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Wilson Tadeu Lopes da Silva1, Débora Marcondes Bastos Pereira Milori1, 
Ladislau Martin-Neto1,2, Adolpho José Posadas1,3, Aline Segnini1,3, Roberto 
1 
Quiroz3 
1- Brazilian Agricultural Research Corporation (Embrapa) – Embrapa Agricultural 
Instrumentation Center – São Carlos/SP, Brazil. 
2- Virtual Laboratories of Embrapa abroad – Labex – Beltsville/MD, USA 
3- International Potato Center (CIP) – Lima, Peru. 
Rome – Italy 
13 July 2010
2 
• Does the determination of Carbon content in the 
soil, satisfactory for analysis of balance of carbon 
in agriculture areas? 
• Do the actual laboratory analyses adequate in 
terms of practice, representativity, costs, etc.?
3 
Our proposal 
•To use Fluorescence parameters to produce a 
quick indicator for changes in structure of SOM; 
•Measure this indicator using whole soil; 
We built an apparatus to evaluate the feasibility of using laser-induced 
fluorescence spectroscopy (LIFS) for whole soil analysis
4 
Portable Laser-Induced Fluorescence 
Spectroscope 
Optical Bunddle 
Profile 
Excitation Fibers 
Emission Fiber 
Laser 
Miniature spectrometer 
Filter 
Optical bunddle 
Lap-top 
soil 
Miniature spectrometer 
Segnine, A.; Milori, D.; et al. Spectroscopic assessment of soil organic matter in wetlands from the high Andes, 
accepted in Soil Science Society of America Journal
5 
Portable LIFS system
6 
Portable LIFS system
HLIF = Humification Index 
7 
Laser-Induced Fluorescence Spectroscopy 
400 450 500 550 600 650 700 
3 
2 
1 
0 
NATURAL SOIL 
HEATED SOIL (600°C) 
Intensity (a.u.) 
λ (nm) 
HLIF = Area 
C 
Milori et al.. Soil Science Society of America Journal 70 (1): 57-63 JAN-FEB 2006
8 
Laser-Induced Fluorescence Spectroscopy 
3.0 
2.5 
2.0 
1.5 
1.0 
0.5 
R=0.85; P<0.0001 
0.05 0.10 0.15 0.20 0.25 0.30 
HLIF ( Whole Soil) 
A4/A1 (HA in solution) 
Milori et al.. Soil Science Society of America Journal 70 (1): 57-63 Jan-Feb 2006 
Segnini, A.; Milori, D.; et al. Soil Science Society of America Journal. Acepted to be published.
9 
Sample preparation 
soil samples from 
experimental area 
manual cleaning, 
and after the 
samples are sieved 
15 ton of 
pressure 
3 pellets of 
each sample 
(1 g) 
Cost equipment ~ US$ 30.000,00 
Cost / Analysis : US$ 0.50
10 
Portable LIFS system 
Advantages 
- Faster and cleaner process; 
- Low cost; 
- It is possible a large scale measurements; 
- Allow analyses of SOM near its natural state; 
- Contribution of Humin is taking into account in the analyses; 
- To allow evaluation of changes in SOM according to soil management. 
Disadvantages 
- It is not a selective technique. It is difficult to identify structures; 
- Quenching effect due to interaction with metal can occur; 
- For organic soils it is necessary to take care with Inner Filter Effect.
To quantify soil carbon in a clean and agile 
way using methods economically viable 
11 
¾¾Determination by Near Infrared Spectroscopy (NIRS) 
¾¾Texture (Sand, Clay, and Silt) 
¾¾Soil organic matter 
¾¾Microbial activity 
¾¾Determination by Laser Induced Breakdown 
Spectroscopy (LIBS)
12 
What is LIBS? 
¾¾Laser Induced Breakdown Spectroscopy (LIBS) is an emerging 
analytical technique based on atomic and ionic emission of elemental 
sample constituents. 
¾¾During the LIBS analytical process the sample is irradiated by a 
highly energetic laser pulse and absorbs this energy. The high 
temperature of ablated material generates a small plasma plume. As 
result of the temperature, the ablated material breaks down into 
excited ionic and atomic species. 
sample 
Pulsed laser 
emission 
Plasma
13 
What is LIBS? 
