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Infectious Disease Epidemiology
Dr. Jayaramachandran S
Assistant Professor
Department of Community Medicine
Importance of Infectious Epidemiology
Epidemiological knowledge
Epidemiological activities (Disease Reporting,
measurement of morbidity, mortality)
Prevention & control of disease
23/04/18 Infectious Disease Epidemiology - Dr. JRC 2
Agent
“A substance, living or non living, or a force, the excessive
presence or relative lack of which may initiate a disease process.”
Eg:
• Biological agent - Bacteria, virus, fungi etc.
• Nutrient – Carbohydrate, protein, fat etc
• Physical agent – Heat, cold, radiation etc
• Chemical agent – Uric acid, bilirubin etc
23/04/18 Infectious Disease Epidemiology - Dr. JRC 3
Infection
Infection is defined as entry and development or multiplication
of an infectious agent in the body of man or other animals.
Transmission of infection is defined as spread of infectious agent
through the environment or to another person from the reservoir and
source.
423/04/18 Infectious Disease Epidemiology - Dr. JRC
Contamination
“Presence of an infectious agent on a body surface or substances
like clothes, beddings, toys, surgical instruments or dressings including
water, milk and food.”
Eg: Water contamination
23/04/18 Infectious Disease Epidemiology - Dr. JRC 5
Infestation
“The lodgment, development and reproduction of arthropods on
the surface of the body of person or animal.”
Eg. Scabies, Pediculosis
23/04/18 Infectious Disease Epidemiology - Dr. JRC 6
Host
“Person or animal, including birds and arthropods that affords
lodgment to an infectious agent under natural conditions.”
• Obligatory host: Man in measles
• Definitive host: malaria cycle in mosquito
• Intermediate host: malaria cycle in man
23/04/18 Infectious Disease Epidemiology - Dr. JRC 7
Contagious disease
Disease that is transmitted through contact.
Eg: Scabies, Pediculosis, Leprosy, STD.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 8
Communicable disease
“An illness due to a specific infectious agent or its toxic product
capable of being directly or indirectly transmitted from man to man, or
animal to animal or animal to man or from environment to man or
animal.”
Eg: Rabies, TB, Leprosy, Diarrhoeal diseases.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 9
Epidemic
“The unusual occurrence in a community or region of cases of an
illness or other health related events clearly in excess of expected
occurrence.”
Eg: Gastro Enteritis, Hepatitis A.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 10
Endemic
“It refers to the constant presence of a disease or infectious
agent within a given geographical area or population group without
importation from outside.” Eg: Hepatitis - A, Typhoid fever.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 11
Endemic
Hyper endemic:
The disease is constantly present in the region and affects all the
age groups. Eg: Diarrheal diseases
Holo endemic:
The rate of infection is high in children and less in adults. Eg:
Malaria
23/04/18 Infectious Disease Epidemiology - Dr. JRC 12
Sporadic
“Cases occur irregularly, haphazardly from time to time and
generally infrequently.” Sporadic means scattered about.
Eg: Rabies, Tetanus, Herpes zoster, Meningococcal meningitis etc.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 13
Pandemic
“An epidemic affecting a large proportion of the population,
occurring over a wide geographical area such as nation, a continent or
world.”
Eg: Influenza, Cholera, HIV.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 14
Zoonosis
“An infection or infectious disease transmitted under natural
conditions from vertebrate animals to man.”
Eg: Rabies, Plague, Anthrax, Brucellosis, Salmonellosis.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 15
Zoonosis
• Anthropozonosis:
Infections transmitted from vertebrate animal to man.
Eg: Rabies, Plague, Anthrax, KFD.
• Zooanthroponoses:
Infections transmitted from man to vertebrate animals
Eg. Bovine tuberculosis
23/04/18 Infectious Disease Epidemiology - Dr. JRC 16
Nosocomial infection
“An infection originating in a patient while in a hospital or other
health care facility.”
Eg: Wound infection, UTI
23/04/18 Infectious Disease Epidemiology - Dr. JRC 17
Opportunistic infection
“Infection by an organism that takes the opportunity provided by
a defect in host defense and cause disease.”
Eg: Candidiasis, Cryptococcal meningitis in AIDS patients.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 18
Iatrogenic disease
“Any adverse consequences resulting from a physician’s
professional activity or from the professional activity of other health
personnel.”
Eg:
• Anaphylactic reaction to any antibiotics or immunoglobulin.
• Acquiring HIV infection through injection or blood transfusion.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 19
Notifiable diseases
A disease that by statutory requirements, must be reported to
the public health authority in the pertinent jurisdiction when the
diagnosis is made.
Eg: Recent addition to the list of notifiable disease is Tuberculosis
2023/04/18 Infectious Disease Epidemiology - Dr. JRC
Elimination
“Interruption of transmission of disease in a given geographical
area or region.”
Eg. Elimination of Poliomyelitis.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 21
Eradication
“Termination of all transmission of infection by extermination of
the infectious agent.”
Termination of an infection from the whole world, so that
disease will no longer occur in the world.
Eg: Small pox is the only disease that has been eradicated.
Current candidates for eradication are polio, measles
23/04/18 Infectious Disease Epidemiology - Dr. JRC 22
Summary
• Definitions in Epidemiology is important for reporting, planning and
implementation of disease prevention and control programme.
• Every medical students should know these definitions for the future
use.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 23
Dynamics of disease transmission
“Our relationship with infectious pathogen is a part of an evolutionary drama”
- Joshua Lederberg
23/04/18 Infectious Disease Epidemiology - Dr. JRC 24
Source or reservoir
23/04/18 Infectious Disease Epidemiology - Dr. JRC 25
Introduction
Dynamics of disease transmission is the term mainly applicable
for communicable diseases.
• Communicable disease :
Communicable disease is defined as an illness due to a specific
infectious agent or its toxic products capable of being directly or
indirectly transmitted from man to man, animal to animal, or from
environment ( through air, dust, soil, water, food, etc) to man or animal.
2623/04/18 Infectious Disease Epidemiology - Dr. JRC
Transmission dynamics
27
Source or
reservoir
Modes of
transmission
Susceptible
host
23/04/18 Infectious Disease Epidemiology - Dr. JRC
Source of infection
Source of infection is defined as the person, animal, substance or
object from which infectious agent passes or disseminates.
Eg : Soil ---- Source of infection for Hook worm infestation
Sputum -- Source of infection for Tuberculosis
2823/04/18 Infectious Disease Epidemiology - Dr. JRC
Reservoir of infection
Is defined as any person, animal, arthropod, plant, soil, or
substance (or combination of these) in which the infectious agent lives
& multiplies on which it depends primarily for survival & where it
reproduces itself in such a manner that it can be transmitted to the
susceptible host
E g : Man – Tuberculosis, HIV
Dogs – Rabies
Rodents – Plague
2923/04/18 Infectious Disease Epidemiology - Dr. JRC
Reservoirs & Sources
Disease Reservoir Source
Tuberculosis Man Sputum
HIV / AIDS Man Body secretions, fluids
Malaria Man / Mosquito Infected blood
Rabies Dog / other animals Saliva
Measles Man Droplets
JE Pig & Birds Infected mosquitoes
Cholera Man Unsafe water & food
Typhoid Man Unsafe water and food
3023/04/18 Infectious Disease Epidemiology - Dr. JRC
Difference between source and reservoir
Source of infection is an immediate source which may or may not
be a part of reservoir
E g : Hook worm infestation
Source ---- soil
Reservoir ---- Man
3123/04/18 Infectious Disease Epidemiology - Dr. JRC
Classification of reservoirs
Reservoir
Human Animal
Non – living
things
23/04/18 Infectious Disease Epidemiology - Dr. JRC 32
Homologous reservoir
Is one where another member of the same species acts as a
victim
Eg : Man is a principal reservoir for some enteric pathogens like V.
