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Novel Functional Delta-Radiomics for Predicting Overall Survival in
Lung Cancer Radiotherapy using Cardiac FDG-PET Uptake
INTRODUCTION
• Traditional methods of evaluating cardiotoxicity rely on cardiac
radiation doses and do not incorporate functional imaging.
• Cardiac functional imaging can improve the ability to provide
early prediction for clinical outcomes for lung cancer patients
undergoing radiotherapy.
• FDG-based PET/CT imaging is routinely obtained for staging and
disease assessment after treatment.
• Although FDG PET/CT scans are typically used to evaluate the
tumor, studies have shown that the PET cardiac signal is predictive
of clinical outcomes.
CONCLUSIONS
• This is the first study to evaluate functional cardiac delta radiomic features from standard PET/CT scans.
• The study found that delta radiomic features can be used to predict overall survival (OS) in lung cancer patients.
• The study had a good predictive AUC for OS.
• If validated, this work could provide automated methods to provide functional cardiac information for clinical outcome prediction in
lung cancer patients
RESULTS
METHOD
Dataset
• The study included 109 patients, with data from two
cohorts.
o ACRIN 6668 (N=70)
o An investigator-initiated lung cancer trial (N=39)
• The data were divided into 80%/20% training/test set
Delineation
• The heart was manually delineated
• Auto-segmentation was also performed to evaluate
feature robustness.
o CARINA INTContour
Feature extraction
• 200 radiomics features were extracted from each image
o In-house developed radiomics workflow (N=93,
https://github.com/taznux/radiomics-tools/)
o PyRadiomics (N=107)
ACKNOWLEDGEMENTS
This project was partially supported by the Sidney Kimmel
Cancer Center Support Grant(P30CA056036).
AIM
Our study aimed to develop novel functional cardiac delta
radiomics using pre and post-treatment FDG PET/CT scans to
predict for overall survival (OS).
• The study noted that patients could have significantly
variable FDG distribution in the heart as observed on pre
and post-treatment PET/CT scans (Figure 1).
Feature reduction and selection
• Total: 1600 features
• After Wilcoxon feature reduction: 1530 features
• Hierarchical clustering : 221 features
• RFE: the top 20 features were selected (Table 1).
Model building and evaluation
• A gradient boosting machine (GBM) was selected as the
best model.
o 10-fold CV AUC: 0.83±0.07
• The model was able to accurately predict overall survival.
o Training set AUC: 0.91
o Test set AUC: 0.87
• The four clinically relevant features identified by the study
were all related to the distribution of FDG in the heart.
o Pre-CT Maximum, Post-CT Minimum, Delta-CT GLRM Run
Variance, Delta-PET GLRM Run Entropy
CONTACT INFORMATION
Wookjin Choi, PhD (wookjin.choi@Jefferson.edu)
W. Choi and Y. Vinogradskiy
Department of Radiation Oncology, Sidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA,
Rank Image Type Name 𝝆
1 Pre-CT First order Maximum 0.14
2 Post-CT First order Minimum 0.06
3 Delta-CT GLRLM Run Variance 0.21
4 Delta-PET GLRLM Run Entropy 0.15
5 Delta-PET Shape Elongation 0.15
6 Pre-PET GLRLM Short Run High Gray Level Emphasis 0.09
7 Delta-CT GLSZM Gray Level Non Uniformity Normalized 0.01
8 Pre-PET First order Median 0.08
9 Post-CT First order Total Energy 0.01
10 Pre-CT NGTDM Coarseness 0.17
Table 1. Top 10 features selected by recursive feature elimination and their correlation (ρ) with survival.
Delta-Radiomics calculation
• The change between pre- and post-PET/CT.
o Difference Δ𝐹𝑖
= 𝐹𝑝𝑜𝑠𝑡
𝑖
− 𝐹𝑝𝑟𝑒
𝑖
o Relative difference 𝑅 Δ𝐹𝑖
=
Δ𝐹𝑖
𝐹𝑝𝑟𝑒
𝑖
𝐹: the feature vector, 𝑖: the index of the feature vector
o A total of 1600 features were selected
(2 delta sets × 4 images × 200 features).
Feature reduction
• Wilcoxon test with Bonferroni correction (adj P<0.05)
o To remove unpredictable features
• Hierarchical clustering (Spearman correlation ρ>0.7)
o To remove collinearity between the remaining features
Feature selection
• Recursive Feature Elimination (RFE) over Decision Tree
Classification
o 10-fold cross-validation was then used to select the final
feature set for training a model.
Model building
• AutoML framework (TPOT, tree-based pipeline
optimization tool) was used to find a best model with a
best feature set and optimized hyper parameters
o 100 populations and 10 generations - 10,000 pipeline
configurations were evaluated to select the best model.
o The pipelines were constructed using preprocessors (Binarizer,
ICA, PCA, Normalizer, etc.) and classifiers (Naïve Bayes,
Decision Tree, XGB, logistic regression, etc.).
0.83
0.6
0.8
1
1 2 3 4 5 6 7 8 9 10
Figure 2: Prediction performance (AUC) by the number of features, the best AUC of
0.83 was obtained with 4 features.
Figure 1: Example of patients with variable pre and post-treatment cardiac PET/CT signal.
Vinogradskiy Y, Diot Q, Jones B, et al. Evaluating Positron Emission Tomography-Based Functional Imaging Changes in the Heart After
Chemo-Radiation for Patients With Lung Cancer. International Journal of Radiation Oncology* Biology* Physics. 2020;106(5):1063-1070.

