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Effect of Topology on Diversity of
Spatially-Structured Evolutionary
            Algorithms
M. De Felice - Energy and Environment Modelling Unit@ENEA, Rome, Italy

S. Meloni - Institute for Biocomputation and Physics of Complex
Systems@University of Zaragoza, Zaragoza, Spain

S. Panzieri - Dept. Informatica e Automazione@ROMA TRE University,
Rome, Italy
Outline

What are Spatially-Structured EAs (SSEAs)

Why studying SSEAs?

Experimentations

And now?
SSEAs
EA where ‘interaction’ is graph-based

Cellular Genetic Algorithms are SSEAs


Classic EA                   SSEA



                }
 Individual 1               Individual 1

 Individual 2
 Individual 3   Selection
                            Individual 2   Individual 3
     ...
 Individual N
                            Individual 4
Original Idea

         Panzieri et al., A Spatially Structured Genetic Algorithm over
         Complex Networks for Mobile Robot Localisation, IEEE Int. Conf.
         on Robotics and Automation (ICRA), 2007




Adding a ‘structure’ seemed to improve the diversity
                   of hypothesis
-2                             2
                           2



Robotic Localization
-4

             (a)
                       2       4



-6                             6

 6                                 6



         1
 4                                 4



 2           1                     2



 0                                 0

                   2
-2                             -2
                           2

-4                             -4

             (b)

-6                             -6
  6                             6
Epidemic Spreading
Compartmental models [1920s] used to model
epidemic spreading with differential equations

                            µ
    S               I               R
Epidemic Spreading
 Compartmental models [1920s] used to model
 epidemic spreading with differential equations

                                 µ
      S                  I                 R

Epidemic Spreading on Networks (see S.Meloni
et al., traffic-driven epidemic spreading in finite-size
scale-free networks, PNAS, 2009)
Main Questions
Main Questions
1. Can we model EAs as Spreading
   Processes?
Main Questions
1. Can we model EAs as Spreading
   Processes?

2. How graph topology influences
   diversity?
Main Questions
1. Can we model EAs as Spreading
   Processes?

2. How graph topology influences
   diversity?

3. Can we use analytic tools used in
   Epidemic Spreading to investigate
   EAs dynamics?
SSEA as Spreading
        Process
Analogy between SI (Susceptible-Infectious) model
and EA
                                            γ
               S                  I                      S

         Non-Optimal           Optimal                Elitism?




J.L. Payne & M.J. Eppstein, Pair Approximations of
Takeover Dynamics in Regular Population Structures,
         Evolutionary Computation, 2009
Our Algorithm
                     1. start with random solutions
                     in nodes
                     while (!terminate)
                        for each individual i
                           2. select uniformly a random
                           neighbour
                           3. mutate it
                           4. if it’s better or equal than i use it
                           to replace i
                        end
                     end




No Diversity Maintenance Mechanisms!
Proposed problem
NMAX: Combinatorial problem                              8


                                                         7


                                                         6


                                                         5




                                                fitness
                                                         4




Composition of L TWOMAX functions of
                                                         3


                                                         2


                                                         1


                                                         0
                                                             0   1   2   3    4     5   6   7   8




length b                                                                     Ones




       10010100|00011000|... |11100101




                                   }
         }
    first TWOMAX of length b   k-th TWOMAX of length b




                                      2L optima
Experimentations
10000 individuals (i.e. 10000 nodes)

Measuring First Hitting Time (FHT), generation of fitness
convergence (FCT) and n. of optima found (N.OPT.)
[average on 100 runs]

Panmictic (traditional), Random Graph (Erdös-Rényi) and
Lattice 1-D (2-neighbours)
Experimentations - 2
Entropies



Genotypic Entropy                       Phenotypic Entropy

1. Random and Panmictic go     All the topologies converge at
quickly to the same solution         the optimal fitness value
2. Lattice 1D ‘converges’ to
several optima
Some numbers
 Larger genotype leads to...
   ...slower convergence
        ...less diversity
Some numbers
  Larger genotype leads to...
    ...slower convergence
         ...less diversity




What happens in-between?
Watts-Strogatz
   Small-World model



Landmark paper: D.J. Watts & S.H. Strogatz,
Collective dynamics of ‘small-world’ networks,
Nature, 1998

Rewiring probability parameter r
0 -> Regular Graph (lattice)
1 -> Random Network
Rewiring and APL
Average Path Length (APL) is the average
length of all the shortest paths

APL measures the spreading of information on
a network
Rewiring Factor
Rewiring Factor
Rewiring Factor - 2
Conclusions
Conclusions
We investigated the relationship between
network topology and SSEA dynamics
Conclusions
We investigated the relationship between
network topology and SSEA dynamics

This is a first step...
Conclusions
We investigated the relationship between
network topology and SSEA dynamics

This is a first step...

  ...to study how to design an ad-hoc network
  for a specific problem
Conclusions
We investigated the relationship between
network topology and SSEA dynamics

This is a first step...