cholera, Tuberculosis, Measles
23/04/18 Infectious Disease Epidemiology - Dr. JRC 33
Heterologous reservoir
Is applied when infection is derived from reservoir other than
man
Eg : Rabies
23/04/18 Infectious Disease Epidemiology - Dr. JRC 34
Human reservoir
Case
Clinical illness
Subclinical cases
Latent infection
Carrier
Type
Duration
Portal of Exit
23/04/18 Infectious Disease Epidemiology - Dr. JRC 35
Human reservoir – Case
Case is defined as a person in a population or study group,
identified to be having a particular disease, health disorder or condition
under investigation.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 36
Human reservoir – Case
• Criteria to identify a case are
1. Clinical features
2. Biochemical tests
3. Laboratory investigations
• Broadly presence of infection may be
1. Clinical
2. Sub clinical
3. Latent
23/04/18 Infectious Disease Epidemiology - Dr. JRC 37
Human reservoir – Case – Clinical illness
• Clinical cases may be
Mild / Moderate / Severe
Typical / Atypical
• Epidemiologically mild cases are more important than moderate or
severe cases
• As mild cases are ambulating so they spread infection more than
severe cases which have reduced mobility and usually confined to bed
23/04/18 Infectious Disease Epidemiology - Dr. JRC 38
Human reservoir – Case – Subclinical cases
• They are also referred to as in-apparent, covert, missed, abortive
cases
• The infectious agent multiplies in the host but does not manifest itself
by signs and symptoms
• Thus the persons who are not sick [ unbeknown to themselves &
others] contribute more to the infectious disease transmission
• They represent the submerged portion of iceberg they do not come
under any statistics
23/04/18 Infectious Disease Epidemiology - Dr. JRC 39
Human reservoir – Case – Subclinical cases
These cases can only be detected in laboratories by
1. Recovery of organism : Blood culture ---- Staphylococci
2. Antibody response : Anti Hbs Ag antibodies -- Hepatitis B
3. Biochemical test : Acid phosphatase Tuberculosis
4. Skin sensitivity test : Monteux test ---- Tuberculosis
Casoni’s test ---- Hydatid cyst
23/04/18 Infectious Disease Epidemiology - Dr. JRC 40
Human reservoir – Case – Subclinical cases
Proportion of individuals with asymptomatic / sub clinical cases
determines the pathogenicity of the infectious agent.
• Examples of sub clinical cases are Rubella, Hepatitis A / B,
Poliomyelitis, Influenza, Diphtheria
23/04/18 Infectious Disease Epidemiology - Dr. JRC 41
Human reservoir – Case – Latent Infection
In latent infection the host does not shed the infectious agent,
which lies dormant within the host without symptoms (and often
without demonstrable presence in blood, tissues or bodily secretions of
the host).
Eg: Varicella zoster disease
• Primary case: The first case of a communicable disease introduced
into the population unit being studied. Eg : 1st case of measles in a
village.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 42
Human reservoir – Case – Latent Infection
• Index case:
First case of a communicable disease which comes to attention
of an investigator. Eg : 1st case of measles coming to the PHC
• Secondary case:
These are the cases developing from contact with primary case.
Eg : Classmate of first child developing the measles
23/04/18 Infectious Disease Epidemiology - Dr. JRC 43
Human reservoir – Carriers
Carrier is defined any infected person or animal that harbors a
specific infectious agent in absence of any discernible clinical disease
and serves as a potential source of infection for others.
• Factors responsible for production of carriers are Inadequate
treatment & Immune response elicited by host
• Epidemiological importance: They escape recognition, They live
normal life among population or community, They readily infect the
susceptible individuals for a long period of time under favorable
conditions.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 44
Carriers – Classification
Type
Incubatory
Convalescent
Healthy
Duration
Temporary
Permanent
Portal of exit
Urinary
Intestinal
Respiratory
Others
23/04/18 Infectious Disease Epidemiology - Dr. JRC 45
Human reservoir – Carriers – By type
• Incubatory carriers :
Incubatory carriers those who shed the infectious disease during
the incubation period of the disease. That is they are capable of
infecting others before the onset of illness. Eg : Measles, mumps,
pertussis, diphtheria
• Convalescent carriers:
That is those who continue to shed the disease agent during the
period of convalescence. Here the clinical recovery doesn’t co inside
with bacteriological recovery. Eg : Typhoid – 6 to 8 weeks after recovery
23/04/18 Infectious Disease Epidemiology - Dr. JRC 46
Human reservoir – Carriers – By type
• Healthy carriers:
They are the victims of sub clinical infection who developed
carrier state without suffering from overt disease, but are nevertheless
shedding the disease agent. Eg : Typhoid, cholera, meningococcal
meningitis
“A person who’s infection remains subclinical may or may not act
as a carrier” Eg : Polio, Tuberculosis.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 47
Human reservoir – Carriers – Duration
• Temporary carrier: Eg: Mumps, cholera, Polio
They spread infectious agent for a limited period of time, they
include
• Incubatory carriers
• Convalescent carriers
• Healthy carriers
• Permanent carrier:
Is one who excretes the infectious agent over a longer period of
time. Eg : Typhoid, Malaria, Hepatitis B & A.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 48
Human reservoir – Carriers
• Longer the carrier state greater the risk to the community
• Carriers may excrete infectious agent intermittently or continuously
• Duration of carrier state varies with disease
Eg : Typhoid, Hepatitis --- several years
Pseudo carriers (Carriers of avirulent organism) --- Carriers of
nonpathogenic Mycobacteria
23/04/18 Infectious Disease Epidemiology - Dr. JRC 49
Human reservoir – Carriers – Portal of exit
Portal of exit Example
Urinary Typhoid
Intestinal Amoebiasis
Respiratory Tuberculosis
Nasal Diphtheria
23/04/18 Infectious Disease Epidemiology - Dr. JRC 50
Animal Reservoir
• Zoonosis:
An infection or infectious disease transmissible under natural
conditions from vertebrate hosts to man.
There are about 100 zoonosis which are transmissible to man
Eg : Rabies --- Dogs
Anthrax --- Cattle
Influenza --- Pigs, chicks
23/04/18 Infectious Disease Epidemiology - Dr. JRC 51
Animal Reservoir – Amplifying host
Is one in which enormous multiplication of the infectious agent
takes place, without the overt clinical disease.
Eg : Pigs JE
Pigeons Chlamydia
Wild birds Mosquito born febrile illness
There is evidence that genetic recombination between human &
animal viruses might produce new strain of viruses
Eg : Influenza --- Antigenic shift , Antigenic drift
23/04/18 Infectious Disease Epidemiology - Dr. JRC 52
Soil
Soil can harbor infection that can cause
• Tetanus
• Coccidioidomycosis
• Mycetoma
23/04/18 Infectious Disease Epidemiology - Dr. JRC 53
Modes of Transmission
23/04/18 Infectious Disease Epidemiology - Dr. JRC 54
Modes of transmission
Direct
• Direct contact
• Droplet infection
• Contact with soil
• Inoculation – skin , mucosa
• Trans placental / vertical
Indirect
• Vehicle born
• Vector born
• Air born
• Fomites
• Unclean hands and fingers
23/04/18 Infectious Disease Epidemiology - Dr. JRC 55
Direct transmission – Direct contact
This implies an immediate transfer of infectious agent from
reservoir or source to the susceptible host. Eg: Touch – Leprosy,
Scabies, Kissing – Infectious mononucleosis. Sexual intercourse – HIV,
Syphilis.
• The infection may be transmitted from skin to skin, skin to mucosa,
mucosa to mucosa of a same or another person
• Direct contact ensures reduced time required for the infectious agent
to survive in the external environment
• Larger infective dose
23/04/18 Infectious Disease Epidemiology - Dr. JRC 56
Direct transmission – Droplet infection
Direct projection of droplets or saliva , nasopharyngeal
secretions during coughing, talking, singing, sneezing, spitting, talking
to the surrounding atmosphere
They impinge largely over conjunctiva, respiratory mucosa or skin
of close contacts. These droplets which contain millions of organisms
are inhaled by the surrounding susceptible hosts and acquire infection
Eg : Diphtheria, measles, whooshing cough, TB
23/04/18 Infectious Disease Epidemiology - Dr. JRC 57
Direct transmission – Soil
Infectious agent in the soil
Direct exposure of susceptible host
Organisms penetrate the skin
Infection is acquired
Soil acts as a source of infection for hookworm, tetanus mycosis.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 58
Direct transmission – Inoculation into skin / mucosa
Eg : Rabies the organisms in the saliva of dog and are directly
inoculated into the skin/mucosa. Other examples are Hepatitis B, HIV
23/04/18 Infectious Disease Epidemiology - Dr. JRC 59
Direct transmission – Transplacental / Vertical
From mother to fetus.
Eg : Toxoplasmosis, Rubella, Cytomegalovirus, Herpes simplex,
Varicella. Some nonliving things like alcohol, thalidomide. This can
occur through placenta, or during labour
23/04/18 Infectious Disease Epidemiology - Dr. JRC 60
Indirect transmission
Transfer of infectious agent from source or reservoir to
susceptible host in agency of other factors.
5F’s : Flies, fingers, fomites, food, fluid
• Essential requirements for indirect transmission - Capability to survive
in external environment and retain pathogenicity and virulence
• It depends on Characteristics of agent, The inanimate object,
Environmental factors, Resistance to drugs
23/04/18 Infectious Disease Epidemiology - Dr. JRC 61
Indirect transmission – Vehicle borne
Vehicle borne disease transmission implies transmission of
infectious agent through the agency of water, food, blood, serum.
