Slides for EVE161 at UC Davis. "Microbial Phylogenomics" Taught by Jonathan Eisen and Cassie Ettinger. Winter 2018.

1. EVE 161:
Microbial Phylogenomics
Class #7:
Era II: rRNA from the Environment
UC Davis, Winter 2018
Instructor: Jonathan Eisen
Teaching Assistant: Cassie Ettinger
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3. Presenters for Today?

4. Terminology and Questions?

5. Differences Between the Papers?

6. Paper #1
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7. Lane et al. Abstract
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8. Lane et al. Background: Why Sequences?
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Lane et al. Background: Why Sequences?

10. Lane et al. Background: Why rRNA
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Lane et al. Background: Why rRNA

12. Lane et al. Methods: How Get RNA
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13. Methods: How Make Primers
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14. Methods: Reverse Transcriptase
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15. Methods: Nucleotides
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16. Methods: Sequencing
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17. Results and Discussion
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18. Priming
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19. Priming
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20. Priming
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21. Errors
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22. Errors
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23. Alignment
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24. Phylogeny
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29. Stahl et al. Abstract
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Stahl et al. Introduction

31. Stahl et al. Introduction

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Stahl et al. Introduction

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34. Stahl et al. Methods
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Stahl et al. Methods

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Stahl et al. Methods

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Stahl et al. Methods

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion