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FDA Feedback Regarding Chemistry for
Toxicological Risk Assessment –
How to Make Sure FDA will Accept Your Protocol
Matthew R. Jorgensen, PhD, DABT
Chemist, Materials Scientist, Toxicologist
mjorgensen@nelsonlabs.com
Thor Rollins, BS, RM(NRCM)
Director, Toxicology and E&L Consulting
trollins@nelsonlabs.com
“Greenlight Guru Software is the handrail for Medical Device
Development and Documentation”
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Thor Rollins
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Dr. Matt Jorgensen, DABT
Chemist, Materials Scientist,
and Board Certified Toxicologist
Mtn Dew Enthusiast
Outline
3
What is ChemTox?
• One Slide Overview of Fundamentals of Toxicology
• Basic Principles of Chemistry for Toxicology
FDA Feedback Outlining Changes to Expectations
• Extractions (solvents, exaggerated/exhaustive conditions)
• Sample Preparation (solvent exchange and concentrations)
• Method Suitability (reference standards, spike and recovery)
How to Address FDA Concerns
• Overlap Between Expectations and 10993-18
• Development of an FDA Approvable Protocol
Systemic Toxicological Effects
4
Endpoints Required for Evaluation:
• Cytotoxicity
• Sensitization
• Irritation
• Material Mediated Pyrogenicity
• Acute Systemic Tox
• Subacute/Subchronic Tox
• Chronic Tox
• Hemocompatibility
• Genotoxicity
• Carcinogenicity
• Implantation
Systemic Toxicological Effects: ChemTox Accepted by FDA
5
Required Endpoint for Evaluation:
• Cytotoxicity
• Sensitization
• Irritation
• Material Mediated Pyrogenicity
• Acute Systemic Tox
• Subacute/Subchronic Tox
• Chronic Tox
• Hemocompatibility
• Genotoxicity
• Carcinogenicity
• Implantation
One Slide Intro to Toxicology
6
Seeks an answer to a fundamental question:
How much of a good thing is too much?
• Route of exposure
• Duration of exposure
• Potential negative outcomes
Oral Caffeine mg/kg to Dr Dew
(Acidic, Aqueous, Delicious Vehicle)
Irritability
New “Normal”
Arrythmia
Tremors
50% Chance
of Death
Death
Hallucinations
~150 mg/kg
11.5 g or 100 Red Bulls
Dose/Response Curves: Xenobiotics
7
Dose mg/kg, Oral, Rat
PercentResponse
AdverseEffect
Highest Dose
Where Nothing Bad
Happened
(NOAEL) LOAEL
Dose Where Something Bad
Happened 50% of the Time
Max
Response
Chemistry Strategy Framed by Problem
• ANY substance that could
realistically leave the device during
use and enter the body
– Metals
– Production oils and other residuals
– Plastic additives
– Byproducts
• Ignore substances that are
impossible/improbable
Chemistry Strategy Framed by Problem
Suite of Analytical Methods
ANY Substance
(That Could Leave The Device)
Inorganic
(not carbon based)
Metals
And
Metal Oxides
Organic
(carbon based)
Very Small Molecules -
Volatile Organics (VOCs)
Small Molecules - Semi-
Volatile Organics (SVOCs)
Big Molecules – Non-
Volatile Organics (NVOCs)
Small molecules
evaporate easily,
great for
gas chromatography
(GC)
Big molecules
do not evaporate easily,
great for
liquid chromatography
(LC)
Critical Criteria for Chemistry: Sufficient Breadth and Sensitivity
11
Dose mg/kg, Oral, Rat
PercentResponse
AdverseEffect
Highest Dose
Where Nothing Bad
Happened
(NOAEL) LOAEL
Dose Where Something Bad
Happened 50% of the Time
Max
Response
Where is the Point of
Departure (POD)?
