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Pentose Phosphate Pathway
Pentose Phosphate Pathway
 Other names:
Phosphogluconate Pathway
Hexose Monophosphate Shunt
Direct oxidative pathway
 In this pathway by oxidation and decarboxylation
6-C sugar (glucose-6-P), produces 5-C sugar
(ribulose-5-P) and other monosaccharides
Glucose-6-phosphate Dehydrogenase catalyzes
oxidation at C1 of glucose-6-phosphate, to a
carboxylic acid, in ester linkage (lactone)
NADP+
is reduced (electron addition)
H O
OH
H
OHH
OH
CH2OPO3
2−
H
H
OH H O
OH
H
OHH
OH
CH2OPO3
2−
H
O
23
4
5
6
1
1
6
5
4
3 2
C
HC
CH
HC
HC
CH2OPO3
2−
O O−
OH
HO
OH
OH
NADPH+H+
NADP+ H2O H+
1
2
3
4
5
6
Glucose-6-phosphate
Dehydrogenase
6-Phospho-
glucono-
lactonase
glucose-6-phosphate 6-phoshogluconolactone 6-phosphogluconate
6-Phosphogluconolactonase catalyzes the hydrolysis of the
ester linkage, resulting in ring opening; The product is 6-
phosphogluconate
Although ring opening occurs in the absence of a catalyst, 6-
Phosphogluconolactonase speeds up the reaction, decreasing
the lifetime of the highly reactive and potentially toxic, 6-
phosphogluconolactone
H O
OH
H
OHH
OH
CH2OPO3
2−
H
H
OH H O
OH
H
OHH
OH
CH2OPO3
2−
H
O
23
4
5
6
1
1
6
5
4
3 2
C
HC
CH
HC
HC
CH2OPO3
2−
O O−
OH
HO
OH
OH
NADPH+H+
NADP+ H2O H+
1
2
3
4
5
6
Glucose-6-phosphate
Dehydrogenase
6-Phospho-
glucono-
lactonase
glucose-6-phosphate 6-phoshogluconolactone 6-phosphogluconate
Phosphogluconate Dehydrogenase catalyzes
oxidative decarboxylation of 6-phosphogluconate, to
yield the 5-C ketose, ribulose-5-phosphate
The OH at C3 (C2 of product) is oxidized to a ketone
This promotes loss of the carboxyl at C1 as CO2
NADP+
serves as oxidant
C
HC
CH
HC
HC
CH2OPO3
2−
O O−
OH
HO
OH
OH
1
2
3
4
5
6
CH2OH
C
HC
HC
CH2OPO3
2−
OH
OH
1
2
3
4
5
O
NADP+
NADPH + H+
CO2
Phosphogluconate
Dehydrogenase
6-phosphogluconate ribulose-5-phosphate
Epimerase inter-
converts stereoisomers
ribulose-5-P and
xylulose-5-P.
Isomerase converts the
ketose ribulose-5-P to
the aldose ribose-5-P.
Both reactions are
reversible.
C
C
C
CH2OPO3
2−
O
OHH
OHH
CH2OH
C
C
C
CH2OPO3
2−
O
HHO
OHH
CH2OH
C
C
C
CH2OPO3
2−
OH
OHH
OHH
HC O
H
ribulose-5-
phosphate
xylulose-5-
phosphate
ribose-5-
phosphate
Epimerase
Isomerase
 Transketolase transfers a 2-C fragment from
xylulose-5-P to either ribose-5-P or erythrose-4-P
C
C
C
CH2OPO3
2−
O
HHO
OHH
CH2OH
C
C
C
CH2OPO3
2−
OH
OHH
OHH
HC O
H C
C
C
CH2OPO3
2−
OH
OHH
OHH
C H
H
HC
C
CH2OPO3
2−
O
OHH
C
CH2OH
O
HO
+ +
xylulose- ribose- glyceraldehyde- sedoheptulose-
5-phosphate 5-phosphate 3-phosphate 7-phosphate
Transketolase
 Transfer of the 2-C fragment to the 5-C aldose
ribose-5-phosphate yields sedoheptulose-7-phosphate
 Transfer of the 2-C fragment instead to the 4-C aldose
erythrose-4-phosphate yields fructose-6-phosphate
C
C
C
CH2OPO3
2−
O
HHO
OHH
CH2OH
C
C
C
CH2OPO3
2−
OH
OHH
OHH
HC O
H C
C
C
CH2OPO3
2−
OH
OHH
OHH
C H
H
HC
C
CH2OPO3
2−
O
OHH
C
CH2OH
O
HO
+ +
xylulose- ribose- glyceraldehyde- sedoheptulose-
5-phosphate 5-phosphate 3-phosphate 7-phosphate
Transketolase
Transaldolase catalyzes transfer of a 3-C
dihydroxyacetone moiety, from sedoheptulose-7-phosphate
to glyceraldehyde-3-phosphate
CH2OH
C
CH
HC
HC
HC
H2C
OH
OH
OPO3
2−
OH
HO
O
HC
HC
HC
H2C
O
OH
OPO3
2−
OH
HC
HC
H2C
O
OPO3
2−
OH
H2C
C
CH
HC
HC
H2C
OH
OPO3
2−
OH
OH
HO
O
sedoheptulose- glyceraldehyde- erythrose- fructose-
7-phosphate 3-phosphate 4-phosphate 6-phosphate
Transaldolase
+ +
Transaldolase catalyzes transfer of a 3-C
dihydroxyacetone moiety, from sedoheptulose-7-phosphate
to glyceraldehyde-3-phosphate
CH2OH
C
CH
HC
HC
HC
H2C
OH
OH
OPO3
2−
OH
HO
O
HC
HC
HC
H2C
O
OH
OPO3
2−
OH
HC
HC
H2C
O
OPO3
2−
OH
H2C
C
CH
HC
HC
H2C
OH
OPO3
2−
OH
OH
HO
O
sedoheptulose- glyceraldehyde- erythrose- fructose-
7-phosphate 3-phosphate 4-phosphate 6-phosphate
Transaldolase
+ +