Water: Dead, decaying matter with faeces in soil mixes with rain water.
The infectious agent reaches river and water resources agent continues
to multiply in water reaching susceptible host.
• Man is the commonest contributor for water pollution
23/04/18 Infectious Disease Epidemiology - Dr. JRC 62
Indirect transmission – Vehicle borne
• Water borne diseases:
• Eg : Diarrheal diseases, Cholera, Hepatitis A,E, Bacillary dysentery,
Polio, typhoid
• Food born diseases:
• Include, food poisoning, intestinal parasites
• Staphylococcus : External contamination
• Salmonellosis : Pre existing poison
• Intestinal parasites – Ascaris lumbricoides
23/04/18 Infectious Disease Epidemiology - Dr. JRC 63
Epidemiological features – Vehicle borne diseases
• If the dose of contamination is heavy, outbreak may be explosive
• Cases are confined to those who are exposed to contaminated vehicle in
some infections
• When secondary cases occur primary cases are obscured
• The distance traveled by the infectious agent may be great Eg : Food
poisoning
• It is not always possible to isolate the infectious agent in the incriminated
vehicle. Eg : Typhoid
• When the vehicle is controlled or withdrawn the epidemic subsides
Eg : Cholera
• Common source of infection is often traceable
23/04/18 Infectious Disease Epidemiology - Dr. JRC 64
Indirect transmission – Vector borne
Vector is defined as an arthropod or any living carrier that
transports the infectious agent to the susceptible individual
• Classification : By vector :
•
23/04/18 Infectious Disease Epidemiology - Dr. JRC 65
Classification of Vector Borne : by Vector
Vertebrate type
• Mice
• Rodents
• Bats
Invertebrate type: Arthropod
• Diptera. : Flies / mosquitoes
• Siphonaptera: Fleas
• Orthoptera. : Cockroaches
• Anopleura. : Suckling lice
• Hemiptera. : Bugs
• Acarina. : Ticks
• Copepoda. : Cyclops
23/04/18 Infectious Disease Epidemiology - Dr. JRC 66
Classification of Vector Borne : by vector transmits disease
1. Biting – Malaria
2. Regurgitation – Plague
3. Scratching in of infective faeces – Enterobius
4. Contamination of host with body fluids by vectors
23/04/18 Infectious Disease Epidemiology - Dr. JRC 67
Classification of Vector Borne : by transmission chain
Man & non-
vertebrate Host
• Man – Arthropod
– Man : Malaria
• Man – snail –
man :
Schistosomiasis
Man – Another
vertebrate & Non-
vertebrate host
• Mammal –
Arthropod – Man
: Plague
• Bird – arthropod
– man
(encephalitis)
Man & two
intermediate hosts
• Man – Cyclopes –
Fish – Man : Fish
tapeworm
• Man – Snail –
Crab – Man :
Paragonimus
23/04/18 Infectious Disease Epidemiology - Dr. JRC 68
Classification of Vector Borne : By methods in which
vectors are involved in the transmission
A. Mechanical transmission:
Infectious agent is mechanically transported by crawling, or
flying arthropod with soiling of it’s feet or proboscis or by passing of
organism through it’s GI tract and passively excreted
• There is no development or multiplication of organism in the vector
Eg : Flies transmitting cholera, typhoid
23/04/18 Infectious Disease Epidemiology - Dr. JRC 69
Classification of Vector Borne : By methods in which
vectors are involved in the transmission
B. Biological transmission:
The infectious agent undergoing development or multiplication
or both in the vector & requires an incubation period before vector can
transmit the disease
• Extrinsic incubation period : This is the interval between entrance of
infectious agent in the vector and vector becoming infective.
i. Propogative type: The infectious agent merely multiplies but no
change in the form. Eg : Plague bacilli in rat flea
23/04/18 Infectious Disease Epidemiology - Dr. JRC 70
Classification of Vector Borne : By methods in which
vectors are involved in the transmission
ii. Cyclopropogative type:
In this form the agent changes its number and form thus there is
both multiplication and development. Eg : Malaria in Anopheles
mosquito
iii. Cyclodevelopmental type:
In this type the disease agent undergoes only development but
no multiplication. Eg : Wucheraria bancrofti microfilaria
23/04/18 Infectious Disease Epidemiology - Dr. JRC 71
Classification of Vector Borne : By methods in which
vectors are involved in the transmission
• Transovarial transmission:
When the infectious agent transmitted vertically from female
mosquito to it’s progeny. Eg: Aedes aegypti : In chikungunya
• Trans – stadial transmission:
Transmission of infectious agent from one stage of life cycle to
the next. Eg : Aedes aegypti : Yellow fever
Factors influencing ability of vectors to transmit the disease: Host feeding preference, Infectivity,
Susceptibility & Survival rate of vectors
23/04/18 Infectious Disease Epidemiology - Dr. JRC 72
Air borne transmission – Droplet nuclei
• Droplets ( 0.1 mm) : They evaporate in the environment & dry Droplet
nuclei ( 1-10mico m)
• Droplet nuclei may be formed from evaporation of the particles
coughed and sneezed
• They can also be generated by microbiological labs by variety of
atomizing devises
• These droplets remain suspended in air for long time sometimes
loosing / retaining infectivity
• Particles between 1-5microns liable to easily drawn into alveoli and retain there.
Eg: TB, Influenza
23/04/18 Infectious Disease Epidemiology - Dr. JRC 73
Air borne transmission – Smog & Dust
• Smog :
• Air borne spread of toxic air pollutants resulting in air pollution epidemic
• Dust:
• Larger particles expelled during coughing, sneezing.
• They settle down by their shear weight on the floor, carpets, furniture,
bedding, clothes.
• They become part of dust that is small particles of varying size arising from
soil.
• This dust contains variety of organisms. During act of sweeping, bed making
they are released. Inhalation of this dust leads to infection
23/04/18 Infectious Disease Epidemiology - Dr. JRC 74
Air borne transmission – Dust
• Dust may also be released from floor by wind (Fungal spores)
• Other infections are Pneumonia, TB, Psittacosis
• Dust may remain unsettled in the milk/ uncovered food this type of
infection causes nosocomial infection
23/04/18 Infectious Disease Epidemiology - Dr. JRC 75
Air borne transmission – Fomites borne
They are inanimate articles other than water & milk
contaminated by the infectious discharges from the patient capable of
harboring & transmitting infectious agent to healthy person.
• Eg : Clothes, towels, linen, handkerchiefs, cups
Diseases transmitted are diphtheria, Dysentery
23/04/18 Infectious Disease Epidemiology - Dr. JRC 76
Air borne transmission – Unclean hands and fingers
• Hands are most common medium through which the infectious
agents are transferred to food from skin, nose, bowel
• Transmission takes place directly from hand to mouth
• Eg : Staphylococcal, streptococcal infections, dysentery
• Unclean hands indicate poor personal hygiene
• Parenteral transmission : Occurs by common use of syringes, needles
among IV drug abusers. 2.2% HIV transmission is by parenteral root
23/04/18 Infectious Disease Epidemiology - Dr. JRC 77
Susceptible Host
23/04/18 Infectious Disease Epidemiology - Dr. JRC 78
Susceptible host
• Host: A person or animal including birds or arthropods that affords
subsistence or lodgment of an infectious agent under natural
conditions.