Changed Expectations: Choice of Extraction Vehicles
12
𝛿 𝑠𝑜𝑙 = 𝑓𝑎 𝛿 𝑎 + 𝑓𝑏 𝛿 𝑏 + ⋯
𝛿10% 𝐸𝑡𝑂𝐻 = 0.9 ∙ 80 + 0.1 ∙ 24.3 = 74.4
Water
Blood
Brain
Water = 80
Blood = 70-75
Brain Tissue = 43-58
IPA = 18.3
Hexane = 2.0
IPA
Hexane
Changed Expectations: Choice of Extraction Vehicles
13
Recent FDA Feedback
In your repeat testing, you conducted chemical characterization for the DEVICE using
exhaustive extraction conditions in polar (ultra purified water, UPW), non-polar (hexane), and
mixed polarity (40% ethanol in ultra purified water) solvents with analysis by HS-GC-MS, GC-
MS, UHPLC-HRAM, ICP-OES, and ICP-MS.
The polarity of 40% ethanol in water is very close to the polarity of water and therefore FDA
does not consider 40% ethanol in water to be a mid-polar solvent. Please repeat exhaustive
extractions using isopropanol as your mid-polar solvent as was done in your original chemical
characterization report.
Yet, in the new 10993-18,
Changed Expectations: Choice of Extraction Vehicles
14
Recent FDA Feedback
We recommend that for implants with permanent contact (> 30 days), exhaustive
extraction should be conducted with polar, mid polar, and non-polar solvents to
generate worst-case extractables profiles. Therefore, we recommend that you
conduct exhaustive extraction with final finished implantable devices using
appropriate solvents (e.g., water, isopropyl alcohol, and hexane).
Lack of flexibility on this point observed across many device classes, including
limited contact devices and gas-path devices.
“Leachables may leave the device and remain in the body, therefore the
device is permanent”
Changed Expectations: Exhaustive Extractions
15
Source: ISO 10993-18 (2020)
Changed Expectations: Exhaustive Extractions
16
• NVR can still be used to demonstrate exhaustively
• TOC, THC, and ICP/MS have been successfully used
• Full work-up at 24 hour intervals by GC/MS, LC/MS, and ICP/MS have been successful
Recent FDA Feedback
You state that the total mass of Non-Volatile Residue water extracts was 40.1 mg. However,
based on the information provided, FDA calculates that there was a total water extract amount
of 3.12 mg for semi-volatile organic compounds as determined by GC-MS and 7.42 mg for non-
volatile organic compounds as determined by UHPLC-MS. Based on your data, FDA calculates
that there is 81% of unaccounted mass for the water extracts. FDA is concerned that there is a
significant amount of mass that is unaccounted for...
Changed Expectations: Method Suitability
17
• FDA has been requesting evidence of method suitability that is becoming more close to
what is expected in an EPA study:
• Method validation including precision and accuracy for a wide range of compounds
• Matrix spike and recovery through analytical process (including solvent exchange)
• Laboratory control samples, calibration curve verifications, etc.
• Defense or explanation of accuracy of non-validated compounds
The Analytical Evaluation Threshold
Final AET
ISI
All compounds above the AET:
Reported, identified and
quantified
2
1
3 4 5 6
7
8
Determining the Required Analytical Sensitivity
• Goal is to minimize risk related to undetected
compounds below the analytical sensitivity
• Consideration must be given to uncertainty in
accuracy of measurement (generally a factor of
2 to 4)
The Analytical Evaluation Threshold
Recent FDA Feedback (in regards to AET calculation)
We asked you to justify the analytical Uncertainty Factor (UF) of 4. In response to this question,
your Q-sub refers to the papers by Jordi and Jenke to justify an uncertainty factor of 4. However,
the references do not unequivocally recommend using a UF of 4. According to paper by Jordi et
al, “It is recommended that the AET be lowered by applying either a 50% reduction or a
correction factor equal to the % RSD of the relative response factor database. The approach
which provides the largest reduction should be applied.” Although you used a conservative UF
value of 4, you did not provide any data to justify the UF of 4. You should provide calculations
you made based on the %RSD value of the relative response factors to justify using a UF of 4.
