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MAHADEV SHINDHE
ID No:MA1TAE0135
Department of Plant Pathology
COA, Shivamogga
On
Soil Health Paradigms and Implications for
Disease Management
Seminar
Introduction
Definition
Factors influencing soil health
Management practices
Case studies
Conclussion
In one teaspoon of soil there are…
 Bacteria 100 million to 1 billion
 Fungi 6-9 ft fungal strands put end to end
 Protozoa Several thousand flagellates & amoeba
One to several hundred ciliates
 Nematodes 10 to 20 bacterial feeders and a few fungal feeders
 Arthropods Up to 100
 Earthworms 5 or more
Introduction
Definitions
Soil: An ecological system consisting of
inorganic minerals, decomposing organic
matter, living organisms and growing plants
Soil: A farmer's "Silent Partner“
SOIL HEALTH:
• Soil health is a capacity of the soil to function as a vital living
system to sustains biological productivity maintain
environmental quality and promote plant, animal, and human
health.
• “A healthy soil should be capable of supporting life processes
such as plant anchorage and nutrient supply, retain optimal
water and soil properties, support soil food webs, recycle
nutrients, maintain microbial diversity, remediate pollutants,
sequester heavy metals, and contribute to disease suppression”
(Wang and Hooks, 2010).
Properties healthy soil
8
CHARACTERISTICS OF HEALTHY SOILS
 Sufficient supply of nutrients.
 High biological diversity
 Ability to maintain the integrity of nutrient cycling and energy flow
 Suppression of multiple pests and pathogens
 Ability to improve plant health
 Maintenance of water and air quality
 Good soil tilth
 Good internal drainage
 Low populations of parasites
 High populations of plant-health promoting Organisms
 Low weed pressure
 No toxic chemicals that harm plants
Wang and Hooks (2010)
Soil Moisture
Soil Temperature
Soil pH
Organic Matter
Nutrients
Beneficial Microorganisms
Factors influencing soil health
Organic amendments
Crop rotation
Cover crops and Green manures
Soil types
Tillage practices
Intercropping
Factors influencing soil health
Soil health management practices
Manage organic matter
Minimize disturbances
Diversify soil biota
Maintain soil cover
Crop rotation
Cover crops and green manures
Organic amendments
Conservation tillage
Soil health and disease management
Crop rotation
Soil moisture,
pH, temp
Nutrient
management
Organic
amendments
Cover crops
and green
manures
Beneficial
organisms
Conservation
tillage
Soil moistutre
 Pathak and Srivastava (2001) reported that, with increasing
soil moisture and decreasing soil temperature, decreases the
incidence of Rhizoctonia bataticola in sunflower
 Soil Moisture Increase
 Phytophthora spp.
 Rhizoctonia spp.
 Pythium spp.
 Soil Moisture Decrease
 Fusarium spp.
 Verticillium spp.
 Armillaria spp.
Soil pH
• It affects nutrient availability and microbial
activity.
• Most plants and microorganisms prefer a pH
range of 6-7.
• Raising the soil pH to 6.5–7 by using nitrate
nitrogen in place of Ammonical nitrogen will
decrease the development of Fusarium wilt
Potato scab is more severe in soils with pH levels above 5.2.
Below 5.2 the disease is generally suppressed.
Club root of crucifers can be reduced by raising pH(alkaline)
Fusarium wilt disease (i.e. the more acidic the soil, the more
severe the disease).
Takeall of wheat disease- Gaeumannomyces graminis, is
favored by alkaline pH.
Soil pH have a strong effect on infective juveniles
survival.
Survival and pathogenicity nematodes declined slightly
as the soil pH decreased from pH 8 to pH 4.
Acidic soil with pH levels below 4.0 may limit the
nematodes host-finding
(Kung et al., 1990)
SOIL TEMPERATURE
Warm, moist soils with high levels of carbon to nitrogen will
have higher levels of microbial activity and a relatively higher
level of suppression
Most of the soil organisms function best at an optimum soil
temperature of 25 to 35⁰C
Soil temperature can greatly affect the activity of locomotion,
infection and reproduction of nematodes
High temperature can manage- Verticillium spp.
Decreasing soil temperature, decreases the incidence of
Rhizoctonia bataticola
ORGANIC AMENDMENTS
 Animal Manure
 Green Manure (Crop Residues)
 Composts
 Peat
 Blood Meal
 Compost Tea
 Fish Meal
 Poultry Manure
How does compost suppress
disease?