  ...to study how to design an ad-hoc network
  for a specific problem

  ...to apply Epidemic Spreading formalisms
  to SSEAs
Thank you



Download Networks Data
www.matteodefelice.name/research/resources/

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Gecco 2011 - Effects of Topology on the diversity of spatially-structured evolutionary algorithms

  • 1. Effect of Topology on Diversity of Spatially-Structured Evolutionary Algorithms M. De Felice - Energy and Environment Modelling Unit@ENEA, Rome, Italy S. Meloni - Institute for Biocomputation and Physics of Complex Systems@University of Zaragoza, Zaragoza, Spain S. Panzieri - Dept. Informatica e Automazione@ROMA TRE University, Rome, Italy
  • 2. Outline What are Spatially-Structured EAs (SSEAs) Why studying SSEAs? Experimentations And now?
  • 3. SSEAs EA where ‘interaction’ is graph-based Cellular Genetic Algorithms are SSEAs Classic EA SSEA } Individual 1 Individual 1 Individual 2 Individual 3 Selection Individual 2 Individual 3 ... Individual N Individual 4
  • 4. Original Idea Panzieri et al., A Spatially Structured Genetic Algorithm over Complex Networks for Mobile Robot Localisation, IEEE Int. Conf. on Robotics and Automation (ICRA), 2007 Adding a ‘structure’ seemed to improve the diversity of hypothesis
  • 5. -2 2 2 Robotic Localization -4 (a) 2 4 -6 6 6 6 1 4 4 2 1 2 0 0 2 -2 -2 2 -4 -4 (b) -6 -6 6 6
  • 6. Epidemic Spreading Compartmental models [1920s] used to model epidemic spreading with differential equations µ S I R
  • 7. Epidemic Spreading Compartmental models [1920s] used to model epidemic spreading with differential equations µ S I R Epidemic Spreading on Networks (see S.Meloni et al., traffic-driven epidemic spreading in finite-size scale-free networks, PNAS, 2009)
  • 9. Main Questions 1. Can we model EAs as Spreading Processes?
  • 10. Main Questions 1. Can we model EAs as Spreading Processes? 2. How graph topology influences diversity?
  • 11. Main Questions 1. Can we model EAs as Spreading Processes? 2. How graph topology influences diversity? 3. Can we use analytic tools used in Epidemic Spreading to investigate EAs dynamics?
  • 12. SSEA as Spreading Process Analogy between SI (Susceptible-Infectious) model and EA γ S I S Non-Optimal Optimal Elitism? J.L. Payne & M.J. Eppstein, Pair Approximations of Takeover Dynamics in Regular Population Structures, Evolutionary Computation, 2009
  • 13. Our Algorithm 1. start with random solutions in nodes while (!terminate) for each individual i 2. select uniformly a random neighbour 3. mutate it 4. if it’s better or equal than i use it to replace i end end No Diversity Maintenance Mechanisms!
  • 14. Proposed problem NMAX: Combinatorial problem 8 7 6 5 fitness 4 Composition of L TWOMAX functions of 3 2 1 0 0 1 2 3 4 5 6 7 8 length b Ones 10010100|00011000|... |11100101 } } first TWOMAX of length b k-th TWOMAX of length b 2L optima
  • 15. Experimentations 10000 individuals (i.e. 10000 nodes) Measuring First Hitting Time (FHT), generation of fitness convergence (FCT) and n. of optima found (N.OPT.) [average on 100 runs] Panmictic (traditional), Random Graph (Erdös-Rényi) and Lattice 1-D (2-neighbours)
  • 17. Entropies Genotypic Entropy Phenotypic Entropy 1. Random and Panmictic go All the topologies converge at quickly to the same solution the optimal fitness value 2. Lattice 1D ‘converges’ to several optima
  • 18. Some numbers Larger genotype leads to... ...slower convergence ...less diversity
  • 19. Some numbers Larger genotype leads to... ...slower convergence ...less diversity What happens in-between?
  • 20. Watts-Strogatz Small-World model Landmark paper: D.J. Watts & S.H. Strogatz, Collective dynamics of ‘small-world’ networks, Nature, 1998 Rewiring probability parameter r 0 -> Regular Graph (lattice) 1 -> Random Network
  • 21. Rewiring and APL Average Path Length (APL) is the average length of all the shortest paths APL measures the spreading of information on a network
  • 26. Conclusions We investigated the relationship between network topology and SSEA dynamics
  • 27. Conclusions We investigated the relationship between network topology and SSEA dynamics This is a first step...
  • 28. Conclusions We investigated the relationship between network topology and SSEA dynamics This is a first step... ...to study how to design an ad-hoc network for a specific problem
  • 29. Conclusions We investigated the relationship between network topology and SSEA dynamics This is a first step... ...to study how to design an ad-hoc network for a specific problem ...to apply Epidemic Spreading formalisms to SSEAs
  • 30. Thank you Download Networks Data www.matteodefelice.name/research/resources/

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