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Cytoscape Web Gary Bader http://www.baderlab.org July 10 2010 – ISMB, BOSC An interactive, customizable web-based network browser http://cytoscapeweb.cytoscape.org
Cytoscape Web ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],Cytoscape Concepts
Web Component Network View (Flash/ActionScript) API (JavaScript) Client-side only. No server-side technology required
Customization JavaScript only!
[object Object],[object Object],[object Object],[object Object],[object Object],Interactivity
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Other Features
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Performance
[object Object],Performance Tested on an Apple laptop computer with 2 GHz dual core CPU and 4 GB RAM
Some Clients
http://www.genemania.org
http://wodaklab.org/iRefWeb/
http://www.pathguide.org
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],How to Start cytoscapeweb-discuss @googlegroups.com
Acknowledgements Cytoscape Consortium Funding Lead developers: Christian Tannus Lopes, Max Franz www.GeneMANIA.org Quaid Morris, Rashad Badrawi, Ovi Comes, Sylva Donaldson, Farzana Kazi, Jason Montojo, Harold Rodriguez, Khalid Zuberi

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Bader bosc2010 cytoweb

Notes de l'éditeur

  1. Created as a result of the need for a visualization interface for the GeneMANIA project at the University of Toronto. The idea was to create a simple version of Cytoscape for the Web, not as a complete user application, but as an independent component that could be reused by other developers.
  2. Despite using different technologies, Cytoscape Web follows most of the Cytoscape concepts.
  3. Client-side only! No server-side technology required or enforced.
  4. 800 nodes and 1600 edges
  5. GeneMANIA
  6. iRefWeb
  7. Pathguide