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Pentose Phosphate Pathway---Sir Khalid (Biochem)

  • 2. Pentose Phosphate Pathway  Other names: Phosphogluconate Pathway Hexose Monophosphate Shunt Direct oxidative pathway  In this pathway by oxidation and decarboxylation 6-C sugar (glucose-6-P), produces 5-C sugar (ribulose-5-P) and other monosaccharides
  • 3. Glucose-6-phosphate Dehydrogenase catalyzes oxidation at C1 of glucose-6-phosphate, to a carboxylic acid, in ester linkage (lactone) NADP+ is reduced (electron addition) H O OH H OHH OH CH2OPO3 2− H H OH H O OH H OHH OH CH2OPO3 2− H O 23 4 5 6 1 1 6 5 4 3 2 C HC CH HC HC CH2OPO3 2− O O− OH HO OH OH NADPH+H+ NADP+ H2O H+ 1 2 3 4 5 6 Glucose-6-phosphate Dehydrogenase 6-Phospho- glucono- lactonase glucose-6-phosphate 6-phoshogluconolactone 6-phosphogluconate
  • 4. 6-Phosphogluconolactonase catalyzes the hydrolysis of the ester linkage, resulting in ring opening; The product is 6- phosphogluconate Although ring opening occurs in the absence of a catalyst, 6- Phosphogluconolactonase speeds up the reaction, decreasing the lifetime of the highly reactive and potentially toxic, 6- phosphogluconolactone H O OH H OHH OH CH2OPO3 2− H H OH H O OH H OHH OH CH2OPO3 2− H O 23 4 5 6 1 1 6 5 4 3 2 C HC CH HC HC CH2OPO3 2− O O− OH HO OH OH NADPH+H+ NADP+ H2O H+ 1 2 3 4 5 6 Glucose-6-phosphate Dehydrogenase 6-Phospho- glucono- lactonase glucose-6-phosphate 6-phoshogluconolactone 6-phosphogluconate
  • 5. Phosphogluconate Dehydrogenase catalyzes oxidative decarboxylation of 6-phosphogluconate, to yield the 5-C ketose, ribulose-5-phosphate The OH at C3 (C2 of product) is oxidized to a ketone This promotes loss of the carboxyl at C1 as CO2 NADP+ serves as oxidant C HC CH HC HC CH2OPO3 2− O O− OH HO OH OH 1 2 3 4 5 6 CH2OH C HC HC CH2OPO3 2− OH OH 1 2 3 4 5 O NADP+ NADPH + H+ CO2 Phosphogluconate Dehydrogenase 6-phosphogluconate ribulose-5-phosphate
  • 6. Epimerase inter- converts stereoisomers ribulose-5-P and xylulose-5-P. Isomerase converts the ketose ribulose-5-P to the aldose ribose-5-P. Both reactions are reversible. C C C CH2OPO3 2− O OHH OHH CH2OH C C C CH2OPO3 2− O HHO OHH CH2OH C C C CH2OPO3 2− OH OHH OHH HC O H ribulose-5- phosphate xylulose-5- phosphate ribose-5- phosphate Epimerase Isomerase
  • 7.  Transketolase transfers a 2-C fragment from xylulose-5-P to either ribose-5-P or erythrose-4-P C C C CH2OPO3 2− O HHO OHH CH2OH C C C CH2OPO3 2− OH OHH OHH HC O H C C C CH2OPO3 2− OH OHH OHH C H H HC C CH2OPO3 2− O OHH C CH2OH O HO + + xylulose- ribose- glyceraldehyde- sedoheptulose- 5-phosphate 5-phosphate 3-phosphate 7-phosphate Transketolase
  • 8.  Transfer of the 2-C fragment to the 5-C aldose ribose-5-phosphate yields sedoheptulose-7-phosphate  Transfer of the 2-C fragment instead to the 4-C aldose erythrose-4-phosphate yields fructose-6-phosphate C C C CH2OPO3 2− O HHO OHH CH2OH C C C CH2OPO3 2− OH OHH OHH HC O H C C C CH2OPO3 2− OH OHH OHH C H H HC C CH2OPO3 2− O OHH C CH2OH O HO + + xylulose- ribose- glyceraldehyde- sedoheptulose- 5-phosphate 5-phosphate 3-phosphate 7-phosphate Transketolase
  • 9. Transaldolase catalyzes transfer of a 3-C dihydroxyacetone moiety, from sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate CH2OH C CH HC HC HC H2C OH OH OPO3 2− OH HO O HC HC HC H2C O OH OPO3 2− OH HC HC H2C O OPO3 2− OH H2C C CH HC HC H2C OH OPO3 2− OH OH HO O sedoheptulose- glyceraldehyde- erythrose- fructose- 7-phosphate 3-phosphate 4-phosphate 6-phosphate Transaldolase + +
  • 10. Transaldolase catalyzes transfer of a 3-C dihydroxyacetone moiety, from sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate CH2OH C CH HC HC HC H2C OH OH OPO3 2− OH HO O HC HC HC H2C O OH OPO3 2− OH HC HC H2C O OPO3 2− OH H2C C CH HC HC H2C OH OPO3 2− OH OH HO O sedoheptulose- glyceraldehyde- erythrose- fructose- 7-phosphate 3-phosphate 4-phosphate 6-phosphate Transaldolase + +