𝐴𝐸𝑇
𝜇𝑔
𝑑𝑒𝑣𝑖𝑐𝑒
=
𝐷𝐵𝑇
𝜇𝑔
𝑑𝑒𝑣𝑖𝑐𝑒
𝑈𝐹
How Does E&L Work: Identification and Quantification
• GC/MS: Electron Ionization (EI)
– Literally shooting molecules with an
electron machine gun
– Highly standardized and reproducible
• LC/MS and LC/HRAM
– More variable from lab to lab
– Atmospheric Pressure Chemical
Ionization (APCI±)
– Electrospray Ionization (ESI±)
– MS is “low resolution” and good for
targeted lists
– High resolution accurate mass (HRAM)
good for screening but requires special
expertise
Extra Caution Needed with Identifications
O
O
O
O
O
O
NIST, Automatic ID
Internal DB
With
Expert Review
Extra Caution Needed with Identifications
Extra Caution Needed with Identifications
Regarding Identifications:
• We do not recommend choosing a structure associated with the highest
match factor without providing a justification for eliminating other
potential matches.
• All potential identifications should be provided so that they can be
considered in the toxicological risk assessment.
• Substances for which only partial structure data is available should be
designated as unknown in the test report and for toxicological risk
assessment.
• If a class of substances is to be listed as the identification, then all potential
members of the class should be provided.
Extra Caution Needed with Identifications
Regarding Identifications:
• If a class of substances is to be listed as the identification, then all potential
members of the class should be provided.
C4 Alkanes: 2 members
C5 Alkanes: 3 members
C6 Alkanes: 5 members
C12 Alkanes: 355 members
C32 Alkanes: 27.7 billion members
Leachables Studies: When to Conduct Them and How?
Typical Extractables Analytical Test Matrix
Analytical Method
Polar
(water)
Mid-Polar
(IPA)
Non-Polar
(hexane)
Elements
ICP/MS and ICP/OES
X N/A N/A
VOCs
Headspace GC/MS
X N/A N/A
SVOCs
Direct Injection GC/MS
X X X
NVOCs
HRAM-UPLC/MS, APCl ±
N/A X X
NVOCs
HRAM-UPLC/MS, APCI/ESI ±
X N/A N/A
• The device is extracted per ISO
10993 standards
– 50 °C for 72 hours
– Polar, Mid-Polar, and Non-Polar
Solvents
• If there are problems, then
non-standard conditions can
be used
– 37 °C for 24 hours
– 10% EtOH in water
– Other conditions which closely
mimic clinical use
Even if we know that an extractables study will “fail,” it
is still conducted, followed by a leachables (simulated
use extractable) study targeted to the problem.
Feedback from FDA on Reporting
Regarding Reporting, the Following Should be Included:
• Calibration data that demonstrates that suitability of the calibration
method across the range needed for quantification.
• Chromatographic data that includes labeling to discern retention time and
relative signal intensity.
• Substance information when higher than the AET:
– (1) Retention time, (2) proposed identity(ies), (3) chemical name (e.g. IUPAC name), (4)
CAS number, (5) structural descriptor (e.g. SMILEs), (6) identification confidence level, (7)
type of identification data (e.g. spectra library match), (8) quantification method (e.g.
fully quantitative using an authentic standard, semi-quantitative based on a relative
response factor, or semi-quantitative using a surrogate response factor), (9)
concentration (e.g. in μg/ml), and (10) quantity (μg/device).
What the FDA Wants
In General:
Reports Include-
• Introduction and Study Standards: “This is a medical device extractables study conducted
per ISO 10993-18:2020”
• Photos of the devices before and after extraction
29
Reports Include-
30
Reports Include-
31
Reports Include-
32
Reports Include-
33
Reports Include-
34
Conclusion on ChemTox and FDA
• It should be understood that ChemTox is often viewed as a requirement and
undergoing a period of intense scrutiny by regulators
• The process should begin with a collaboration between the toxicologist and
the chemistry lab; erring on the side of providing more detail
• A detailed testing plan is recommended; this should be given to the FDA as
part of their pre-sub program
• Goals: Save animal lives, save time, save money, and IMPROVE PATIENT
SAFETY!
Questions?
