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BioHackathon 2010 Intro

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Brad Chapman

BioHackathon 2010 Intro http://hackathon3.dbcls.jp/

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Brad Chapman Affiliation Department of Molecular Biology Massachusetts General Hospital, Boston, US Projects Biopython: http://biopython.org Contacts chapmanb@50mail.com http://bcbio.wordpress.com http://friendfeed.com/chapmanb http://www.linkedin.com/pub/ brad-chapman/3/300/8ba
Biology Many organisms (Human, Mouse, Arabidopsis, C elegans) Next generation sequencing Comparative genomics Synthetic biology
Computation Open source software (Python) Web presentation (Galaxy) Visualization (R) Data availability (REST)
Hackathon Learn Existing RDF data resources Approaches for storing/querying data Implement Python libraries to simplify data access Tools to ease providing RDF content

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BioHackathon 2010 Intro

  • 1. Brad Chapman Affiliation Department of Molecular Biology Massachusetts General Hospital, Boston, US Projects Biopython: http://biopython.org Contacts chapmanb@50mail.com http://bcbio.wordpress.com http://friendfeed.com/chapmanb http://www.linkedin.com/pub/ brad-chapman/3/300/8ba
  • 2. Biology Many organisms (Human, Mouse, Arabidopsis, C elegans) Next generation sequencing Comparative genomics Synthetic biology
  • 3. Computation Open source software (Python) Web presentation (Galaxy) Visualization (R) Data availability (REST)
  • 4. Hackathon Learn Existing RDF data resources Approaches for storing/querying data Implement Python libraries to simplify data access Tools to ease providing RDF content