¾¾During the plasma cooling, the excited species return to their ground 
state emitting electromagnetic radiation in characteristic wavelengths. 
¾¾In this sense, the analysis of sample emission spectra gives a qualitative 
view of sample elemental composition.
14 
Soil pellet 
coin
15 
Laser 
1064 nm 
LIBS apparatus 
Focuses lens 
Plasma 
Sample 
Fiber optics 
spectrometer 
Computer 
Use of Artificial Neural Network (ANN)
16 
Embrapa systems 
Bench Portable 
Spectrometers manufactured by Ocean Optics 
model LIBS2500 
spectral range: 188-980 nm 
Resolution: 0.1 nm 
Laser manufactured by Quantel 
model Big Sky Laser Ultra50 
single-pulse energy 50 mJ 
pulse duration 8ns 
Delay time: 3 μs 
Spectrometers manufactured by StellarNet Inc 
model LIBS2500 
spectral range: 190-1000 nm 
Resolution: 0.2 nm 
Laser manufactured by Kigre Inc. 
model MK-367 
single-pulse energy 20 mJ 
pulse duration 4ns 
Delay time: 2 μs
17 
Typical soil emission –– C region 
350 
300 
250 
200 
150 
100 
50 
0 
C 
Al 
190 192 194 196 198 200 
Intensidade (u.a.) 
Comprimento de Onda (nm) 
wavelength (nm) 
Da Silva, R, Milori, D. et al.. Spectrochimica Acta. Part B, Atomic Spectroscopy. , v.63, p.1221 - 1224, 2008.
18 
LIBS + Artificial Neural Network for 
Carbon analysis 
0,0 0,1 0,2 0,3 0,4 0,5 0,6 0,7 0,8 0,9 1,0 1,1 
1,1 
1,0 
0,9 
0,8 
0,7 
0,6 
0,5 
0,4 
0,3 
0,2 
0,1 
0,0 
C(%) LIBS/MLP 
C (%) TOC 
R=0.93 
LOD: 0,3% 
C reference 
concentration 
(%) 
C predicted 
concentration 
(%) 
Absolute 
Error 
0.51 0.43 (±0.04) -0.08 
0.79 0.94 (±0.08) 0.15 
0.62 0.78 (±0.15) 0.16 
0.48 0.56 (±0.09) 0.08 
0.65 0.76 (±0.10) 0.11 
0.36 0.44 (±0.07) 0.08 
0.45 0.51 (±0.07) 0.06 
0.72 0.76 (±0.07) 0.04
19 
LIBS + ANN 
0 1 2 3 4 5 6 7 8 9 
250 
200 
150 
100 
50 
0 
Ba (mg kg-1) 
Validation Samples 
ICP OES 
LIBS 
0 1 2 3 4 5 6 7 8 9 10 
100 
80 
60 
40 
20 
0 
Co (mg kg-1) 
Validation samples 
ICP OES 
LIBS 
0 1 2 3 4 5 6 7 8 9 10 
250 
200 
150 
100 
50 
0 
Cu (mg kg-1) 
Validation samples 
ICP OES 
LIBS 
Co 
0 1 2 3 4 5 6 7 8 9 10 
2000 
1800 
1600 
1400 
1200 
1000 
800 
600 
400 
200 
0 
Mn (mg kg-1) 
Validation samples 
ICP OES 
LIBS 
Ba 
Cu Mn
20 
Sample preparation 
soil samples from 
experimental area 
manual cleaning, 
and after the 
samples are sieved 
15 ton of 
pressure 
1 pellet of 
each sample 
(1 g) 
Cost equipment ~ US$ 50.000,00 
Cost / Analysis : US$ 0.50
21 
Soils & Humic Substances 
Leader: Dr. Ladislau Martin-Neto 
Research team: Débora Milori 
Silvio Crestana 
Wilson T. L. da Silva 
Marcelo L. Simões 
Carlos Vaz 
Luiz A. Colnago 
Ednaldo Ferreira 
Adolfo Posadas 
Roberto Quiroz 
Pos-doc: Edilene C. Ferreira 
Aline Segnini 
Students 
Cleber Hilário dos Santos 
Bruno H. Martins 
Lilian F. de Almeida 
Lívia Favoretto 
Mariani Mussi 
Camila Carvalho 
André Venâncio 
Marcelo Cardinalli 
Mariana Russo 
Marina França-Silva 
Bruna D.L. Pinto 
Thais Oahshi 
Lilian F. de Almeida 
Tatiana M. Ferrarezi 
Partnerships:
22 
Acknowledgements
23 
www.cnpdia.embrapa.br 
wilson@cnpdia.embrapa.br

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W T Lopes da Silva soil carbon analysis methods july 2010

  • 1. Wilson Tadeu Lopes da Silva1, Débora Marcondes Bastos Pereira Milori1, Ladislau Martin-Neto1,2, Adolpho José Posadas1,3, Aline Segnini1,3, Roberto 1 Quiroz3 1- Brazilian Agricultural Research Corporation (Embrapa) – Embrapa Agricultural Instrumentation Center – São Carlos/SP, Brazil. 2- Virtual Laboratories of Embrapa abroad – Labex – Beltsville/MD, USA 3- International Potato Center (CIP) – Lima, Peru. Rome – Italy 13 July 2010