• Obligate host: Means the only host. Eg : Measles
• Definitive host: Hosts in which parasites attains maturation or passes
it’s sexual cycle
• Intermediate host: Host in which parasite in asexual or larval state
23/04/18 Infectious Disease Epidemiology - Dr. JRC 79
Host factors in communicable diseases
• Age : Extremes of age more
chances of infection
• Sex
• Marital status
• Nutritional status
• Immunization status:
• Literacy
• Occupation
• Behavioral factors
• Immune status
23/04/18 Infectious Disease Epidemiology - Dr. JRC 80
Successful parasitism
Four stages:
• Portal of entry
• Site of election
• Portal of exit
• Survival capacity in external environment
Incubation period: Defined as the time interval between the invasion of
infectious agent and appearance of first sign or symptom of disease
23/04/18 Infectious Disease Epidemiology - Dr. JRC 81
Median incubation period
Time required for 50 % of cases to occur following exposure
• Factors determining the incubation period
• Generation time of a particular pathogen
• Infective dose
• Portal of entry
• Individual susceptibility
• Infectious diseases communicable during incubation period are
Measles, chickenpox, whooping cough
23/04/18 Infectious Disease Epidemiology - Dr. JRC 82
Characteristics of incubation period
• Length of incubation period is characteristic of a particular disease
• There is a minimum period below which there is no illness can occur
• Varies from person to person for a same disease
• Different for different diseases
• In some diseases incubation period is very small ranging from few
hours to 2-3 days
• Medium ( 10days – 3weeks ) – Typhoid, chickenpox
• Long : Hepatitis B, leprosy sometimes unpredictable
23/04/18 Infectious Disease Epidemiology - Dr. JRC 83
Why to know about incubation period
• Tracing the source of infection
• Period of surveillance or Quarantine
• Immunization
• Identification of point source or propagated epidemic
• Prognosis
• Serial interval: The gap in time between primary and secondary cases is
known as serial interval
• By getting the series of information about primary & secondary cases we
can calculate incubation period
23/04/18 Infectious Disease Epidemiology - Dr. JRC 84
Generation time
• It is the interval of time between receipt of infection by the host and
maximum infectivity
• Generation time is roughly equal to incubation period
• Maximum communicability may precede or follow the incubation
period
• Incubation period can be calculated only when the infection
manifests with clinical features
• Generation time refers to transmission of infection whether clinical or
subclinical
23/04/18 Infectious Disease Epidemiology - Dr. JRC 85
Communicable period
Defined as time during which an infectious agent may be
transferred directly or indirectly from an infected person to another
person, from an infected animal to man or infected person to animals
including arthropods
• Communicability varies among different diseases
• Some diseases are more communicable during incubation period than
actual illness
• Communicability of some diseases can be reduced by early diagnosis
and treatment
23/04/18 Infectious Disease Epidemiology - Dr. JRC 86
Secondary attack rate
Number of exposed persons developing the disease within the
range of the incubation period following exposure to the primary case.
• The denominator may be restricted to only susceptible contacts.
• The primary case is excluded from both numerator and denominator.
87
SAR = × 100
No. of exposed persons developing the disease with in the range of the I.P
Total No. of exposed/susceptible contacts
23/04/18 Infectious Disease Epidemiology - Dr. JRC
Secondary attack rate
Limitations:
1. It is limited to infections with primary case infective only for a short
period of time
2. If the primary case is infective for a long period of time duration of
exposure is an important factor in determining extent of spread
23/04/18 Infectious Disease Epidemiology - Dr. JRC 88
Secondary attack rate
Limitations:
3. Another limitation is to identify susceptible. It is feasible only in
diseases like measles, chickenpox where history can be used as a
basis of identification but in majority of cases the susceptible
cannot be readily identified
4. SAR has limited role in diseases which have numerous subclinical
cases. Further spread can’t be measured without lab investigations
23/04/18 Infectious Disease Epidemiology - Dr. JRC 89
Secondary attack rate – Advantages
• Vaccinees and nonvaccinees from several families can be added to
determine the over all attack rates in the vaccinated and
unvaccinated populations provided the same definitions for cases and
immunization status are used
• SAR was initially developed to measure the spread of infection within
family, household or any close aggregate of persons who have had
contact with case
• It is useful to determine diseases of unknown etiology is
communicable or not
• Evaluation of control measures – Isolation, Immunization
23/04/18 Infectious Disease Epidemiology - Dr. JRC 90
Summary
• Communicable diseases are major public health problem since
ancient days but still remained as problems
• The source & reservoir of infection
• Carriers, sub clinical cases are keys for the spreading the diseases
• Pathogenesity, virulence, resistance are weapons for infectious agent
• Direct, indirect ways of transmission
• Vehicles, vectors , fomites ,Food, dust, droplets are routes of spread
23/04/18 Infectious Disease Epidemiology - Dr. JRC 91
Summary
• Host is the recipient of infectious agent and hence the victim
• Incubation period, generation time, serial interval, secondary attack
rate are tools for measurement and control
23/04/18 Infectious Disease Epidemiology - Dr. JRC 92
Disease prevention & control
23/04/18 Infectious Disease Epidemiology - Dr. JRC 93
Disease Prevention & Control
• Controlling the reservoir
• Early diagnosis & treatment
• Notification
• Epidemiological investigation
• Isolation
• Treatment
• Quarantine
23/04/18 Infectious Disease Epidemiology - Dr. JRC 94
Disease Prevention & Control
• Interruption of transmission
• Susceptible host
23/04/18 Infectious Disease Epidemiology - Dr. JRC 95
Controlling the Reservoir – Early Diagnosis &
Treatment
• Detection of cases and carriers helps in prompt treatment. Early
diagnosis is useful for
• Treatment of patients
• Epidemiological investigation – Eg.. To trace the source of infection from
known or index case to unknown or primary source of infection
• To study the time, place and person distribution
• For the institution of preventive & control measures
23/04/18 Infectious Disease Epidemiology - Dr. JRC 96
Controlling the Reservoir – Notification
• Notification to the local health authority to take up control measure
including the provision of medical care to the patients.
• The serious diseases which are serious menace to public health are included
in the list of notifiable diseases.
• Notification is done by the head of the family including lay people.
• Diagnosis is verified by the local health authority.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 97
Controlling the Reservoir – Notification
• As per international health regulations notifiable diseases are cholera,
plague and typhoid fever. Diseases under surveillance by WHO –
louse borne typhus fever, relapsing fever, paralytic polio, malaria, viral
influenza A, SARS etc…
23/04/18 Infectious Disease Epidemiology - Dr. JRC 98
Controlling the Reservoir – Investigation
• It covers the identification of source of infection and of the factors
influencing its spread in the community which include
• Geographical situation,
• Climatic condition,
• Social, cultural and behavioral pattern
• Character of reservoir, vectors, vehicles and the susceptible host population
23/04/18 Infectious Disease Epidemiology - Dr. JRC 99
Controlling the Reservoir – Isolation
• Separation for the period of communicability of infected persons, or
animals from others in such places and under such conditions as to
prevent or limit the direct or indirect transmission of the infectious
agent from those infected to susceptible or who may spread the
agent to others.
23/04/18 Infectious Disease Epidemiology - Dr. JRC 100
Disease Duration of isolation
Chicken pox Until all lesions crusted – 6 days after the onset of rashes
Measles From the onset of catarrhal stage to the 3rd day of rash
Mumps Until parotid swelling subsides
Hepatitis A 3 weeks
Controlling the Reservoir – Treatment
• Reduces the period of communicability,
• Cuts short the duration of illness and
• Prevents the development of secondary cases
23/04/18 Infectious Disease Epidemiology - Dr. JRC 101
Controlling the Reservoir – Quarantine
The limitation of freedom of movement of such well person or
domestic animals exposed to communicable disease for a period of
time not longer than the longest usual I.P. of the disease in such
manner as to prevent effective contact with those not so exposed.
Eg. All travelers from yellow fever endemic zone is placed on
quarantine for 6 days from date of leaving that area if vaccination
certificate is not available
• Quarantinable diseases are – Plague, Yellow fever, SARS
10223/04/18 Infectious Disease Epidemiology - Dr. JRC
Interruption of transmission
• It means the breaking the chain of transmission for eg..
• Water borne diseases like Typhoid, Dysentery, Cholera Hepatitis A can be
prevented by provision of safe drinking water supply.
• Food borne diseases can be prevented by improving food sanitation like clean
practices such as hand washing, adequate cooking, prompt refridegeration of
prepared foods and withdrawal of contaminated foods
• Prevention of vector borne diseases by adequate vector control measures.
10323/04/18 Infectious Disease Epidemiology - Dr. JRC
Susceptible host
• Susceptible host is protected by
• Active immunization
• Passive immunization
• Combined (active & passive) immunization
• Chemoprophylaxis
• Non specific measures
10423/04/18 Infectious Disease Epidemiology - Dr. JRC
Susceptible host – Active immunization
• UIP vaccination for all children as per national immunization schedule
10523/04/18 Infectious Disease Epidemiology - Dr. JRC
Susceptible host – Passive immunization
• Eg..
• Anti Rabies Serum for rabies
• Anti Tetanus Serum for Tetanus
10623/04/18 Infectious Disease Epidemiology - Dr. JRC
Susceptible host – Combined Immunization
• ARS + ARV for class 3 dog bite cases
• ATS + TT in the treatment of Tetanus
10723/04/18 Infectious Disease Epidemiology - Dr. JRC
Susceptible host – Chemoprophylaxis
• Administration of specific drugs for contacts for the prevention of the
disease before the occurrence of the disease, Eg..
