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Mapping Physiological Heterogeneities
in Biofilms

   Naveen Sinha
   J Wilking, A Seminara, D Weitz, and M Brenner
   Harvard School of Engineering and Applied Sciences
Despite being genetically identical,
cells differentiate into different types.




                                            Lopez 2010
We can use fluorescent reporters to visually
identify different cell types.




                                               Lopez 2010
Can we quantitatively describe when and where
cell types become active?




 8 hours     16 hours    24 hours    32 hours
Can the locations and timing of cell types
be explained by only nutrients?




                                             Lopez 2010
…or are chemical signals also needed to explain
the patterns that form?




                                           Lopez 2010
We can azimuthally average the intensity to
simplify to one dimension.



              Intensity




                          Radial distance
Each image is transformed into a two
dimensional plot…




        8 hours       16 hours       24 hours       32 hours
CFP (matrix)




                  R              R              R              R
Each image is transformed into a two
dimensional plot…

      Matrix production      Spore production




         radius ( m)            radius ( m)
Are the peaks in gene expression levels
      correlated with the nutrient concentrations?


   CFP
(matrix)
                     R              R              R                     R




           8 hours       16 hours       24 hours       32 hours

                                                       Agnese Seminara

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121130 NECFW Sound Bite

  • 1. Mapping Physiological Heterogeneities in Biofilms Naveen Sinha J Wilking, A Seminara, D Weitz, and M Brenner Harvard School of Engineering and Applied Sciences
  • 2.
  • 3. Despite being genetically identical, cells differentiate into different types. Lopez 2010
  • 4. We can use fluorescent reporters to visually identify different cell types. Lopez 2010
  • 5. Can we quantitatively describe when and where cell types become active? 8 hours 16 hours 24 hours 32 hours
  • 6. Can the locations and timing of cell types be explained by only nutrients? Lopez 2010
  • 7. …or are chemical signals also needed to explain the patterns that form? Lopez 2010
  • 8. We can azimuthally average the intensity to simplify to one dimension. Intensity Radial distance
  • 9. Each image is transformed into a two dimensional plot… 8 hours 16 hours 24 hours 32 hours CFP (matrix) R R R R
  • 10. Each image is transformed into a two dimensional plot… Matrix production Spore production radius ( m) radius ( m)
  • 11. Are the peaks in gene expression levels correlated with the nutrient concentrations? CFP (matrix) R R R R 8 hours 16 hours 24 hours 32 hours Agnese Seminara