Integration of biomedical literature and databases

Text mining

Ontologies for life sciences: examples from the gene ontology

Melanie Courtot

Cross-species gene normalization by species inference

Raunak Shrestha

Variant (SNPs/Indels) calling in DNA sequences, Part 1

Denis C. Bauer

Real-time tagging of biomedical entities

Open zika presentation

Sean Ekins

Gene Wiki and Mark2Cure update for BD2K

Benjamin Good

Text mining

Applied text mining

FAIRPORT is an international project to develop a lightweight interoperability architecture for biomedical - and potentially other - data repositories. This slide deck is a presentation to the FAIRPORT technical team. It describes a proposed model for supporting domain-specific search metadata using a common schema model across all repositories. The proposal makes use of the following existing technologies, with minor extensions: - the W3C DCAT model for dataset description - the W3C SKOS knowledge organization system - OWL2 Ontology Language - Dublin Core Vocabulary - NCBO Bioportal biomedical ontologies collection

eXframe: A Semantic Web Platform for Genomic Experiments

Tim Clark

exFrame: a Semantic Web Platform for Genomics Experiments

Tim Clark

Valeria lab 6lv

valrivera

The Gene Ontology & Gene Ontology Annotation resources

Melanie Courtot

Computational Resources In Infectious Disease

João André Carriço

Databases ii

Sucheta Tripathy

Light Intro to the Gene Ontology

nniiicc

Fairport domain specific metadata using w3 c dcat & skos w ontology views

Tim Clark

Gene Ontology Project

vaibhavdeoda

Biomedical text mining

Tendances (20)

Text mining exercise

Text mining

Ontologies for life sciences: examples from the gene ontology

Cross-species gene normalization by species inference

Variant (SNPs/Indels) calling in DNA sequences, Part 1

Real-time tagging of biomedical entities

Open zika presentation

Gene Wiki and Mark2Cure update for BD2K

Text mining

Applied text mining

eXframe: A Semantic Web Platform for Genomic Experiments

exFrame: a Semantic Web Platform for Genomics Experiments

Valeria lab 6lv

The Gene Ontology & Gene Ontology Annotation resources

Computational Resources In Infectious Disease

Databases ii

Light Intro to the Gene Ontology

Fairport domain specific metadata using w3 c dcat & skos w ontology views

Gene Ontology Project

Biomedical text mining

En vedette

Clinical materials for medicine VI

Presentation at Sri Lanka college of venereologists 2011

Many policies and projects now encourage investigators to share their raw research data with other scientists. Unfortunately, it is difficult to measure the effectiveness of these initiatives because data can be shared in such a variety of mechanisms and locations. We propose a novel approach to finding shared datasets: using NLP techniques to identify declarations of dataset sharing within the full text of primary research articles. Using regular expression patterns and machine learning algorithms on open access biomedical literature, our system was able to identify 61% of articles with shared datasets with 80% precision. A simpler version of our classifier achieved higher recall (86%), though lower precision (49%). We believe our results demonstrate the feasibility of this approach and hope to inspire further study of dataset retrieval techniques and policy evaluation.

Piwowar AMIA 2008: Identifying data sharing in biomedical literature

Heather Piwowar

Size estimation of most at risk populations

Indexing of biomedical literature

Sri lankan experience on reduction of hiv stigma and discrimination among hea...

Alexa

xposureomm

En vedette (7)

Clinical materials for medicine VI

Presentation at Sri Lanka college of venereologists 2011

Piwowar AMIA 2008: Identifying data sharing in biomedical literature

Size estimation of most at risk populations

Indexing of biomedical literature

Sri lankan experience on reduction of hiv stigma and discrimination among hea...

Alexa

Similaire à Integration of biomedical literature and databases

Mining literature and medical records

Text mining and data integration

Applied text mining

Network biology: Large-scale data and text mining

Systems biology - Understanding biology at the systems level

The STRING database and related tools

STRING: Large-scale data and text mining

Computational approaches to cell cycle analysis: Current research topics (tho...

Networks of proteins and diseases

Integration of heterogeneous data

Large-scale data and text mining

Systems biology - Bioinformatics on complete biological systems

STRING & related databases: Large-scale integration of heterogeneous data

Large-scale data and text mining - Linking proteins, chemicals, and side effects

Cross-species data integration

Large-scale integration of data and text

Systems biology: Bioinformatics on complete biological system

Integration of biomedical data and electronic publications

Systematic discovery of phosphorylation networks - Combining linear motifs an...

Networks of proteins and diseases

Similaire à Integration of biomedical literature and databases (20)

Mining literature and medical records

Text mining and data integration

Applied text mining

Network biology: Large-scale data and text mining

Systems biology - Understanding biology at the systems level

The STRING database and related tools

STRING: Large-scale data and text mining

Computational approaches to cell cycle analysis: Current research topics (tho...