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Novel Functional Delta-Radiomics for Predicting Overall Survival in Lung Cancer Radiotherapy using Cardiac FDG-PET Uptake

  • 1. Novel Functional Delta-Radiomics for Predicting Overall Survival in Lung Cancer Radiotherapy using Cardiac FDG-PET Uptake INTRODUCTION • Traditional methods of evaluating cardiotoxicity rely on cardiac radiation doses and do not incorporate functional imaging. • Cardiac functional imaging can improve the ability to provide early prediction for clinical outcomes for lung cancer patients undergoing radiotherapy. • FDG-based PET/CT imaging is routinely obtained for staging and disease assessment after treatment. • Although FDG PET/CT scans are typically used to evaluate the tumor, studies have shown that the PET cardiac signal is predictive of clinical outcomes. CONCLUSIONS • This is the first study to evaluate functional cardiac delta radiomic features from standard PET/CT scans. • The study found that delta radiomic features can be used to predict overall survival (OS) in lung cancer patients. • The study had a good predictive AUC for OS. • If validated, this work could provide automated methods to provide functional cardiac information for clinical outcome prediction in lung cancer patients RESULTS METHOD Dataset • The study included 109 patients, with data from two cohorts. o ACRIN 6668 (N=70) o An investigator-initiated lung cancer trial (N=39) • The data were divided into 80%/20% training/test set Delineation • The heart was manually delineated • Auto-segmentation was also performed to evaluate feature robustness. o CARINA INTContour Feature extraction • 200 radiomics features were extracted from each image o In-house developed radiomics workflow (N=93, https://github.com/taznux/radiomics-tools/) o PyRadiomics (N=107) ACKNOWLEDGEMENTS This project was partially supported by the Sidney Kimmel Cancer Center Support Grant(P30CA056036). AIM Our study aimed to develop novel functional cardiac delta radiomics using pre and post-treatment FDG PET/CT scans to predict for overall survival (OS). • The study noted that patients could have significantly variable FDG distribution in the heart as observed on pre and post-treatment PET/CT scans (Figure 1). Feature reduction and selection • Total: 1600 features • After Wilcoxon feature reduction: 1530 features • Hierarchical clustering : 221 features • RFE: the top 20 features were selected (Table 1). Model building and evaluation • A gradient boosting machine (GBM) was selected as the best model. o 10-fold CV AUC: 0.83±0.07 • The model was able to accurately predict overall survival. o Training set AUC: 0.91 o Test set AUC: 0.87 • The four clinically relevant features identified by the study were all related to the distribution of FDG in the heart. o Pre-CT Maximum, Post-CT Minimum, Delta-CT GLRM Run Variance, Delta-PET GLRM Run Entropy CONTACT INFORMATION Wookjin Choi, PhD (wookjin.choi@Jefferson.edu) W. Choi and Y. Vinogradskiy Department of Radiation Oncology, Sidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA, Rank Image Type Name 𝝆 1 Pre-CT First order Maximum 0.14 2 Post-CT First order Minimum 0.06 3 Delta-CT GLRLM Run Variance 0.21 4 Delta-PET GLRLM Run Entropy 0.15 5 Delta-PET Shape Elongation 0.15 6 Pre-PET GLRLM Short Run High Gray Level Emphasis 0.09 7 Delta-CT GLSZM Gray Level Non Uniformity Normalized 0.01 8 Pre-PET First order Median 0.08 9 Post-CT First order Total Energy 0.01 10 Pre-CT NGTDM Coarseness 0.17 Table 1. Top 10 features selected by recursive feature elimination and their correlation (ρ) with survival. Delta-Radiomics calculation • The change between pre- and post-PET/CT. o Difference Δ𝐹𝑖 = 𝐹𝑝𝑜𝑠𝑡 𝑖 − 𝐹𝑝𝑟𝑒 𝑖 o Relative difference 𝑅 Δ𝐹𝑖 = Δ𝐹𝑖 𝐹𝑝𝑟𝑒 𝑖 𝐹: the feature vector, 𝑖: the index of the feature vector o A total of 1600 features were selected (2 delta sets × 4 images × 200 features). Feature reduction • Wilcoxon test with Bonferroni correction (adj P<0.05) o To remove unpredictable features • Hierarchical clustering (Spearman correlation ρ>0.7) o To remove collinearity between the remaining features Feature selection • Recursive Feature Elimination (RFE) over Decision Tree Classification o 10-fold cross-validation was then used to select the final feature set for training a model. Model building • AutoML framework (TPOT, tree-based pipeline optimization tool) was used to find a best model with a best feature set and optimized hyper parameters o 100 populations and 10 generations - 10,000 pipeline configurations were evaluated to select the best model. o The pipelines were constructed using preprocessors (Binarizer, ICA, PCA, Normalizer, etc.) and classifiers (Naïve Bayes, Decision Tree, XGB, logistic regression, etc.). 0.83 0.6 0.8 1 1 2 3 4 5 6 7 8 9 10 Figure 2: Prediction performance (AUC) by the number of features, the best AUC of 0.83 was obtained with 4 features. Figure 1: Example of patients with variable pre and post-treatment cardiac PET/CT signal. Vinogradskiy Y, Diot Q, Jones B, et al. Evaluating Positron Emission Tomography-Based Functional Imaging Changes in the Heart After Chemo-Radiation for Patients With Lung Cancer. International Journal of Radiation Oncology* Biology* Physics. 2020;106(5):1063-1070.