Improves soil physical and chemical properties
 Improve soil structure and fertility
 Enhanced activities of antagonistic microbes
 Increased competition against pathogens for resources that
cause fungistasis
 Release of fungitoxic compounds during organic matter
decomposition
 Induction of systemic resistance in the host plants
Pathogens:
• Fusarium spp.
• Phytophthora spp.
• Pythium spp.
• Rhizoctonia solani
• Sclerotinia spp.
• Sclerotium spp.
• Thielaviopsis basicola
• Verticillium dahliae
CROP ROTATION
• Break disease cycle by
reducing pathogen level
• Alter the soil
characteristics
• Inhibition of pathogens by
chemicals
BENIFICAL CROPS PATHOGEN REDUCED PRECEDING CROP (host)
Rice Verticillium dahliae Cotton
Peas Gaeumannomyces graminis Wheat
Maize , Wheat,
Sorghum
Ralstonia solanacearum Tomato and potato
Legume crops Streptomyces scabis Potato
Ground nut Meloidogyne incognita Tomato
Wheat Heterodera schachtii Sugarbeet
cereals Xanthomonas campestris pv.
campestris
Cabbage
Effect of Rotation on Pathogens
Growing of cover crops:
 Reduce erosion
 Improves the physical condition of soil
 Increase organic matter
 Increase soil microbial diversity by enhancing the soil
microflora.
 Reduce plant diseases
Cover crops:
 Sudangrass, Rye, Rapeseed, Oat, Mustard and Buckwheat
COVER CROPS AND GREEN MANURES
COVER CROPS AND GREEN MANURES
• Sudan grass-Meloidogyne hapla,
Pratylenchus spp.
• Hairy vetch-Thielaviopsis basicola
Pythium spp.
Rhizoctonia solani
Fusarium spp.
Crops suitable for green manuring
 Dhaincha ( Sesbania aculeata),
 Sunhemp (Crotalaria juncea),
 Cowpea (Vigna sinensis),
 Pea (Pisum sativum),
 Berseem (Trifolium alexandrinum),
 Lucerne (Medicago sativa)
Sunhemp Cowpea
26
Dhaincha
CONSERVATION TILLAGE
• Reduced tillage systems accumulate OM and
increase the rate at which soil microfloral and
microfaunal decomposition progresses
• Soils with high levels of OM have been shown
to prevent common root rot of cereals
(Cochliobolus spp)
NUTRIENTs
 Plants suffering a nutrient stress will be more
susceptible to diseases, while adequate crop nutrition
makes plants more tolerant or resistant to disease.
 The nutrient status of the soil and the use of particular
fertilizers and amendments can have significant
impacts on the pathogen’s environment.
 Calcium, play a major role in the ability of the plant to
develop stronger cell walls and tissues.
How can mineral nutrition prevent plant disease?
Mineral nutrition can affect two primary
resistance mechanisms:
A) Formation of
mechanical
barrier (eg.
Thickness of cell
wall )
B ) Synthesis of natural
defence compounds
(eg: phytoalexins ,
antioxidants and
flavanoids)
Nutrient Suppressing
Disease
Crops
Calcium 1)Clubroot
2)Fusarial wilt
3)Damping off
1) Crucifiers
2) Tomato, Watermelon and
cotton.
3) Peanut, Soybean, Pepper,
Tomato, onion, Bean and
Wheat.
Nitrate Fusarium wilt Tomato, Celery and Carnation.
Sulfur Scab Potato
Potassium Verticillium wilt Cotton
Phosphate Fusarium wilt Cotton and Muskmelon
Copper (cu) G. graminis var
tritici
Erysiphe spp.
Alternaria spp.
Take all of wheat ,
Powdery mildew of wheat
Sunflower
(Kausadikar et al ., 2006)
NUTRIENTs in management of plant diseases
Beneficial microorganisms
Nitrogen fixing bacteria
 Rhizobium
 Azotobacter
 Azospirillum
P solublising bacteria
• Bacillus subtilis
• Pseudomonas spp.
Biofertilizers
Bio control agents
 T. harzianum, T. viride ,T. hamatum
 VAM fungi , Bacillus subtilis, Pseudomonas fluorescens
Pathogens:
 Pythium spp.
 Fusarium spp.
