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The Biophysical Effects
           Of
      Heavy Water
     By Anthony Salvagno
History   Effects on Life   Effects on molecules
What is heavy water?




      hydrogen                            deuterium

                                                  ²H2O
Normal water - H2O                  Heavy water - D2O

Density 0.998 g/ml                  Density 1.101 g/ml

Freezing Point 0°C                  Freezing Point 3.8°C

Boiling Point 100°C                 Boiling Point 101.4°C

Viscosity 1.002                     Viscosity 1.247

pH 7.00                             pH 7.43
The Biophysical Effects of Heavy Water




        Lewis, GN. The biochemistry of water containing hydrogren isotope (1933).
“It is not inconceivable that heavy hydrogen,
which exists in small amounts in all natural
water, may actually be essential to some plants
or animals.”
                               Gilbert N. Lewis




                                Lewis, GN. The biology of heavy water (1934).
Heavy water-life science experimentation
                         (1933-1970)
Simple organisms        Plants                 Animals

  E. coli                 Tobacco                Flies

  Yeast                   Arabidopsis            Mice

  P. aeruginosa           Wheat                  Dogs

  Various pathogens       Peas                   Tadpoles

  Paramecium              Clover                 Planaria
  Spirogyra               Radish                 Fish
  Various algae           Kentucky Bluegrass     Quail
                                                 Humans?
Every experiment reported the same results:

1. Pure heavy water is toxic to most organisms

2. Heavy water at lower concentrations inhibits
             biological processes




   But no one explored Lewis’ hypothesis...
...until now
Helen Crumley et al. (1950)
33% D2O




Day 3    Day 7    Day 11
What’s the difference?




                         DI water: 0.0155% D2O
                         DDW: 0.0000% D2O
...popcorn break!
DI water: 0.0155% D2O
DDW: 0.0000% D2O
1% D2O: 1.0000% D2O
Tobacco Morphology




DDW         DI water       tap water
lots of seeds in DDW
Limitations with tobacco yield experiments with Arabidopsis thaliana


                  Why use Arabidopsis?

                 1. Everyone studies Arabidopsis.

                 2. Arabidopsis grows FAST!
Repeating Crumley with Arabidopsis
Root phenotypes in DDW
Arabidopsis growth after 7 weeks




DDW              10% D2O                 60% D2O
Arabidopsis growth in pure D2O?
Plants and animals cannot
survive in pure heavy water...




                        ...but simple organisms can!
Saccharomyces cerevisiae (baker’s yeast) growth in D2O

             2.5
                                                              99.9% D2O

                                                              80% D2O
             2.0
                                                              60% D2O
Absorbance




             1.5                                              40% D2O

                                                              20% D2O
             1.0
                                                              DI water


             0.5
                   0     1     2           3   4   5
                                   Hours
Yeast cellular morphology in D2O




  DI YPD             20% D2O YPD        40% D2O YPD
                                                       25um




60% D2O YPD          80% D2O YPD       99.9% D2O YPD
Yeast in DI water   Yeast in 99.9% D2O
Yeast in 99.9% D2O
Yeast colony morphology

                                                      250um




  DI YPD           20% D2O YPD          40% D2O YPD




60% D2O YPD        80% D2O YPD          99.9% D2O YPD
Escherichia coli exhibits even stranger behavior...
E. coli growth in D2O
             1.0
                                                           99.9% D2O

             0.8                                           60% D2O


                                                           30% D2O
Absorbance




             0.6

                                                           DDW
             0.4
                                                           DI

             0.2



             0.0
                   0   1   2     3    4    5     6     7
                                 Hours
E. coli adaptation to D2O
             3.0


             2.5
Absorbance




             2.0


             1.5


             1.0


             0.5
                   11                   25          39
                                      Days
Adapted E. coli growth in D2O

             3.0
                                                           Proj. WT in DI

             2.5                                           D2O cells in DDW

                                                           D2O cells in D2O
Absorbance




             2.0


             1.5


             1.0


             0.5
                   0   1    2     3     4    5    6
                                Hours
Adapted E. coli cellular morphology




Adapted cells in DI water             Adapted cells in D2O




Normal cells in DI water              Normal cells in D2O
Adapted E. coli cellular morphology




Normal cells in DI water                                    Adapted cells in D2O




Normal cells in D2O                                    Adapted cells in DI water
Summary of deuterium effects on life
1. New phenotypes found in very low deuterium enviornments:
     a. Root hairs in tobacco
     b. Earlier germination in tobacco
     c. Curly roots in arabidopsis
2. Optimal deuterium concentration above normal amounts
     a. Tobacco root growth
     b. Arabidopsis plant growth
3. D2O adaptation produces new phenotypes
     a. E. coli “brainy” colonies
     b. E. coli joining
     c. Faster growth
History   Effects on Life   Effects on molecules
Deuterium chemical effects

covalent bonding        hydrogen bonding        pH or pD?