  • 2. 2 • Does the determination of Carbon content in the soil, satisfactory for analysis of balance of carbon in agriculture areas? • Do the actual laboratory analyses adequate in terms of practice, representativity, costs, etc.?
  • 3. 3 Our proposal •To use Fluorescence parameters to produce a quick indicator for changes in structure of SOM; •Measure this indicator using whole soil; We built an apparatus to evaluate the feasibility of using laser-induced fluorescence spectroscopy (LIFS) for whole soil analysis
  • 4. 4 Portable Laser-Induced Fluorescence Spectroscope Optical Bunddle Profile Excitation Fibers Emission Fiber Laser Miniature spectrometer Filter Optical bunddle Lap-top soil Miniature spectrometer Segnine, A.; Milori, D.; et al. Spectroscopic assessment of soil organic matter in wetlands from the high Andes, accepted in Soil Science Society of America Journal
  • 7. HLIF = Humification Index 7 Laser-Induced Fluorescence Spectroscopy 400 450 500 550 600 650 700 3 2 1 0 NATURAL SOIL HEATED SOIL (600°C) Intensity (a.u.) λ (nm) HLIF = Area C Milori et al.. Soil Science Society of America Journal 70 (1): 57-63 JAN-FEB 2006
  • 8. 8 Laser-Induced Fluorescence Spectroscopy 3.0 2.5 2.0 1.5 1.0 0.5 R=0.85; P<0.0001 0.05 0.10 0.15 0.20 0.25 0.30 HLIF ( Whole Soil) A4/A1 (HA in solution) Milori et al.. Soil Science Society of America Journal 70 (1): 57-63 Jan-Feb 2006 Segnini, A.; Milori, D.; et al. Soil Science Society of America Journal. Acepted to be published.
  • 9. 9 Sample preparation soil samples from experimental area manual cleaning, and after the samples are sieved 15 ton of pressure 3 pellets of each sample (1 g) Cost equipment ~ US$ 30.000,00 Cost / Analysis : US$ 0.50
  • 10. 10 Portable LIFS system Advantages - Faster and cleaner process; - Low cost; - It is possible a large scale measurements; - Allow analyses of SOM near its natural state; - Contribution of Humin is taking into account in the analyses; - To allow evaluation of changes in SOM according to soil management. Disadvantages - It is not a selective technique. It is difficult to identify structures; - Quenching effect due to interaction with metal can occur; - For organic soils it is necessary to take care with Inner Filter Effect.
  • 11. To quantify soil carbon in a clean and agile way using methods economically viable 11 ¾¾Determination by Near Infrared Spectroscopy (NIRS) ¾¾Texture (Sand, Clay, and Silt) ¾¾Soil organic matter ¾¾Microbial activity ¾¾Determination by Laser Induced Breakdown Spectroscopy (LIBS)
  • 12. 12 What is LIBS? ¾¾Laser Induced Breakdown Spectroscopy (LIBS) is an emerging analytical technique based on atomic and ionic emission of elemental sample constituents. ¾¾During the LIBS analytical process the sample is irradiated by a highly energetic laser pulse and absorbs this energy. The high temperature of ablated material generates a small plasma plume. As result of the temperature, the ablated material breaks down into excited ionic and atomic species. sample Pulsed laser emission Plasma
  • 13. 13 What is LIBS? ¾¾During the plasma cooling, the excited species return to their ground state emitting electromagnetic radiation in characteristic wavelengths. ¾¾In this sense, the analysis of sample emission spectra gives a qualitative view of sample elemental composition.