 Sclerotium rolfsii
 Rhizoctonia solani
 Macrophomina phaseolina
 Alternaria spp.
 Sclerotinia spp.
 Verticillium spp.
Hyphae of the
beneficial fungus
Trichoderma wrap
around the
pathogenic fungus
Rhizoctonia.
EFFICACY OF SOIL HEALTH MANAGEMENT PRACTICES FOR PLANT
DISEASE MANAGEMENT
Positive effects
Not sufficient to complete control
20 to 80 per cent reduces soil borne diseases
Foliar pathogens diseases
Examples
Rust and mildews
Cont...
• Rhizobacteria: Induced Resistance to foliar and
soil borne disease
• Compost amendments induce resistance through
activation of plant defense response
• Examples: Botrytis Rot, Anthracnose, Angular
Leaf spot.
• Additional control measures for foliar pathogens.
CASE STUDIES
Objective: To know the effect of cropping sequences
on Root Knot Nematode population
OBJECTIVE: The role of microbial activity in the effect
of soil moisture and temperature on disease severity
Dry root weight of wheat seedlings with (a) and without (b)
inoculation with R. solani AG-8, at different soil temperature and
moisture levels.
Objective: To determine the effect of PMR amendments
on soil borne and foliar diseases of cucumber and snap
bean grown on a sandy soil
Objective: To evaluate the efficacy of Brassica cover
crops used as soil amendments for managing
Phytophthora blight of squash
Reduction in Phytophthora blight on squash plants by soil amendments with
shoots (A) or roots (B) of cover crops under greenhouse conditions. Plant
tissues were used to amend infested soils at 1 or 2.5% (plant/soil, w/w).
Objective: to evaluate the effects of compost on bacterial
wilt of potatoes
CONCLUSION
 Management practices that promote soil health by improving
soil physical, chemical, and biological properties, resulting in
improved nutrition, enhanced yield and disease suppression
 Contribute to building active, diverse and potentially disease-
suppressive microbial communities and can provide the base
of a sustainable disease management program
 Biodiversity is important to make management strategies
reliable
 Use of soil health management practices can substantially
reduce soil borne disease problems, but cannot completely
eliminate them, may take time to develop, and should be used
in conjunction with other approaches to achieve sustainable
disease management

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SOIL HEALTH PARADIGM IMPLICATION FOR DISEASE MANAGEMENT

  • 1.
  • 2. MAHADEV SHINDHE ID No:MA1TAE0135 Department of Plant Pathology COA, Shivamogga On Soil Health Paradigms and Implications for Disease Management Seminar
  • 3. Introduction Definition Factors influencing soil health Management practices Case studies Conclussion
  • 4. In one teaspoon of soil there are…  Bacteria 100 million to 1 billion  Fungi 6-9 ft fungal strands put end to end  Protozoa Several thousand flagellates & amoeba One to several hundred ciliates  Nematodes 10 to 20 bacterial feeders and a few fungal feeders  Arthropods Up to 100  Earthworms 5 or more Introduction
  • 5. Definitions Soil: An ecological system consisting of inorganic minerals, decomposing organic matter, living organisms and growing plants Soil: A farmer's "Silent Partner“
  • 6. SOIL HEALTH: • Soil health is a capacity of the soil to function as a vital living system to sustains biological productivity maintain environmental quality and promote plant, animal, and human health. • “A healthy soil should be capable of supporting life processes such as plant anchorage and nutrient supply, retain optimal water and soil properties, support soil food webs, recycle nutrients, maintain microbial diversity, remediate pollutants, sequester heavy metals, and contribute to disease suppression” (Wang and Hooks, 2010).
  • 8. 8
  • 9. CHARACTERISTICS OF HEALTHY SOILS  Sufficient supply of nutrients.  High biological diversity  Ability to maintain the integrity of nutrient cycling and energy flow  Suppression of multiple pests and pathogens  Ability to improve plant health  Maintenance of water and air quality  Good soil tilth  Good internal drainage  Low populations of parasites  High populations of plant-health promoting Organisms  Low weed pressure  No toxic chemicals that harm plants Wang and Hooks (2010)
  • 10. Soil Moisture Soil Temperature Soil pH Organic Matter Nutrients Beneficial Microorganisms Factors influencing soil health
  • 11. Organic amendments Crop rotation Cover crops and Green manures Soil types Tillage practices Intercropping Factors influencing soil health
  • 12. Soil health management practices Manage organic matter Minimize disturbances Diversify soil biota Maintain soil cover Crop rotation Cover crops and green manures Organic amendments Conservation tillage
  • 13. Soil health and disease management Crop rotation Soil moisture, pH, temp Nutrient management Organic amendments Cover crops and green manures Beneficial organisms Conservation tillage
  • 14. Soil moistutre  Pathak and Srivastava (2001) reported that, with increasing soil moisture and decreasing soil temperature, decreases the incidence of Rhizoctonia bataticola in sunflower  Soil Moisture Increase  Phytophthora spp.  Rhizoctonia spp.  Pythium spp.  Soil Moisture Decrease  Fusarium spp.  Verticillium spp.  Armillaria spp.
