30 cm
 Habitat: Meadows/
Grassland
 Anatomy: Roots,
flowers, Simple Leaves,
One Primary
shoot
MAKING KNOCKOUT PLANTS
o It is easily susceptible to Agrobacterium which contain
Ti plasmids, the vehicles for T-DNA insertion
o Easy to establish many knockout lines within short
amount of time
o Basic life processes similar to those of more complex
crop plants such as corn, soybean, and wheat
o It can be assumed that the basic set of genes that
control these processes are the same, making findings
applicable to other species
8
ARABIDOPSIS TRANSFORMATION BY FLORAL DIPPING
Dipping
Arabidopsis
plants are grown
in pots until they
start flowering.
Around 10/pot.
Plants are dipped
In Agrobacterium
Culture plus
sucrose Plus
surfactant for Up
to 3 minutes
Seeds
germinate done
medium
containing
selectable agent
e.g. Kanamycin
Plants grown for
a Few more
weeks to Allow
seed
development.
Seeds collected.
9
EXPRESSION IN DIPPED PLANTS OF MARKERS FOR
PLANT GENE EXPRESSION PRESENT ON THE
T-DNA
10
Agrobacterium enters the developing flower and the T-DNA
is introduced into the developing female gametophyte, and
transmitted Through the ovule to the next generation.
SUMMARY
 Arabidopsis is a useful model plant
 Simple genome
 Easy maintenance and space-efficient
 Applicable similarities with other plants
 It has a potential to help increase food production
quantity and quality to feed a growing world
population
 Due to these overall applications makes Arabidopsis
as a model plant organism 11
12

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Why arabidopsis is a model plant

  • 1. WHY ARABIDOPSIS THALIANA USED AS A MODEL PLANT ??? MBB 601: Advances in plant molecular biology: 3+0 Presented By Mr. Ekatpure Sachin Department of Plant Biotechnology 1
  • 2. INTRODUCTION  Arabidopsis thaliana also known as thale-cress or mouse-ear cress or arabidopsis  It is a member of Brassicaceae family  Grows as weed in many parts of world  For a complex multicellular eukaryote  Except in role of model genetic organism it has no economic use  Number of variants were found called as ecotypes  That are vary in size, shape, physiological characters and DNA sequence 2
  • 3. INTRODUCTION CONT…  Identified in the 16th century  1st mutant was reported in the year of 1873 by Alexander Braun, describing a double flower phenotype  In the year of 1980th the first genetic map of Arabidopsis was prepared  Now a days A. thaliana mostly used in the study of genome structure, gene regulation, development and evolution of plants  Also it provides the important basic information about plant genetics, that is applied to other economically important plants 3
  • 4. Advantages 4  Small genome  Small plant size  Short generation time i.e. 6 weeks  Each plant can produce the 10,000 to 40,000 seeds  It has ability to grow in the laboratory  Many variants are available  Ability to self fertilization and out cross
  • 5. GENOME 5  It having five pairs of chromosomes (2n=10)  found 125 million base pairs of DNA  18 % genes were common with human genome  Average gene size is about 200 bp  1st plant has done Complete genome were sequenced in year of 2000
  • 6. CONTRIBUTION IN THE GENETICS  A. thaliana majorly involved in the study of-  Plant Genome Organization  Gene Regulation  Genetics of plant development  Genetic of flowering 6
  • 7. STATS 7  Taxonomy: Flowering plant  Angiosperm  Size: 10 to 30 cm  Habitat: Meadows/ Grassland  Anatomy: Roots, flowers, Simple Leaves, One Primary shoot
  • 8. MAKING KNOCKOUT PLANTS o It is easily susceptible to Agrobacterium which contain Ti plasmids, the vehicles for T-DNA insertion o Easy to establish many knockout lines within short amount of time o Basic life processes similar to those of more complex crop plants such as corn, soybean, and wheat o It can be assumed that the basic set of genes that control these processes are the same, making findings applicable to other species 8
  • 9. ARABIDOPSIS TRANSFORMATION BY FLORAL DIPPING Dipping Arabidopsis plants are grown in pots until they start flowering. Around 10/pot. Plants are dipped In Agrobacterium Culture plus sucrose Plus surfactant for Up to 3 minutes Seeds germinate done medium containing selectable agent e.g. Kanamycin Plants grown for a Few more weeks to Allow seed development. Seeds collected. 9
  • 10. EXPRESSION IN DIPPED PLANTS OF MARKERS FOR PLANT GENE EXPRESSION PRESENT ON THE T-DNA 10 Agrobacterium enters the developing flower and the T-DNA is introduced into the developing female gametophyte, and transmitted Through the ovule to the next generation.
  • 11. SUMMARY  Arabidopsis is a useful model plant  Simple genome  Easy maintenance and space-efficient  Applicable similarities with other plants  It has a potential to help increase food production quantity and quality to feed a growing world population  Due to these overall applications makes Arabidopsis as a model plant organism 11
  • 12. 12