Networks of proteins and diseases

Integration of heterogeneous data

Large-scale data and text mining

Systems biology - Bioinformatics on complete biological systems

STRING & related databases: Large-scale integration of heterogeneous data

Large-scale data and text mining - Linking proteins, chemicals, and side effects

Cross-species data integration

Large-scale integration of data and text

Systems biology: Bioinformatics on complete biological system

Integration of biomedical data and electronic publications

Systematic discovery of phosphorylation networks - Combining linear motifs an...

Networks of proteins and diseases

Plus de Lars Juhl Jensen

One tagger, many uses: Illustrating the power of dictionary-based named entit...

One tagger, many uses: Simple text-mining strategies for biomedicine

Extract 2.0: Text-mining-assisted interactive annotation

Network visualization: A crash course on using Cytoscape

STRING & STITCH: Network integration of heterogeneous data

Biomedical text mining: Automatic processing of unstructured text

Medical network analysis: Linking diseases and genes through data and text mi...

Network Biology: A crash course on STRING and Cytoscape

Cellular networks

Cellular Network Biology: Large-scale integration of data and text

Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...

Tagger: Rapid dictionary-based named entity recognition

Network Biology: Large-scale integration of data and text

Medical text mining: Linking diseases, drugs, and adverse reactions

Network biology: Large-scale integration of data and text

Medical data and text mining: Linking diseases, drugs, and adverse reactions

Cellular Network Biology

Network biology: Large-scale integration of data and text

Biomarker bioinformatics: Network-based candidate prioritization

The Art of Counting: Scoring and ranking co-occurrences in literature

As privacy and data protection regulations evolve rapidly, organizations operating in multiple jurisdictions face mounting challenges to ensure compliance and safeguard customer data. With state-specific privacy laws coming up in multiple states this year, it is essential to understand what their unique data protection regulations will require clearly. How will data privacy evolve in the US in 2024? How to stay compliant? Our panellists will guide you through the intricacies of these states' specific data privacy laws, clarifying complex legal frameworks and compliance requirements. This webinar will review: - The essential aspects of each state's privacy landscape and the latest updates - Common compliance challenges faced by organizations operating in multiple states and best practices to achieve regulatory adherence - Valuable insights into potential changes to existing regulations and prepare your organization for the evolving landscape

Plus de Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...

One tagger, many uses: Simple text-mining strategies for biomedicine

Extract 2.0: Text-mining-assisted interactive annotation

Network visualization: A crash course on using Cytoscape

STRING & STITCH: Network integration of heterogeneous data

Biomedical text mining: Automatic processing of unstructured text

Medical network analysis: Linking diseases and genes through data and text mi...

Network Biology: A crash course on STRING and Cytoscape

Cellular networks

Cellular Network Biology: Large-scale integration of data and text

Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...

Tagger: Rapid dictionary-based named entity recognition

Network Biology: Large-scale integration of data and text

Medical text mining: Linking diseases, drugs, and adverse reactions

Network biology: Large-scale integration of data and text

Medical data and text mining: Linking diseases, drugs, and adverse reactions

Cellular Network Biology

Network biology: Large-scale integration of data and text

Biomarker bioinformatics: Network-based candidate prioritization

The Art of Counting: Scoring and ranking co-occurrences in literature

Dernier

TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments

TrustArc

Emergent Methods: Multi-lingual narrative tracking in the news - real-time ex...

Zilliz

Three things you will take away from the session: • How to run an effective tenant-to-tenant migration • Best practices for before, during, and after migration • Tips for using migration as a springboard to prepare for Copilot in Microsoft 365 Main ideas: Migration Overview: The presentation covers the current reality of cross-tenant migrations, the triggers, phases, best practices, and benefits of a successful tenant migration Considerations: When considering a migration, it is important to consider the migration scope, performance, customization, flexibility, user-friendly interface, automation, monitoring, support, training, scalability, data integrity, data security, cost, and licensing structure Next Wave: The next wave of change includes the launch of Copilot, which requires businesses to be prepared for upcoming changes related to Copilot and the cloud, and to consolidate data and tighten governance ShareGate: ShareGate can help with pre-migration analysis, configurable migration tool, and automated, end-user driven collaborative governance

Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff

sammart93

FWD Group - Insurer Innovation Award 2024

The Digital Insurer

In the thrilling conclusion to 2023, ransomware groups had a banner year, really outdoing themselves in the "make everyone's life miserable" department. LockBit 3.0 took gold in the hacking olympics, followed by the plucky upstarts Clop and ALPHV/BlackCat. Apparently, 48% of organizations were feeling left out and decided to get in on the cyber attack action. Business services won the "most likely to get digitally mugged" award, with education and retail nipping at their heels. Hackers expanded their repertoire beyond boring old encryption to the much more exciting world of extortion. The US, UK and Canada took top honors in the "countries most likely to pay up" category. Bitcoins were the currency of choice for discerning hackers, because who doesn't love untraceable money?