    DOH
These chemical effects can be detected physically!


     mass spectroscopy              nuclear magnetic resonance
                                             (NMR)



            fourier transform     cavity ring-down
          infrared spectroscopy     spectroscopy
                 (FT-IR)              (CRDS)
...evidence of hydrogen-deuterium replacement!
                                       machine use provided by Dr. Krishna
                             assistance provided by Stephen Myers and Alex Haddad
HD exchange




                Why should we worry?


In low and high D environments, HD exchange/replacement
              can affect experimental results.
Growth in <99% D2O
To quantify HD replacement, use CRDS.




                                  picarro.com
Long-time HD exchange
You can also detect bond strength...




                                 ...indirectly.
Dynamic Light Scattering




Detector




Detector
8          Catalase Aggregation
                                 7

                                 6
Intensity (Millions of Counts)




                                 5
                                                                                        H2O
                                 4
                                                                                        D2O
                                 3

                                 2

                                 1


                                 30   40   50    60      70     80      90

                                                      Temp ˚C

                                                                     machine use provided by Dr. Osinski
                                                                     assistance provided by Kenji Doering
YPD deterioration in D2O



        DI water
                   D2O
Even DNA is affected by D2O...
The optical tweezers
Using optical tweezers to overstretch DNA




                               tweezer design and development by Pranav Rathi
Force (pN)
             DNA Length (nm)




Force (pN)
             DNA Length (nm)




Force (pN)
             DNA Length (nm)
Average DNA overstretch force

                                                  D2O
             75
                                                  H2O
                                                  Mean Force
                                                  Std Error
             70

                                                          67.6
Force (pN)




             65                                                  65.1




             60




             55
                              DNA tethers
Summary of deuterium effects on molecules

1. D2O stabilizes molecules.
     a. Better for single molecule and in-vitro studies
     b. It could be used for long term storage of biomolecules.

2. Good probe for solvent effects.
     a. Just changing the water affected DNA-DNA interations!

3. HD exchange/replacement:
    a. Important to pay attention in low D experiments.
    a. Good way to measure local atmospheric isotope ratios.
Future work

1. Low D2O concetration effects:
     -Deuterium use vs. tolerance
     -Lots of potential new discoveries

2. High D2O concentration effects:
     -Useful to study rare events

3. Solvent effects:
     -Under-utilized in studied of biomolecular interactions

4. HD replacement:
    a. Expand studies with CRDS.
Ackowledgements


Dr. Steven Koch                Dr. Abhaya Datye
 -and all of KochLab            -NSMS IGERT
Dr. Mary Ann Osley             Dr. Maggie Werner-Washburne
 -and the entire Osley Lab      -IMSD
Dr. Robert Olendorf            Dr. Krishna, Dr. Osinski, and
Dr. David Dunlap               Dr. Sharpe


                      Mom and Dad
                      my brother Jason
                      All my friends!
The Biophysical Effects of Heavy Water

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The Biophysical Effects of Heavy Water