• Diphtheria – Erythromycin and first dose of vaccine
• Cholera – Tetracycline for all household contacts
• Malaria – 300mg of Chloroquine base once a week, same day of each
week should be started one week before entering a malaria endemic
area, continue during the stay there and continued for one week after
returning back.
10823/04/18 Infectious Disease Epidemiology - Dr. JRC
Susceptible host – Nonspecific Measures
• Improvement in the quality of life
• Better housing
• Water supply
• Sanitation
• Nutrition
• Education - has brought down most of the communicable disease like Tb,
Cholera, child mortality.
10923/04/18 Infectious Disease Epidemiology - Dr. JRC
Any Questions?
23/04/18 Infectious Disease Epidemiology - Dr. JRC 110

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Infectious disease epidemiology

  • 1. Infectious Disease Epidemiology Dr. Jayaramachandran S Assistant Professor Department of Community Medicine
  • 2. Importance of Infectious Epidemiology Epidemiological knowledge Epidemiological activities (Disease Reporting, measurement of morbidity, mortality) Prevention & control of disease 23/04/18 Infectious Disease Epidemiology - Dr. JRC 2
  • 3. Agent “A substance, living or non living, or a force, the excessive presence or relative lack of which may initiate a disease process.” Eg: • Biological agent - Bacteria, virus, fungi etc. • Nutrient – Carbohydrate, protein, fat etc • Physical agent – Heat, cold, radiation etc • Chemical agent – Uric acid, bilirubin etc 23/04/18 Infectious Disease Epidemiology - Dr. JRC 3
  • 4. Infection Infection is defined as entry and development or multiplication of an infectious agent in the body of man or other animals. Transmission of infection is defined as spread of infectious agent through the environment or to another person from the reservoir and source. 423/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 5. Contamination “Presence of an infectious agent on a body surface or substances like clothes, beddings, toys, surgical instruments or dressings including water, milk and food.” Eg: Water contamination 23/04/18 Infectious Disease Epidemiology - Dr. JRC 5
  • 6. Infestation “The lodgment, development and reproduction of arthropods on the surface of the body of person or animal.” Eg. Scabies, Pediculosis 23/04/18 Infectious Disease Epidemiology - Dr. JRC 6
  • 7. Host “Person or animal, including birds and arthropods that affords lodgment to an infectious agent under natural conditions.” • Obligatory host: Man in measles • Definitive host: malaria cycle in mosquito • Intermediate host: malaria cycle in man 23/04/18 Infectious Disease Epidemiology - Dr. JRC 7
  • 8. Contagious disease Disease that is transmitted through contact. Eg: Scabies, Pediculosis, Leprosy, STD. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 8
  • 9. Communicable disease “An illness due to a specific infectious agent or its toxic product capable of being directly or indirectly transmitted from man to man, or animal to animal or animal to man or from environment to man or animal.” Eg: Rabies, TB, Leprosy, Diarrhoeal diseases. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 9
  • 10. Epidemic “The unusual occurrence in a community or region of cases of an illness or other health related events clearly in excess of expected occurrence.” Eg: Gastro Enteritis, Hepatitis A. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 10
  • 11. Endemic “It refers to the constant presence of a disease or infectious agent within a given geographical area or population group without importation from outside.” Eg: Hepatitis - A, Typhoid fever. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 11
  • 12. Endemic Hyper endemic: The disease is constantly present in the region and affects all the age groups. Eg: Diarrheal diseases Holo endemic: The rate of infection is high in children and less in adults. Eg: Malaria 23/04/18 Infectious Disease Epidemiology - Dr. JRC 12
  • 13. Sporadic “Cases occur irregularly, haphazardly from time to time and generally infrequently.” Sporadic means scattered about. Eg: Rabies, Tetanus, Herpes zoster, Meningococcal meningitis etc. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 13
  • 14. Pandemic “An epidemic affecting a large proportion of the population, occurring over a wide geographical area such as nation, a continent or world.” Eg: Influenza, Cholera, HIV. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 14
  • 15. Zoonosis “An infection or infectious disease transmitted under natural conditions from vertebrate animals to man.” Eg: Rabies, Plague, Anthrax, Brucellosis, Salmonellosis. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 15
  • 16. Zoonosis • Anthropozonosis: Infections transmitted from vertebrate animal to man. Eg: Rabies, Plague, Anthrax, KFD. • Zooanthroponoses: Infections transmitted from man to vertebrate animals Eg. Bovine tuberculosis 23/04/18 Infectious Disease Epidemiology - Dr. JRC 16
  • 17. Nosocomial infection “An infection originating in a patient while in a hospital or other health care facility.” Eg: Wound infection, UTI 23/04/18 Infectious Disease Epidemiology - Dr. JRC 17
  • 18. Opportunistic infection “Infection by an organism that takes the opportunity provided by a defect in host defense and cause disease.” Eg: Candidiasis, Cryptococcal meningitis in AIDS patients. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 18
  • 19. Iatrogenic disease “Any adverse consequences resulting from a physician’s professional activity or from the professional activity of other health personnel.” Eg: • Anaphylactic reaction to any antibiotics or immunoglobulin. • Acquiring HIV infection through injection or blood transfusion. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 19
  • 20. Notifiable diseases A disease that by statutory requirements, must be reported to the public health authority in the pertinent jurisdiction when the diagnosis is made. Eg: Recent addition to the list of notifiable disease is Tuberculosis 2023/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 21. Elimination “Interruption of transmission of disease in a given geographical area or region.” Eg. Elimination of Poliomyelitis. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 21
  • 22. Eradication “Termination of all transmission of infection by extermination of the infectious agent.” Termination of an infection from the whole world, so that disease will no longer occur in the world. Eg: Small pox is the only disease that has been eradicated. Current candidates for eradication are polio, measles 23/04/18 Infectious Disease Epidemiology - Dr. JRC 22
  • 23. Summary • Definitions in Epidemiology is important for reporting, planning and implementation of disease prevention and control programme. • Every medical students should know these definitions for the future use. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 23
  • 24. Dynamics of disease transmission “Our relationship with infectious pathogen is a part of an evolutionary drama” - Joshua Lederberg 23/04/18 Infectious Disease Epidemiology - Dr. JRC 24
  • 25. Source or reservoir 23/04/18 Infectious Disease Epidemiology - Dr. JRC 25
  • 26. Introduction Dynamics of disease transmission is the term mainly applicable for communicable diseases. • Communicable disease : Communicable disease is defined as an illness due to a specific infectious agent or its toxic products capable of being directly or indirectly transmitted from man to man, animal to animal, or from environment ( through air, dust, soil, water, food, etc) to man or animal. 2623/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 27. Transmission dynamics 27 Source or reservoir Modes of transmission Susceptible host 23/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 28. Source of infection Source of infection is defined as the person, animal, substance or object from which infectious agent passes or disseminates. Eg : Soil ---- Source of infection for Hook worm infestation Sputum -- Source of infection for Tuberculosis 2823/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 29. Reservoir of infection Is defined as any person, animal, arthropod, plant, soil, or substance (or combination of these) in which the infectious agent lives & multiplies on which it depends primarily for survival & where it reproduces itself in such a manner that it can be transmitted to the susceptible host E g : Man – Tuberculosis, HIV Dogs – Rabies Rodents – Plague 2923/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 30. Reservoirs & Sources Disease Reservoir Source Tuberculosis Man Sputum HIV / AIDS Man Body secretions, fluids Malaria Man / Mosquito Infected blood Rabies Dog / other animals Saliva Measles Man Droplets JE Pig & Birds Infected mosquitoes Cholera Man Unsafe water & food Typhoid Man Unsafe water and food 3023/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 31. Difference between source and reservoir Source of infection is an immediate source which may or may not be a part of reservoir E g : Hook worm infestation Source ---- soil Reservoir ---- Man 3123/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 32. Classification of reservoirs Reservoir Human Animal Non – living things 23/04/18 Infectious Disease Epidemiology - Dr. JRC 32
  • 33. Homologous reservoir Is one where another member of the same species acts as a victim Eg : Man is a principal reservoir for some enteric pathogens like V. cholera, Tuberculosis, Measles 23/04/18 Infectious Disease Epidemiology - Dr. JRC 33
  • 34. Heterologous reservoir Is applied when infection is derived from reservoir other than man Eg : Rabies 23/04/18 Infectious Disease Epidemiology - Dr. JRC 34