  • 15. 15 Laser 1064 nm LIBS apparatus Focuses lens Plasma Sample Fiber optics spectrometer Computer Use of Artificial Neural Network (ANN)
  • 16. 16 Embrapa systems Bench Portable Spectrometers manufactured by Ocean Optics model LIBS2500 spectral range: 188-980 nm Resolution: 0.1 nm Laser manufactured by Quantel model Big Sky Laser Ultra50 single-pulse energy 50 mJ pulse duration 8ns Delay time: 3 μs Spectrometers manufactured by StellarNet Inc model LIBS2500 spectral range: 190-1000 nm Resolution: 0.2 nm Laser manufactured by Kigre Inc. model MK-367 single-pulse energy 20 mJ pulse duration 4ns Delay time: 2 μs
  • 17. 17 Typical soil emission –– C region 350 300 250 200 150 100 50 0 C Al 190 192 194 196 198 200 Intensidade (u.a.) Comprimento de Onda (nm) wavelength (nm) Da Silva, R, Milori, D. et al.. Spectrochimica Acta. Part B, Atomic Spectroscopy. , v.63, p.1221 - 1224, 2008.
  • 18. 18 LIBS + Artificial Neural Network for Carbon analysis 0,0 0,1 0,2 0,3 0,4 0,5 0,6 0,7 0,8 0,9 1,0 1,1 1,1 1,0 0,9 0,8 0,7 0,6 0,5 0,4 0,3 0,2 0,1 0,0 C(%) LIBS/MLP C (%) TOC R=0.93 LOD: 0,3% C reference concentration (%) C predicted concentration (%) Absolute Error 0.51 0.43 (±0.04) -0.08 0.79 0.94 (±0.08) 0.15 0.62 0.78 (±0.15) 0.16 0.48 0.56 (±0.09) 0.08 0.65 0.76 (±0.10) 0.11 0.36 0.44 (±0.07) 0.08 0.45 0.51 (±0.07) 0.06 0.72 0.76 (±0.07) 0.04
  • 19. 19 LIBS + ANN 0 1 2 3 4 5 6 7 8 9 250 200 150 100 50 0 Ba (mg kg-1) Validation Samples ICP OES LIBS 0 1 2 3 4 5 6 7 8 9 10 100 80 60 40 20 0 Co (mg kg-1) Validation samples ICP OES LIBS 0 1 2 3 4 5 6 7 8 9 10 250 200 150 100 50 0 Cu (mg kg-1) Validation samples ICP OES LIBS Co 0 1 2 3 4 5 6 7 8 9 10 2000 1800 1600 1400 1200 1000 800 600 400 200 0 Mn (mg kg-1) Validation samples ICP OES LIBS Ba Cu Mn
  • 20. 20 Sample preparation soil samples from experimental area manual cleaning, and after the samples are sieved 15 ton of pressure 1 pellet of each sample (1 g) Cost equipment ~ US$ 50.000,00 Cost / Analysis : US$ 0.50
  • 21. 21 Soils & Humic Substances Leader: Dr. Ladislau Martin-Neto Research team: Débora Milori Silvio Crestana Wilson T. L. da Silva Marcelo L. Simões Carlos Vaz Luiz A. Colnago Ednaldo Ferreira Adolfo Posadas Roberto Quiroz Pos-doc: Edilene C. Ferreira Aline Segnini Students Cleber Hilário dos Santos Bruno H. Martins Lilian F. de Almeida Lívia Favoretto Mariani Mussi Camila Carvalho André Venâncio Marcelo Cardinalli Mariana Russo Marina França-Silva Bruna D.L. Pinto Thais Oahshi Lilian F. de Almeida Tatiana M. Ferrarezi Partnerships: