ContentMine can read the daily scientific literature and extract facts. This talk was given to the OpenPlant project - with whom ContentMine collaborate at a meeting on 2016-07-25/27 in Norwich. Examples of extracted facts are given.
300003-World Science Day For Peace And Development.pptx
Mining the scientific literature for plants and chemistry
1. Mining science from the plant
literature
ContentMine
Open Plant Forum, Norwich,
UK, 2016-07-27
Peter Murray-Rust
[1]University of Cambridge [2]TheContentMine
10,000 scholarly publications every day.
How many relate to plants?
2. (2x digital music industry!)
Non-profit
Downloading several thousand
papers per day and making search
results open for everyone
http://contentmine.org
Downloadable Open source
33. of plant-microbe interactions. Richard Smith-Unna, PhD student, Plant Sci
Cambridge. Peter Murray-Rust, a (retired but highly active) chemist in Cam
University.
Report of 2-day workshop (hack) held at TGAC 2016-03-10/11
The workshop centered on novel methods for discovering information ab
from the existing literature (“Content Mining”). We prepared ContentMin
specifically for the workshop on the basis that “anyone can run it and get
“. Everyone was asked to install the software on whatever platform they c
used (Mac, Windows, Unix). There were few problems and most people w
within an hour. A typical example was “find all you can about diseases of o
EuropePubMedCentral (with over 1 million Open Access papers). This retr
500 papers, which were further filtered for chemicals, diseases, species, e
displayed within a minute or two, significantly increasing the speed of kno
driven scientific discovery. We also jointly made considerable improveme
software and have agreed to meet regularly to take this forward.
![Mining science from the plant
literature
ContentMine
Open Plant Forum, Norwich,
UK, 2016-07-27
Peter Murray-Rust
[1]University of Cambridge [2]TheContentMine
10,000 scholarly publications every day.
How many relate to plants?](https://image.slidesharecdn.com/openplant2016murrayrust-160727113547/85/Mining-the-scientific-literature-for-plants-and-chemistry-1-320.jpg)