  • 35. Human reservoir Case Clinical illness Subclinical cases Latent infection Carrier Type Duration Portal of Exit 23/04/18 Infectious Disease Epidemiology - Dr. JRC 35
  • 36. Human reservoir – Case Case is defined as a person in a population or study group, identified to be having a particular disease, health disorder or condition under investigation. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 36
  • 37. Human reservoir – Case • Criteria to identify a case are 1. Clinical features 2. Biochemical tests 3. Laboratory investigations • Broadly presence of infection may be 1. Clinical 2. Sub clinical 3. Latent 23/04/18 Infectious Disease Epidemiology - Dr. JRC 37
  • 38. Human reservoir – Case – Clinical illness • Clinical cases may be Mild / Moderate / Severe Typical / Atypical • Epidemiologically mild cases are more important than moderate or severe cases • As mild cases are ambulating so they spread infection more than severe cases which have reduced mobility and usually confined to bed 23/04/18 Infectious Disease Epidemiology - Dr. JRC 38
  • 39. Human reservoir – Case – Subclinical cases • They are also referred to as in-apparent, covert, missed, abortive cases • The infectious agent multiplies in the host but does not manifest itself by signs and symptoms • Thus the persons who are not sick [ unbeknown to themselves & others] contribute more to the infectious disease transmission • They represent the submerged portion of iceberg they do not come under any statistics 23/04/18 Infectious Disease Epidemiology - Dr. JRC 39
  • 40. Human reservoir – Case – Subclinical cases These cases can only be detected in laboratories by 1. Recovery of organism : Blood culture ---- Staphylococci 2. Antibody response : Anti Hbs Ag antibodies -- Hepatitis B 3. Biochemical test : Acid phosphatase Tuberculosis 4. Skin sensitivity test : Monteux test ---- Tuberculosis Casoni’s test ---- Hydatid cyst 23/04/18 Infectious Disease Epidemiology - Dr. JRC 40
  • 41. Human reservoir – Case – Subclinical cases Proportion of individuals with asymptomatic / sub clinical cases determines the pathogenicity of the infectious agent. • Examples of sub clinical cases are Rubella, Hepatitis A / B, Poliomyelitis, Influenza, Diphtheria 23/04/18 Infectious Disease Epidemiology - Dr. JRC 41
  • 42. Human reservoir – Case – Latent Infection In latent infection the host does not shed the infectious agent, which lies dormant within the host without symptoms (and often without demonstrable presence in blood, tissues or bodily secretions of the host). Eg: Varicella zoster disease • Primary case: The first case of a communicable disease introduced into the population unit being studied. Eg : 1st case of measles in a village. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 42
  • 43. Human reservoir – Case – Latent Infection • Index case: First case of a communicable disease which comes to attention of an investigator. Eg : 1st case of measles coming to the PHC • Secondary case: These are the cases developing from contact with primary case. Eg : Classmate of first child developing the measles 23/04/18 Infectious Disease Epidemiology - Dr. JRC 43
  • 44. Human reservoir – Carriers Carrier is defined any infected person or animal that harbors a specific infectious agent in absence of any discernible clinical disease and serves as a potential source of infection for others. • Factors responsible for production of carriers are Inadequate treatment & Immune response elicited by host • Epidemiological importance: They escape recognition, They live normal life among population or community, They readily infect the susceptible individuals for a long period of time under favorable conditions. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 44
  • 45. Carriers – Classification Type Incubatory Convalescent Healthy Duration Temporary Permanent Portal of exit Urinary Intestinal Respiratory Others 23/04/18 Infectious Disease Epidemiology - Dr. JRC 45
  • 46. Human reservoir – Carriers – By type • Incubatory carriers : Incubatory carriers those who shed the infectious disease during the incubation period of the disease. That is they are capable of infecting others before the onset of illness. Eg : Measles, mumps, pertussis, diphtheria • Convalescent carriers: That is those who continue to shed the disease agent during the period of convalescence. Here the clinical recovery doesn’t co inside with bacteriological recovery. Eg : Typhoid – 6 to 8 weeks after recovery 23/04/18 Infectious Disease Epidemiology - Dr. JRC 46
  • 47. Human reservoir – Carriers – By type • Healthy carriers: They are the victims of sub clinical infection who developed carrier state without suffering from overt disease, but are nevertheless shedding the disease agent. Eg : Typhoid, cholera, meningococcal meningitis “A person who’s infection remains subclinical may or may not act as a carrier” Eg : Polio, Tuberculosis. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 47
  • 48. Human reservoir – Carriers – Duration • Temporary carrier: Eg: Mumps, cholera, Polio They spread infectious agent for a limited period of time, they include • Incubatory carriers • Convalescent carriers • Healthy carriers • Permanent carrier: Is one who excretes the infectious agent over a longer period of time. Eg : Typhoid, Malaria, Hepatitis B & A. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 48
  • 49. Human reservoir – Carriers • Longer the carrier state greater the risk to the community • Carriers may excrete infectious agent intermittently or continuously • Duration of carrier state varies with disease Eg : Typhoid, Hepatitis --- several years Pseudo carriers (Carriers of avirulent organism) --- Carriers of nonpathogenic Mycobacteria 23/04/18 Infectious Disease Epidemiology - Dr. JRC 49
  • 50. Human reservoir – Carriers – Portal of exit Portal of exit Example Urinary Typhoid Intestinal Amoebiasis Respiratory Tuberculosis Nasal Diphtheria 23/04/18 Infectious Disease Epidemiology - Dr. JRC 50
  • 51. Animal Reservoir • Zoonosis: An infection or infectious disease transmissible under natural conditions from vertebrate hosts to man. There are about 100 zoonosis which are transmissible to man Eg : Rabies --- Dogs Anthrax --- Cattle Influenza --- Pigs, chicks 23/04/18 Infectious Disease Epidemiology - Dr. JRC 51
  • 52. Animal Reservoir – Amplifying host Is one in which enormous multiplication of the infectious agent takes place, without the overt clinical disease. Eg : Pigs JE Pigeons Chlamydia Wild birds Mosquito born febrile illness There is evidence that genetic recombination between human & animal viruses might produce new strain of viruses Eg : Influenza --- Antigenic shift , Antigenic drift 23/04/18 Infectious Disease Epidemiology - Dr. JRC 52
  • 53. Soil Soil can harbor infection that can cause • Tetanus • Coccidioidomycosis • Mycetoma 23/04/18 Infectious Disease Epidemiology - Dr. JRC 53
  • 54. Modes of Transmission 23/04/18 Infectious Disease Epidemiology - Dr. JRC 54
  • 55. Modes of transmission Direct • Direct contact • Droplet infection • Contact with soil • Inoculation – skin , mucosa • Trans placental / vertical Indirect • Vehicle born • Vector born • Air born • Fomites • Unclean hands and fingers 23/04/18 Infectious Disease Epidemiology - Dr. JRC 55
  • 56. Direct transmission – Direct contact This implies an immediate transfer of infectious agent from reservoir or source to the susceptible host. Eg: Touch – Leprosy, Scabies, Kissing – Infectious mononucleosis. Sexual intercourse – HIV, Syphilis. • The infection may be transmitted from skin to skin, skin to mucosa, mucosa to mucosa of a same or another person • Direct contact ensures reduced time required for the infectious agent to survive in the external environment • Larger infective dose 23/04/18 Infectious Disease Epidemiology - Dr. JRC 56
  • 57. Direct transmission – Droplet infection Direct projection of droplets or saliva , nasopharyngeal secretions during coughing, talking, singing, sneezing, spitting, talking to the surrounding atmosphere They impinge largely over conjunctiva, respiratory mucosa or skin of close contacts. These droplets which contain millions of organisms are inhaled by the surrounding susceptible hosts and acquire infection Eg : Diphtheria, measles, whooshing cough, TB 23/04/18 Infectious Disease Epidemiology - Dr. JRC 57
  • 58. Direct transmission – Soil Infectious agent in the soil Direct exposure of susceptible host Organisms penetrate the skin Infection is acquired Soil acts as a source of infection for hookworm, tetanus mycosis. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 58
  • 59. Direct transmission – Inoculation into skin / mucosa Eg : Rabies the organisms in the saliva of dog and are directly inoculated into the skin/mucosa. Other examples are Hepatitis B, HIV 23/04/18 Infectious Disease Epidemiology - Dr. JRC 59
  • 60. Direct transmission – Transplacental / Vertical From mother to fetus. Eg : Toxoplasmosis, Rubella, Cytomegalovirus, Herpes simplex, Varicella. Some nonliving things like alcohol, thalidomide. This can occur through placenta, or during labour 23/04/18 Infectious Disease Epidemiology - Dr. JRC 60
  • 61. Indirect transmission Transfer of infectious agent from source or reservoir to susceptible host in agency of other factors. 5F’s : Flies, fingers, fomites, food, fluid • Essential requirements for indirect transmission - Capability to survive in external environment and retain pathogenicity and virulence • It depends on Characteristics of agent, The inanimate object, Environmental factors, Resistance to drugs 23/04/18 Infectious Disease Epidemiology - Dr. JRC 61