  • 15. Soil pH • It affects nutrient availability and microbial activity. • Most plants and microorganisms prefer a pH range of 6-7. • Raising the soil pH to 6.5–7 by using nitrate nitrogen in place of Ammonical nitrogen will decrease the development of Fusarium wilt
  • 16. Potato scab is more severe in soils with pH levels above 5.2. Below 5.2 the disease is generally suppressed. Club root of crucifers can be reduced by raising pH(alkaline) Fusarium wilt disease (i.e. the more acidic the soil, the more severe the disease). Takeall of wheat disease- Gaeumannomyces graminis, is favored by alkaline pH.
  • 17. Soil pH have a strong effect on infective juveniles survival. Survival and pathogenicity nematodes declined slightly as the soil pH decreased from pH 8 to pH 4. Acidic soil with pH levels below 4.0 may limit the nematodes host-finding (Kung et al., 1990)
  • 18. SOIL TEMPERATURE Warm, moist soils with high levels of carbon to nitrogen will have higher levels of microbial activity and a relatively higher level of suppression Most of the soil organisms function best at an optimum soil temperature of 25 to 35⁰C Soil temperature can greatly affect the activity of locomotion, infection and reproduction of nematodes High temperature can manage- Verticillium spp. Decreasing soil temperature, decreases the incidence of Rhizoctonia bataticola
  • 19. ORGANIC AMENDMENTS  Animal Manure  Green Manure (Crop Residues)  Composts  Peat  Blood Meal  Compost Tea  Fish Meal  Poultry Manure
  • 20. How does compost suppress disease? Improves soil physical and chemical properties  Improve soil structure and fertility  Enhanced activities of antagonistic microbes  Increased competition against pathogens for resources that cause fungistasis  Release of fungitoxic compounds during organic matter decomposition  Induction of systemic resistance in the host plants
  • 21. Pathogens: • Fusarium spp. • Phytophthora spp. • Pythium spp. • Rhizoctonia solani • Sclerotinia spp. • Sclerotium spp. • Thielaviopsis basicola • Verticillium dahliae
  • 22. CROP ROTATION • Break disease cycle by reducing pathogen level • Alter the soil characteristics • Inhibition of pathogens by chemicals
  • 23. BENIFICAL CROPS PATHOGEN REDUCED PRECEDING CROP (host) Rice Verticillium dahliae Cotton Peas Gaeumannomyces graminis Wheat Maize , Wheat, Sorghum Ralstonia solanacearum Tomato and potato Legume crops Streptomyces scabis Potato Ground nut Meloidogyne incognita Tomato Wheat Heterodera schachtii Sugarbeet cereals Xanthomonas campestris pv. campestris Cabbage Effect of Rotation on Pathogens
  • 24. Growing of cover crops:  Reduce erosion  Improves the physical condition of soil  Increase organic matter  Increase soil microbial diversity by enhancing the soil microflora.  Reduce plant diseases Cover crops:  Sudangrass, Rye, Rapeseed, Oat, Mustard and Buckwheat COVER CROPS AND GREEN MANURES
  • 25. COVER CROPS AND GREEN MANURES • Sudan grass-Meloidogyne hapla, Pratylenchus spp. • Hairy vetch-Thielaviopsis basicola Pythium spp. Rhizoctonia solani Fusarium spp.