  • 1. The Biophysical Effects Of Heavy Water By Anthony Salvagno
  • 2. History Effects on Life Effects on molecules
  • 3. What is heavy water? hydrogen deuterium ²H2O Normal water - H2O Heavy water - D2O Density 0.998 g/ml Density 1.101 g/ml Freezing Point 0°C Freezing Point 3.8°C Boiling Point 100°C Boiling Point 101.4°C Viscosity 1.002 Viscosity 1.247 pH 7.00 pH 7.43
  • 4. The Biophysical Effects of Heavy Water Lewis, GN. The biochemistry of water containing hydrogren isotope (1933).
  • 5. “It is not inconceivable that heavy hydrogen, which exists in small amounts in all natural water, may actually be essential to some plants or animals.” Gilbert N. Lewis Lewis, GN. The biology of heavy water (1934).
  • 6. Heavy water-life science experimentation (1933-1970) Simple organisms Plants Animals E. coli Tobacco Flies Yeast Arabidopsis Mice P. aeruginosa Wheat Dogs Various pathogens Peas Tadpoles Paramecium Clover Planaria Spirogyra Radish Fish Various algae Kentucky Bluegrass Quail Humans?
  • 7. Every experiment reported the same results: 1. Pure heavy water is toxic to most organisms 2. Heavy water at lower concentrations inhibits biological processes But no one explored Lewis’ hypothesis...
  • 9. Helen Crumley et al. (1950)
  • 10. 33% D2O Day 3 Day 7 Day 11
  • 11. What’s the difference? DI water: 0.0155% D2O DDW: 0.0000% D2O
  • 13. DI water: 0.0155% D2O DDW: 0.0000% D2O 1% D2O: 1.0000% D2O
  • 14. Tobacco Morphology DDW DI water tap water
  • 15. lots of seeds in DDW
  • 16. Limitations with tobacco yield experiments with Arabidopsis thaliana Why use Arabidopsis? 1. Everyone studies Arabidopsis. 2. Arabidopsis grows FAST!
  • 17. Repeating Crumley with Arabidopsis
  • 19. Arabidopsis growth after 7 weeks DDW 10% D2O 60% D2O
  • 21. Plants and animals cannot survive in pure heavy water... ...but simple organisms can!
  • 22. Saccharomyces cerevisiae (baker’s yeast) growth in D2O 2.5 99.9% D2O 80% D2O 2.0 60% D2O Absorbance 1.5 40% D2O 20% D2O 1.0 DI water 0.5 0 1 2 3 4 5 Hours
  • 23. Yeast cellular morphology in D2O DI YPD 20% D2O YPD 40% D2O YPD 25um 60% D2O YPD 80% D2O YPD 99.9% D2O YPD
  • 24. Yeast in DI water Yeast in 99.9% D2O
  • 26. Yeast colony morphology 250um DI YPD 20% D2O YPD 40% D2O YPD 60% D2O YPD 80% D2O YPD 99.9% D2O YPD
  • 27. Escherichia coli exhibits even stranger behavior...
  • 28. E. coli growth in D2O 1.0 99.9% D2O 0.8 60% D2O 30% D2O Absorbance 0.6 DDW 0.4 DI 0.2 0.0 0 1 2 3 4 5 6 7 Hours
  • 29. E. coli adaptation to D2O 3.0 2.5 Absorbance 2.0 1.5 1.0 0.5 11 25 39 Days
  • 30. Adapted E. coli growth in D2O 3.0 Proj. WT in DI 2.5 D2O cells in DDW D2O cells in D2O Absorbance 2.0 1.5 1.0 0.5 0 1 2 3 4 5 6 Hours
  • 31. Adapted E. coli cellular morphology Adapted cells in DI water Adapted cells in D2O Normal cells in DI water Normal cells in D2O
  • 32. Adapted E. coli cellular morphology Normal cells in DI water Adapted cells in D2O Normal cells in D2O Adapted cells in DI water
  • 33. Summary of deuterium effects on life 1. New phenotypes found in very low deuterium enviornments: a. Root hairs in tobacco b. Earlier germination in tobacco c. Curly roots in arabidopsis 2. Optimal deuterium concentration above normal amounts a. Tobacco root growth b. Arabidopsis plant growth 3. D2O adaptation produces new phenotypes a. E. coli “brainy” colonies b. E. coli joining c. Faster growth
  • 34. History Effects on Life Effects on molecules
  • 35. Deuterium chemical effects covalent bonding hydrogen bonding pH or pD? DOH
  • 36. These chemical effects can be detected physically! mass spectroscopy nuclear magnetic resonance (NMR) fourier transform cavity ring-down infrared spectroscopy spectroscopy (FT-IR) (CRDS)
  • 37. ...evidence of hydrogen-deuterium replacement! machine use provided by Dr. Krishna assistance provided by Stephen Myers and Alex Haddad
  • 38. HD exchange Why should we worry? In low and high D environments, HD exchange/replacement can affect experimental results.
  • 40. To quantify HD replacement, use CRDS. picarro.com
  • 42. You can also detect bond strength... ...indirectly.
  • 44. 8 Catalase Aggregation 7 6 Intensity (Millions of Counts) 5 H2O 4 D2O 3 2 1 30 40 50 60 70 80 90 Temp ˚C machine use provided by Dr. Osinski assistance provided by Kenji Doering
  • 45. YPD deterioration in D2O DI water D2O
  • 46. Even DNA is affected by D2O...
  • 48. Using optical tweezers to overstretch DNA tweezer design and development by Pranav Rathi
  • 49. Force (pN) DNA Length (nm) Force (pN) DNA Length (nm) Force (pN) DNA Length (nm)
  • 50. Average DNA overstretch force D2O 75 H2O Mean Force Std Error 70 67.6 Force (pN) 65 65.1 60 55 DNA tethers
  • 51. Summary of deuterium effects on molecules 1. D2O stabilizes molecules. a. Better for single molecule and in-vitro studies b. It could be used for long term storage of biomolecules. 2. Good probe for solvent effects. a. Just changing the water affected DNA-DNA interations! 3. HD exchange/replacement: a. Important to pay attention in low D experiments. a. Good way to measure local atmospheric isotope ratios.
  • 52. Future work 1. Low D2O concetration effects: -Deuterium use vs. tolerance -Lots of potential new discoveries 2. High D2O concentration effects: -Useful to study rare events 3. Solvent effects: -Under-utilized in studied of biomolecular interactions 4. HD replacement: a. Expand studies with CRDS.
  • 53. Ackowledgements Dr. Steven Koch Dr. Abhaya Datye -and all of KochLab -NSMS IGERT Dr. Mary Ann Osley Dr. Maggie Werner-Washburne -and the entire Osley Lab -IMSD Dr. Robert Olendorf Dr. Krishna, Dr. Osinski, and Dr. David Dunlap Dr. Sharpe Mom and Dad my brother Jason All my friends!