  • 62. Indirect transmission – Vehicle borne Vehicle borne disease transmission implies transmission of infectious agent through the agency of water, food, blood, serum. Water: Dead, decaying matter with faeces in soil mixes with rain water. The infectious agent reaches river and water resources agent continues to multiply in water reaching susceptible host. • Man is the commonest contributor for water pollution 23/04/18 Infectious Disease Epidemiology - Dr. JRC 62
  • 63. Indirect transmission – Vehicle borne • Water borne diseases: • Eg : Diarrheal diseases, Cholera, Hepatitis A,E, Bacillary dysentery, Polio, typhoid • Food born diseases: • Include, food poisoning, intestinal parasites • Staphylococcus : External contamination • Salmonellosis : Pre existing poison • Intestinal parasites – Ascaris lumbricoides 23/04/18 Infectious Disease Epidemiology - Dr. JRC 63
  • 64. Epidemiological features – Vehicle borne diseases • If the dose of contamination is heavy, outbreak may be explosive • Cases are confined to those who are exposed to contaminated vehicle in some infections • When secondary cases occur primary cases are obscured • The distance traveled by the infectious agent may be great Eg : Food poisoning • It is not always possible to isolate the infectious agent in the incriminated vehicle. Eg : Typhoid • When the vehicle is controlled or withdrawn the epidemic subsides Eg : Cholera • Common source of infection is often traceable 23/04/18 Infectious Disease Epidemiology - Dr. JRC 64
  • 65. Indirect transmission – Vector borne Vector is defined as an arthropod or any living carrier that transports the infectious agent to the susceptible individual • Classification : By vector : • 23/04/18 Infectious Disease Epidemiology - Dr. JRC 65
  • 66. Classification of Vector Borne : by Vector Vertebrate type • Mice • Rodents • Bats Invertebrate type: Arthropod • Diptera. : Flies / mosquitoes • Siphonaptera: Fleas • Orthoptera. : Cockroaches • Anopleura. : Suckling lice • Hemiptera. : Bugs • Acarina. : Ticks • Copepoda. : Cyclops 23/04/18 Infectious Disease Epidemiology - Dr. JRC 66
  • 67. Classification of Vector Borne : by vector transmits disease 1. Biting – Malaria 2. Regurgitation – Plague 3. Scratching in of infective faeces – Enterobius 4. Contamination of host with body fluids by vectors 23/04/18 Infectious Disease Epidemiology - Dr. JRC 67
  • 68. Classification of Vector Borne : by transmission chain Man & non- vertebrate Host • Man – Arthropod – Man : Malaria • Man – snail – man : Schistosomiasis Man – Another vertebrate & Non- vertebrate host • Mammal – Arthropod – Man : Plague • Bird – arthropod – man (encephalitis) Man & two intermediate hosts • Man – Cyclopes – Fish – Man : Fish tapeworm • Man – Snail – Crab – Man : Paragonimus 23/04/18 Infectious Disease Epidemiology - Dr. JRC 68
  • 69. Classification of Vector Borne : By methods in which vectors are involved in the transmission A. Mechanical transmission: Infectious agent is mechanically transported by crawling, or flying arthropod with soiling of it’s feet or proboscis or by passing of organism through it’s GI tract and passively excreted • There is no development or multiplication of organism in the vector Eg : Flies transmitting cholera, typhoid 23/04/18 Infectious Disease Epidemiology - Dr. JRC 69
  • 70. Classification of Vector Borne : By methods in which vectors are involved in the transmission B. Biological transmission: The infectious agent undergoing development or multiplication or both in the vector & requires an incubation period before vector can transmit the disease • Extrinsic incubation period : This is the interval between entrance of infectious agent in the vector and vector becoming infective. i. Propogative type: The infectious agent merely multiplies but no change in the form. Eg : Plague bacilli in rat flea 23/04/18 Infectious Disease Epidemiology - Dr. JRC 70
  • 71. Classification of Vector Borne : By methods in which vectors are involved in the transmission ii. Cyclopropogative type: In this form the agent changes its number and form thus there is both multiplication and development. Eg : Malaria in Anopheles mosquito iii. Cyclodevelopmental type: In this type the disease agent undergoes only development but no multiplication. Eg : Wucheraria bancrofti microfilaria 23/04/18 Infectious Disease Epidemiology - Dr. JRC 71
  • 72. Classification of Vector Borne : By methods in which vectors are involved in the transmission • Transovarial transmission: When the infectious agent transmitted vertically from female mosquito to it’s progeny. Eg: Aedes aegypti : In chikungunya • Trans – stadial transmission: Transmission of infectious agent from one stage of life cycle to the next. Eg : Aedes aegypti : Yellow fever Factors influencing ability of vectors to transmit the disease: Host feeding preference, Infectivity, Susceptibility & Survival rate of vectors 23/04/18 Infectious Disease Epidemiology - Dr. JRC 72
  • 73. Air borne transmission – Droplet nuclei • Droplets ( 0.1 mm) : They evaporate in the environment & dry Droplet nuclei ( 1-10mico m) • Droplet nuclei may be formed from evaporation of the particles coughed and sneezed • They can also be generated by microbiological labs by variety of atomizing devises • These droplets remain suspended in air for long time sometimes loosing / retaining infectivity • Particles between 1-5microns liable to easily drawn into alveoli and retain there. Eg: TB, Influenza 23/04/18 Infectious Disease Epidemiology - Dr. JRC 73
  • 74. Air borne transmission – Smog & Dust • Smog : • Air borne spread of toxic air pollutants resulting in air pollution epidemic • Dust: • Larger particles expelled during coughing, sneezing. • They settle down by their shear weight on the floor, carpets, furniture, bedding, clothes. • They become part of dust that is small particles of varying size arising from soil. • This dust contains variety of organisms. During act of sweeping, bed making they are released. Inhalation of this dust leads to infection 23/04/18 Infectious Disease Epidemiology - Dr. JRC 74
  • 75. Air borne transmission – Dust • Dust may also be released from floor by wind (Fungal spores) • Other infections are Pneumonia, TB, Psittacosis • Dust may remain unsettled in the milk/ uncovered food this type of infection causes nosocomial infection 23/04/18 Infectious Disease Epidemiology - Dr. JRC 75
  • 76. Air borne transmission – Fomites borne They are inanimate articles other than water & milk contaminated by the infectious discharges from the patient capable of harboring & transmitting infectious agent to healthy person. • Eg : Clothes, towels, linen, handkerchiefs, cups Diseases transmitted are diphtheria, Dysentery 23/04/18 Infectious Disease Epidemiology - Dr. JRC 76
  • 77. Air borne transmission – Unclean hands and fingers • Hands are most common medium through which the infectious agents are transferred to food from skin, nose, bowel • Transmission takes place directly from hand to mouth • Eg : Staphylococcal, streptococcal infections, dysentery • Unclean hands indicate poor personal hygiene • Parenteral transmission : Occurs by common use of syringes, needles among IV drug abusers. 2.2% HIV transmission is by parenteral root 23/04/18 Infectious Disease Epidemiology - Dr. JRC 77
  • 78. Susceptible Host 23/04/18 Infectious Disease Epidemiology - Dr. JRC 78
  • 79. Susceptible host • Host: A person or animal including birds or arthropods that affords subsistence or lodgment of an infectious agent under natural conditions. • Obligate host: Means the only host. Eg : Measles • Definitive host: Hosts in which parasites attains maturation or passes it’s sexual cycle • Intermediate host: Host in which parasite in asexual or larval state 23/04/18 Infectious Disease Epidemiology - Dr. JRC 79
  • 80. Host factors in communicable diseases • Age : Extremes of age more chances of infection • Sex • Marital status • Nutritional status • Immunization status: • Literacy • Occupation • Behavioral factors • Immune status 23/04/18 Infectious Disease Epidemiology - Dr. JRC 80
  • 81. Successful parasitism Four stages: • Portal of entry • Site of election • Portal of exit • Survival capacity in external environment Incubation period: Defined as the time interval between the invasion of infectious agent and appearance of first sign or symptom of disease 23/04/18 Infectious Disease Epidemiology - Dr. JRC 81
  • 82. Median incubation period Time required for 50 % of cases to occur following exposure • Factors determining the incubation period • Generation time of a particular pathogen • Infective dose • Portal of entry • Individual susceptibility • Infectious diseases communicable during incubation period are Measles, chickenpox, whooping cough 23/04/18 Infectious Disease Epidemiology - Dr. JRC 82
  • 83. Characteristics of incubation period • Length of incubation period is characteristic of a particular disease • There is a minimum period below which there is no illness can occur • Varies from person to person for a same disease • Different for different diseases • In some diseases incubation period is very small ranging from few hours to 2-3 days • Medium ( 10days – 3weeks ) – Typhoid, chickenpox • Long : Hepatitis B, leprosy sometimes unpredictable 23/04/18 Infectious Disease Epidemiology - Dr. JRC 83
  • 84. Why to know about incubation period • Tracing the source of infection • Period of surveillance or Quarantine • Immunization • Identification of point source or propagated epidemic • Prognosis • Serial interval: The gap in time between primary and secondary cases is known as serial interval • By getting the series of information about primary & secondary cases we can calculate incubation period 23/04/18 Infectious Disease Epidemiology - Dr. JRC 84