Ransomware_Q4_2023. The report. [EN].pdf

Overkill Security

Artificial Intelligence Chap.5 : Uncertainty

Khushali Kathiriya

presentation ICT roal in 21st century education

jfdjdjcjdnsjd

A Beginners Guide to Building a RAG App Using Open Source Milvus

Zilliz

Boost Fertility New Invention Ups Success Rates.pdf

sudhanshuwaghmare1

The Good, the Bad and the Governed - Why is governance a dirty word? David O'Neill, Chief Operating Officer - APIContext Apidays New York 2024: The API Economy in the AI Era (April 30 & May 1, 2024) ------ Check out our conferences at https://www.apidays.global/ Do you want to sponsor or talk at one of our conferences? https://apidays.typeform.com/to/ILJeAaV8 Learn more on APIscene, the global media made by the community for the community: https://www.apiscene.io Explore the API ecosystem with the API Landscape: https://apilandscape.apiscene.io/

Apidays New York 2024 - The Good, the Bad and the Governed by David O'Neill, ...

The value of a flexible API Management solution for Open Banking Steve Melan, Manager for IT Innovation and Architecture - State's and Saving's Bank of Luxembourg Apidays New York 2024: The API Economy in the AI Era (April 30 & May 1, 2024) ------ Check out our conferences at https://www.apidays.global/ Do you want to sponsor or talk at one of our conferences? https://apidays.typeform.com/to/ILJeAaV8 Learn more on APIscene, the global media made by the community for the community: https://www.apiscene.io Explore the API ecosystem with the API Landscape: https://apilandscape.apiscene.io/

Apidays New York 2024 - The value of a flexible API Management solution for O...

Scalable LLM APIs for AI and Generative AI Application Development Ettikan Karuppiah, Director/Technologist - NVIDIA Apidays Singapore 2024: Connecting Customers, Business and Technology (April 17 & 18, 2024) ------ Check out our conferences at https://www.apidays.global/ Do you want to sponsor or talk at one of our conferences? https://apidays.typeform.com/to/ILJeAaV8 Learn more on APIscene, the global media made by the community for the community: https://www.apiscene.io Explore the API ecosystem with the API Landscape: https://apilandscape.apiscene.io/

Apidays Singapore 2024 - Scalable LLM APIs for AI and Generative AI Applicati...

Accelerating FinTech Innovation: Unleashing API Economy and GenAI Vasa Krishnan, Chief Technology Officer - FinResults Apidays New York 2024: The API Economy in the AI Era (April 30 & May 1, 2024) ------ Check out our conferences at https://www.apidays.global/ Do you want to sponsor or talk at one of our conferences? https://apidays.typeform.com/to/ILJeAaV8 Learn more on APIscene, the global media made by the community for the community: https://www.apiscene.io Explore the API ecosystem with the API Landscape: https://apilandscape.apiscene.io/

Apidays New York 2024 - Accelerating FinTech Innovation by Vasa Krishnan, Fin...

Sidekick Solutions uses Bonterra Impact Management (fka Social Solutions Apricot) and automation solutions to integrate data for business workflows. We believe integration and automation are essential to user experience and the promise of efficient work through technology. Automation is the critical ingredient to realizing that full vision. We develop integration products and services for Bonterra Case Management software to support the deployment of automations for a variety of use cases. This video focuses on the deployment of external web forms using Jotform for Bonterra Impact Management. This solution can be customized to your organization’s needs and deployed to support the common use cases below: - Intake and consent - Assessments - Surveys - Applications - Program registration Interested in deploying web form automations for Bonterra Impact Management? Contact us at sales@sidekicksolutionsllc.com to discuss next steps.

Web Form Automation for Bonterra Impact Management (fka Social Solutions Apri...

Jeffrey Haguewood

How to Troubleshoot Apps for the Modern Connected Worker

ThousandEyes

2024: Domino Containers - The Next Step. News from the Domino Container commu...

Martijn de Jong

Data Cloud, More than a CDP by Matt Robison

Anna Loughnan Colquhoun

Modernizing Securities Finance: The cloud-native prime brokerage platform transforming capital markets. Madhu Subbu, Managing Director, Head of Securities Finance Engineering Apidays Singapore 2024: Connecting Customers, Business and Technology (April 17 & 18, 2024) ------ Check out our conferences at https://www.apidays.global/ Do you want to sponsor or talk at one of our conferences? https://apidays.typeform.com/to/ILJeAaV8 Learn more on APIscene, the global media made by the community for the community: https://www.apiscene.io Explore the API ecosystem with the API Landscape: https://apilandscape.apiscene.io/

Apidays Singapore 2024 - Modernizing Securities Finance by Madhu Subbu