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An introduction to Synthetic biology: Engineering biology

                           What is synthetic biology?

                           It is an attempt to engineer biology. It is not metablolic
                           engineering, it is not process engineering, it is not
                           cancer cell engineering..it is an approach to make those
                           sort of things. It is not the particular application..it is the
                           method or approach to utilize a particular application. To
                           put it in other words synthetic biology is’nt about
                           making a particular thing.. it is how you make
                           something.

    Drew Endy
Professor, Stanford
    University




     The final goal is to be able to design biological systems in the same way
                engineers design electronic or mechanical systems.
Why do we need it?                  Synthetic Biology




                     Cells are the ultimate Chemical Factory.
Is it achievable?




           1- Biology is hierarchical
Is it achievable?




           2- Biology is Modular
Is it achievable?




         Hierarchy and Modular (recurrent) organization allows biology to be
         understandable and synthetic biology to be possible.
A possible hierarchy for synthetic biology
Synthetic Biology as Engineering

                    Standard Parts




                Parts should not have multiple functions

                (One subunit of T7 phage DNA polymerase is actually E. coli
                thioredoxin)




               Parts should not encode multiple functions
Synthetic Biology as Engineering

                     Standard Parts


Different parts should be compatible




Parts should work in different contexts
Synthetic Biology as Engineering

                     Standard Parts




Standardized parts could be easily exchanged between different devices
(as well as between different laboratories)
Synthetic Biology as Engineering

                        Abstraction




                       Systems



                       Devices



                       Parts



                       DNA            TGCATGCTGATATACGGCTCGAT




Abstraction hierarchies are a human invention designed to assist people in
engineering very complex systems by ignoring unnecessary details.
How the journey began…

iGEM began in 2003 when Drew Endy (now at Stanford University), Tom Knight and
several MIT students spent the month of January trying to design standardized
biological parts to create bacteria that blink on and off like a light switch.




Today, synthetic biology envisions the impossible... from bacterial photography to
biological LCD screens.


SYNTHETIC BIOLOGY IS HAPPENING..AND ITS HAPPENING NOW!

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[iGEM] Synthetic Biology [28 10-2011]

  • 1. An introduction to Synthetic biology: Engineering biology What is synthetic biology? It is an attempt to engineer biology. It is not metablolic engineering, it is not process engineering, it is not cancer cell engineering..it is an approach to make those sort of things. It is not the particular application..it is the method or approach to utilize a particular application. To put it in other words synthetic biology is’nt about making a particular thing.. it is how you make something. Drew Endy Professor, Stanford University The final goal is to be able to design biological systems in the same way engineers design electronic or mechanical systems.
  • 2. Why do we need it? Synthetic Biology Cells are the ultimate Chemical Factory.
  • 3. Is it achievable? 1- Biology is hierarchical
  • 4. Is it achievable? 2- Biology is Modular
  • 5. Is it achievable? Hierarchy and Modular (recurrent) organization allows biology to be understandable and synthetic biology to be possible.
  • 6. A possible hierarchy for synthetic biology
  • 7. Synthetic Biology as Engineering Standard Parts Parts should not have multiple functions (One subunit of T7 phage DNA polymerase is actually E. coli thioredoxin) Parts should not encode multiple functions
  • 8. Synthetic Biology as Engineering Standard Parts Different parts should be compatible Parts should work in different contexts
  • 9. Synthetic Biology as Engineering Standard Parts Standardized parts could be easily exchanged between different devices (as well as between different laboratories)
  • 10. Synthetic Biology as Engineering Abstraction Systems Devices Parts DNA TGCATGCTGATATACGGCTCGAT Abstraction hierarchies are a human invention designed to assist people in engineering very complex systems by ignoring unnecessary details.
  • 11. How the journey began… iGEM began in 2003 when Drew Endy (now at Stanford University), Tom Knight and several MIT students spent the month of January trying to design standardized biological parts to create bacteria that blink on and off like a light switch. Today, synthetic biology envisions the impossible... from bacterial photography to biological LCD screens. SYNTHETIC BIOLOGY IS HAPPENING..AND ITS HAPPENING NOW!