36

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FDA Feedback Regarding Chemistry for Toxicological Risk Assessment – How to Make Sure FDA will Accept Your Protocol

  • 1. FDA Feedback Regarding Chemistry for Toxicological Risk Assessment – How to Make Sure FDA will Accept Your Protocol Matthew R. Jorgensen, PhD, DABT Chemist, Materials Scientist, Toxicologist mjorgensen@nelsonlabs.com Thor Rollins, BS, RM(NRCM) Director, Toxicology and E&L Consulting trollins@nelsonlabs.com
  • 2. “Greenlight Guru Software is the handrail for Medical Device Development and Documentation” FEATURED IN 75 years industry experience 275k podcast listeners #1 blog and podcast in the industry 90k look to us for the latest in medical device quality MEDICAL DEVICE QUALITY IS ALL WE DO, AND WE’RE ALWAYS AHEAD OF THE GAME. “My QMS is world class” “One stop shop for MDQMS”
  • 3. Toxicology Consulting Group Thor Rollins Director of Consulting Biocompatibility Wizard Dr. Matt Jorgensen, DABT Chemist, Materials Scientist, and Board Certified Toxicologist Mtn Dew Enthusiast
  • 4. Outline 3 What is ChemTox? • One Slide Overview of Fundamentals of Toxicology • Basic Principles of Chemistry for Toxicology FDA Feedback Outlining Changes to Expectations • Extractions (solvents, exaggerated/exhaustive conditions) • Sample Preparation (solvent exchange and concentrations) • Method Suitability (reference standards, spike and recovery) How to Address FDA Concerns • Overlap Between Expectations and 10993-18 • Development of an FDA Approvable Protocol
  • 5. Systemic Toxicological Effects 4 Endpoints Required for Evaluation: • Cytotoxicity • Sensitization • Irritation • Material Mediated Pyrogenicity • Acute Systemic Tox • Subacute/Subchronic Tox • Chronic Tox • Hemocompatibility • Genotoxicity • Carcinogenicity • Implantation
  • 6. Systemic Toxicological Effects: ChemTox Accepted by FDA 5 Required Endpoint for Evaluation: • Cytotoxicity • Sensitization • Irritation • Material Mediated Pyrogenicity • Acute Systemic Tox • Subacute/Subchronic Tox • Chronic Tox • Hemocompatibility • Genotoxicity • Carcinogenicity • Implantation
  • 7. One Slide Intro to Toxicology 6 Seeks an answer to a fundamental question: How much of a good thing is too much? • Route of exposure • Duration of exposure • Potential negative outcomes Oral Caffeine mg/kg to Dr Dew (Acidic, Aqueous, Delicious Vehicle) Irritability New “Normal” Arrythmia Tremors 50% Chance of Death Death Hallucinations ~150 mg/kg 11.5 g or 100 Red Bulls
  • 8. Dose/Response Curves: Xenobiotics 7 Dose mg/kg, Oral, Rat PercentResponse AdverseEffect Highest Dose Where Nothing Bad Happened (NOAEL) LOAEL Dose Where Something Bad Happened 50% of the Time Max Response
  • 10. • ANY substance that could realistically leave the device during use and enter the body – Metals – Production oils and other residuals – Plastic additives – Byproducts • Ignore substances that are impossible/improbable Chemistry Strategy Framed by Problem
  • 11. Suite of Analytical Methods ANY Substance (That Could Leave The Device) Inorganic (not carbon based) Metals And Metal Oxides Organic (carbon based) Very Small Molecules - Volatile Organics (VOCs) Small Molecules - Semi- Volatile Organics (SVOCs) Big Molecules – Non- Volatile Organics (NVOCs) Small molecules evaporate easily, great for gas chromatography (GC) Big molecules do not evaporate easily, great for liquid chromatography (LC)
  • 12. Critical Criteria for Chemistry: Sufficient Breadth and Sensitivity 11 Dose mg/kg, Oral, Rat PercentResponse AdverseEffect Highest Dose Where Nothing Bad Happened (NOAEL) LOAEL Dose Where Something Bad Happened 50% of the Time Max Response Where is the Point of Departure (POD)?