  • 85. Generation time • It is the interval of time between receipt of infection by the host and maximum infectivity • Generation time is roughly equal to incubation period • Maximum communicability may precede or follow the incubation period • Incubation period can be calculated only when the infection manifests with clinical features • Generation time refers to transmission of infection whether clinical or subclinical 23/04/18 Infectious Disease Epidemiology - Dr. JRC 85
  • 86. Communicable period Defined as time during which an infectious agent may be transferred directly or indirectly from an infected person to another person, from an infected animal to man or infected person to animals including arthropods • Communicability varies among different diseases • Some diseases are more communicable during incubation period than actual illness • Communicability of some diseases can be reduced by early diagnosis and treatment 23/04/18 Infectious Disease Epidemiology - Dr. JRC 86
  • 87. Secondary attack rate Number of exposed persons developing the disease within the range of the incubation period following exposure to the primary case. • The denominator may be restricted to only susceptible contacts. • The primary case is excluded from both numerator and denominator. 87 SAR = × 100 No. of exposed persons developing the disease with in the range of the I.P Total No. of exposed/susceptible contacts 23/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 88. Secondary attack rate Limitations: 1. It is limited to infections with primary case infective only for a short period of time 2. If the primary case is infective for a long period of time duration of exposure is an important factor in determining extent of spread 23/04/18 Infectious Disease Epidemiology - Dr. JRC 88
  • 89. Secondary attack rate Limitations: 3. Another limitation is to identify susceptible. It is feasible only in diseases like measles, chickenpox where history can be used as a basis of identification but in majority of cases the susceptible cannot be readily identified 4. SAR has limited role in diseases which have numerous subclinical cases. Further spread can’t be measured without lab investigations 23/04/18 Infectious Disease Epidemiology - Dr. JRC 89
  • 90. Secondary attack rate – Advantages • Vaccinees and nonvaccinees from several families can be added to determine the over all attack rates in the vaccinated and unvaccinated populations provided the same definitions for cases and immunization status are used • SAR was initially developed to measure the spread of infection within family, household or any close aggregate of persons who have had contact with case • It is useful to determine diseases of unknown etiology is communicable or not • Evaluation of control measures – Isolation, Immunization 23/04/18 Infectious Disease Epidemiology - Dr. JRC 90
  • 91. Summary • Communicable diseases are major public health problem since ancient days but still remained as problems • The source & reservoir of infection • Carriers, sub clinical cases are keys for the spreading the diseases • Pathogenesity, virulence, resistance are weapons for infectious agent • Direct, indirect ways of transmission • Vehicles, vectors , fomites ,Food, dust, droplets are routes of spread 23/04/18 Infectious Disease Epidemiology - Dr. JRC 91
  • 92. Summary • Host is the recipient of infectious agent and hence the victim • Incubation period, generation time, serial interval, secondary attack rate are tools for measurement and control 23/04/18 Infectious Disease Epidemiology - Dr. JRC 92
  • 93. Disease prevention & control 23/04/18 Infectious Disease Epidemiology - Dr. JRC 93
  • 94. Disease Prevention & Control • Controlling the reservoir • Early diagnosis & treatment • Notification • Epidemiological investigation • Isolation • Treatment • Quarantine 23/04/18 Infectious Disease Epidemiology - Dr. JRC 94
  • 95. Disease Prevention & Control • Interruption of transmission • Susceptible host 23/04/18 Infectious Disease Epidemiology - Dr. JRC 95
  • 96. Controlling the Reservoir – Early Diagnosis & Treatment • Detection of cases and carriers helps in prompt treatment. Early diagnosis is useful for • Treatment of patients • Epidemiological investigation – Eg.. To trace the source of infection from known or index case to unknown or primary source of infection • To study the time, place and person distribution • For the institution of preventive & control measures 23/04/18 Infectious Disease Epidemiology - Dr. JRC 96
  • 97. Controlling the Reservoir – Notification • Notification to the local health authority to take up control measure including the provision of medical care to the patients. • The serious diseases which are serious menace to public health are included in the list of notifiable diseases. • Notification is done by the head of the family including lay people. • Diagnosis is verified by the local health authority. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 97
  • 98. Controlling the Reservoir – Notification • As per international health regulations notifiable diseases are cholera, plague and typhoid fever. Diseases under surveillance by WHO – louse borne typhus fever, relapsing fever, paralytic polio, malaria, viral influenza A, SARS etc… 23/04/18 Infectious Disease Epidemiology - Dr. JRC 98
  • 99. Controlling the Reservoir – Investigation • It covers the identification of source of infection and of the factors influencing its spread in the community which include • Geographical situation, • Climatic condition, • Social, cultural and behavioral pattern • Character of reservoir, vectors, vehicles and the susceptible host population 23/04/18 Infectious Disease Epidemiology - Dr. JRC 99
  • 100. Controlling the Reservoir – Isolation • Separation for the period of communicability of infected persons, or animals from others in such places and under such conditions as to prevent or limit the direct or indirect transmission of the infectious agent from those infected to susceptible or who may spread the agent to others. 23/04/18 Infectious Disease Epidemiology - Dr. JRC 100 Disease Duration of isolation Chicken pox Until all lesions crusted – 6 days after the onset of rashes Measles From the onset of catarrhal stage to the 3rd day of rash Mumps Until parotid swelling subsides Hepatitis A 3 weeks
  • 101. Controlling the Reservoir – Treatment • Reduces the period of communicability, • Cuts short the duration of illness and • Prevents the development of secondary cases 23/04/18 Infectious Disease Epidemiology - Dr. JRC 101
  • 102. Controlling the Reservoir – Quarantine The limitation of freedom of movement of such well person or domestic animals exposed to communicable disease for a period of time not longer than the longest usual I.P. of the disease in such manner as to prevent effective contact with those not so exposed. Eg. All travelers from yellow fever endemic zone is placed on quarantine for 6 days from date of leaving that area if vaccination certificate is not available • Quarantinable diseases are – Plague, Yellow fever, SARS 10223/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 103. Interruption of transmission • It means the breaking the chain of transmission for eg.. • Water borne diseases like Typhoid, Dysentery, Cholera Hepatitis A can be prevented by provision of safe drinking water supply. • Food borne diseases can be prevented by improving food sanitation like clean practices such as hand washing, adequate cooking, prompt refridegeration of prepared foods and withdrawal of contaminated foods • Prevention of vector borne diseases by adequate vector control measures. 10323/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 104. Susceptible host • Susceptible host is protected by • Active immunization • Passive immunization • Combined (active & passive) immunization • Chemoprophylaxis • Non specific measures 10423/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 105. Susceptible host – Active immunization • UIP vaccination for all children as per national immunization schedule 10523/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 106. Susceptible host – Passive immunization • Eg.. • Anti Rabies Serum for rabies • Anti Tetanus Serum for Tetanus 10623/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 107. Susceptible host – Combined Immunization • ARS + ARV for class 3 dog bite cases • ATS + TT in the treatment of Tetanus 10723/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 108. Susceptible host – Chemoprophylaxis • Administration of specific drugs for contacts for the prevention of the disease before the occurrence of the disease, Eg.. • Diphtheria – Erythromycin and first dose of vaccine • Cholera – Tetracycline for all household contacts • Malaria – 300mg of Chloroquine base once a week, same day of each week should be started one week before entering a malaria endemic area, continue during the stay there and continued for one week after returning back. 10823/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 109. Susceptible host – Nonspecific Measures • Improvement in the quality of life • Better housing • Water supply • Sanitation • Nutrition • Education - has brought down most of the communicable disease like Tb, Cholera, child mortality. 10923/04/18 Infectious Disease Epidemiology - Dr. JRC
  • 110. Any Questions? 23/04/18 Infectious Disease Epidemiology - Dr. JRC 110