  • 26. Crops suitable for green manuring  Dhaincha ( Sesbania aculeata),  Sunhemp (Crotalaria juncea),  Cowpea (Vigna sinensis),  Pea (Pisum sativum),  Berseem (Trifolium alexandrinum),  Lucerne (Medicago sativa) Sunhemp Cowpea 26 Dhaincha
  • 27. CONSERVATION TILLAGE • Reduced tillage systems accumulate OM and increase the rate at which soil microfloral and microfaunal decomposition progresses • Soils with high levels of OM have been shown to prevent common root rot of cereals (Cochliobolus spp)
  • 28. NUTRIENTs  Plants suffering a nutrient stress will be more susceptible to diseases, while adequate crop nutrition makes plants more tolerant or resistant to disease.  The nutrient status of the soil and the use of particular fertilizers and amendments can have significant impacts on the pathogen’s environment.  Calcium, play a major role in the ability of the plant to develop stronger cell walls and tissues.
  • 29. How can mineral nutrition prevent plant disease? Mineral nutrition can affect two primary resistance mechanisms: A) Formation of mechanical barrier (eg. Thickness of cell wall ) B ) Synthesis of natural defence compounds (eg: phytoalexins , antioxidants and flavanoids)
  • 30. Nutrient Suppressing Disease Crops Calcium 1)Clubroot 2)Fusarial wilt 3)Damping off 1) Crucifiers 2) Tomato, Watermelon and cotton. 3) Peanut, Soybean, Pepper, Tomato, onion, Bean and Wheat. Nitrate Fusarium wilt Tomato, Celery and Carnation. Sulfur Scab Potato Potassium Verticillium wilt Cotton Phosphate Fusarium wilt Cotton and Muskmelon Copper (cu) G. graminis var tritici Erysiphe spp. Alternaria spp. Take all of wheat , Powdery mildew of wheat Sunflower (Kausadikar et al ., 2006) NUTRIENTs in management of plant diseases
  • 32. Nitrogen fixing bacteria  Rhizobium  Azotobacter  Azospirillum P solublising bacteria • Bacillus subtilis • Pseudomonas spp. Biofertilizers
  • 33. Bio control agents  T. harzianum, T. viride ,T. hamatum  VAM fungi , Bacillus subtilis, Pseudomonas fluorescens Pathogens:  Pythium spp.  Fusarium spp.  Sclerotium rolfsii  Rhizoctonia solani  Macrophomina phaseolina  Alternaria spp.  Sclerotinia spp.  Verticillium spp.
  • 34. Hyphae of the beneficial fungus Trichoderma wrap around the pathogenic fungus Rhizoctonia.
  • 35. EFFICACY OF SOIL HEALTH MANAGEMENT PRACTICES FOR PLANT DISEASE MANAGEMENT Positive effects Not sufficient to complete control 20 to 80 per cent reduces soil borne diseases Foliar pathogens diseases Examples Rust and mildews
  • 36. Cont... • Rhizobacteria: Induced Resistance to foliar and soil borne disease • Compost amendments induce resistance through activation of plant defense response • Examples: Botrytis Rot, Anthracnose, Angular Leaf spot. • Additional control measures for foliar pathogens.
  • 38. Objective: To know the effect of cropping sequences on Root Knot Nematode population
  • 39.
  • 40.
  • 41. OBJECTIVE: The role of microbial activity in the effect of soil moisture and temperature on disease severity
  • 42. Dry root weight of wheat seedlings with (a) and without (b) inoculation with R. solani AG-8, at different soil temperature and moisture levels.
  • 43. Objective: To determine the effect of PMR amendments on soil borne and foliar diseases of cucumber and snap bean grown on a sandy soil
  • 44.
  • 45.
  • 46. Objective: To evaluate the efficacy of Brassica cover crops used as soil amendments for managing Phytophthora blight of squash
  • 47. Reduction in Phytophthora blight on squash plants by soil amendments with shoots (A) or roots (B) of cover crops under greenhouse conditions. Plant tissues were used to amend infested soils at 1 or 2.5% (plant/soil, w/w).
  • 48.
  • 49. Objective: to evaluate the effects of compost on bacterial wilt of potatoes
  • 50.
  • 51. CONCLUSION  Management practices that promote soil health by improving soil physical, chemical, and biological properties, resulting in improved nutrition, enhanced yield and disease suppression  Contribute to building active, diverse and potentially disease- suppressive microbial communities and can provide the base of a sustainable disease management program  Biodiversity is important to make management strategies reliable  Use of soil health management practices can substantially reduce soil borne disease problems, but cannot completely eliminate them, may take time to develop, and should be used in conjunction with other approaches to achieve sustainable disease management