  • 13. Changed Expectations: Choice of Extraction Vehicles 12 𝛿 𝑠𝑜𝑙 = 𝑓𝑎 𝛿 𝑎 + 𝑓𝑏 𝛿 𝑏 + ⋯ 𝛿10% 𝐸𝑡𝑂𝐻 = 0.9 ∙ 80 + 0.1 ∙ 24.3 = 74.4 Water Blood Brain Water = 80 Blood = 70-75 Brain Tissue = 43-58 IPA = 18.3 Hexane = 2.0 IPA Hexane
  • 14. Changed Expectations: Choice of Extraction Vehicles 13 Recent FDA Feedback In your repeat testing, you conducted chemical characterization for the DEVICE using exhaustive extraction conditions in polar (ultra purified water, UPW), non-polar (hexane), and mixed polarity (40% ethanol in ultra purified water) solvents with analysis by HS-GC-MS, GC- MS, UHPLC-HRAM, ICP-OES, and ICP-MS. The polarity of 40% ethanol in water is very close to the polarity of water and therefore FDA does not consider 40% ethanol in water to be a mid-polar solvent. Please repeat exhaustive extractions using isopropanol as your mid-polar solvent as was done in your original chemical characterization report. Yet, in the new 10993-18,
  • 15. Changed Expectations: Choice of Extraction Vehicles 14 Recent FDA Feedback We recommend that for implants with permanent contact (> 30 days), exhaustive extraction should be conducted with polar, mid polar, and non-polar solvents to generate worst-case extractables profiles. Therefore, we recommend that you conduct exhaustive extraction with final finished implantable devices using appropriate solvents (e.g., water, isopropyl alcohol, and hexane). Lack of flexibility on this point observed across many device classes, including limited contact devices and gas-path devices. “Leachables may leave the device and remain in the body, therefore the device is permanent”
  • 16. Changed Expectations: Exhaustive Extractions 15 Source: ISO 10993-18 (2020)
  • 17. Changed Expectations: Exhaustive Extractions 16 • NVR can still be used to demonstrate exhaustively • TOC, THC, and ICP/MS have been successfully used • Full work-up at 24 hour intervals by GC/MS, LC/MS, and ICP/MS have been successful Recent FDA Feedback You state that the total mass of Non-Volatile Residue water extracts was 40.1 mg. However, based on the information provided, FDA calculates that there was a total water extract amount of 3.12 mg for semi-volatile organic compounds as determined by GC-MS and 7.42 mg for non- volatile organic compounds as determined by UHPLC-MS. Based on your data, FDA calculates that there is 81% of unaccounted mass for the water extracts. FDA is concerned that there is a significant amount of mass that is unaccounted for...
  • 18. Changed Expectations: Method Suitability 17 • FDA has been requesting evidence of method suitability that is becoming more close to what is expected in an EPA study: • Method validation including precision and accuracy for a wide range of compounds • Matrix spike and recovery through analytical process (including solvent exchange) • Laboratory control samples, calibration curve verifications, etc. • Defense or explanation of accuracy of non-validated compounds
  • 19. The Analytical Evaluation Threshold Final AET ISI All compounds above the AET: Reported, identified and quantified 2 1 3 4 5 6 7 8
  • 20. Determining the Required Analytical Sensitivity • Goal is to minimize risk related to undetected compounds below the analytical sensitivity • Consideration must be given to uncertainty in accuracy of measurement (generally a factor of 2 to 4)
  • 21. The Analytical Evaluation Threshold Recent FDA Feedback (in regards to AET calculation) We asked you to justify the analytical Uncertainty Factor (UF) of 4. In response to this question, your Q-sub refers to the papers by Jordi and Jenke to justify an uncertainty factor of 4. However, the references do not unequivocally recommend using a UF of 4. According to paper by Jordi et al, “It is recommended that the AET be lowered by applying either a 50% reduction or a correction factor equal to the % RSD of the relative response factor database. The approach which provides the largest reduction should be applied.” Although you used a conservative UF value of 4, you did not provide any data to justify the UF of 4. You should provide calculations you made based on the %RSD value of the relative response factors to justify using a UF of 4. 𝐴𝐸𝑇 𝜇𝑔 𝑑𝑒𝑣𝑖𝑐𝑒 = 𝐷𝐵𝑇 𝜇𝑔 𝑑𝑒𝑣𝑖𝑐𝑒 𝑈𝐹
  • 22. How Does E&L Work: Identification and Quantification • GC/MS: Electron Ionization (EI) – Literally shooting molecules with an electron machine gun – Highly standardized and reproducible • LC/MS and LC/HRAM – More variable from lab to lab – Atmospheric Pressure Chemical Ionization (APCI±) – Electrospray Ionization (ESI±) – MS is “low resolution” and good for targeted lists – High resolution accurate mass (HRAM) good for screening but requires special expertise
  • 23. Extra Caution Needed with Identifications O O O O O O NIST, Automatic ID Internal DB With Expert Review
  • 24. Extra Caution Needed with Identifications
  • 25. Extra Caution Needed with Identifications Regarding Identifications: • We do not recommend choosing a structure associated with the highest match factor without providing a justification for eliminating other potential matches. • All potential identifications should be provided so that they can be considered in the toxicological risk assessment. • Substances for which only partial structure data is available should be designated as unknown in the test report and for toxicological risk assessment. • If a class of substances is to be listed as the identification, then all potential members of the class should be provided.
  • 26. Extra Caution Needed with Identifications Regarding Identifications: • If a class of substances is to be listed as the identification, then all potential members of the class should be provided. C4 Alkanes: 2 members C5 Alkanes: 3 members C6 Alkanes: 5 members C12 Alkanes: 355 members C32 Alkanes: 27.7 billion members
  • 27. Leachables Studies: When to Conduct Them and How? Typical Extractables Analytical Test Matrix Analytical Method Polar (water) Mid-Polar (IPA) Non-Polar (hexane) Elements ICP/MS and ICP/OES X N/A N/A VOCs Headspace GC/MS X N/A N/A SVOCs Direct Injection GC/MS X X X NVOCs HRAM-UPLC/MS, APCl ± N/A X X NVOCs HRAM-UPLC/MS, APCI/ESI ± X N/A N/A • The device is extracted per ISO 10993 standards – 50 °C for 72 hours – Polar, Mid-Polar, and Non-Polar Solvents • If there are problems, then non-standard conditions can be used – 37 °C for 24 hours – 10% EtOH in water – Other conditions which closely mimic clinical use Even if we know that an extractables study will “fail,” it is still conducted, followed by a leachables (simulated use extractable) study targeted to the problem.
  • 28. Feedback from FDA on Reporting Regarding Reporting, the Following Should be Included: • Calibration data that demonstrates that suitability of the calibration method across the range needed for quantification. • Chromatographic data that includes labeling to discern retention time and relative signal intensity. • Substance information when higher than the AET: – (1) Retention time, (2) proposed identity(ies), (3) chemical name (e.g. IUPAC name), (4) CAS number, (5) structural descriptor (e.g. SMILEs), (6) identification confidence level, (7) type of identification data (e.g. spectra library match), (8) quantification method (e.g. fully quantitative using an authentic standard, semi-quantitative based on a relative response factor, or semi-quantitative using a surrogate response factor), (9) concentration (e.g. in μg/ml), and (10) quantity (μg/device).
  • 29. What the FDA Wants In General:
  • 30. Reports Include- • Introduction and Study Standards: “This is a medical device extractables study conducted per ISO 10993-18:2020” • Photos of the devices before and after extraction 29
  • 36. Conclusion on ChemTox and FDA • It should be understood that ChemTox is often viewed as a requirement and undergoing a period of intense scrutiny by regulators • The process should begin with a collaboration between the toxicologist and the chemistry lab; erring on the side of providing more detail • A detailed testing plan is recommended; this should be given to the FDA as part of their pre-sub program • Goals: Save animal lives, save time, save money, and IMPROVE PATIENT SAFETY!