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Gene$c	
  varia$on	
  in	
  resistance	
  to	
  
Pacific	
  oyster	
  mortality	
  
syndrome	
  
Peter	
  Kube	
  (CSIRO)	
  
Ma?hew	
  Cunningham	
  (ASI)	
  
Mike	
  Dove	
  (NSW	
  DPI)	
  
Wayne	
  O’Connor	
  (NSW	
  DPI)	
  
Paul	
  Hick	
  (NSW	
  DPI)	
  
Presenta$on	
  to	
  Shellfish	
  Futures	
  2012	
  17-­‐19	
  August	
  2012	
  
Port	
  Arthur	
  Tasmania	
  
Tray	
  1	
  
Tray	
  9	
  
Woolooware Bay, Georges River (24 May 2012)
ASI	
  gene$cs	
  trial	
   University	
  of	
  Sydney	
  trial	
  
Large	
  varia$on	
  in	
  survival	
  along	
  rack	
  
34%
32%
33%
20%
17%
14%
33%
32%
20%
43%
43%
43%
71%
37%
54%
69%
58%
53%
49%
62%
74%
58%
82%
78%
51%
56%
61%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
AVERAGE	
  SURVIVAL	
  =	
  47%	
  
Survival	
  aZer	
  14	
  days	
  (26	
  April	
  2012)	
  
Tray	
  1	
  
Tray	
  9	
  
Some	
  varia$on	
  in	
  survival	
  across	
  rack	
  
AVERAGE	
  SURVIVAL	
  =	
  47%	
  
Survival	
  aZer	
  14	
  days	
  (26	
  April	
  2012)	
  
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
4 4 %
4 4 %
4 6 % 4 6 %
4 6 %
4 4 %
4 2 % 4 2 %
4 2 %
4 2 %
42% 4 2 %
5 3 % 5 3 %
5 3 %
4 9 % 4 9 %
4 9 %
4 4 %
44% 4 4 %
4 6 %
46% 4 6 %
5 3 %
53% 5 3 %
4 9 %
49% 4 9 %
5 3 %
4 9 %
4 4 %
4 6 %
4 2 %
5 3 %
4 9 %
4 4 %
4 6 %
4 2 %
4 4 %
5 3 %
4 9 %
4 6 %
4 2 %
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
3
4
2
8
4
2 2
1
0
2
1
4
5 8
1
5
3
2
5
1
2
9
2
5
1
2
4
7
1
3
4
3
2
6
1
8 3
1
9
1
6
3
0
2
0
2
3
2
4
3
6 7 9 5
1
1
1
7
3
5
4
9
5
0
4
1
4
8 1 4
2
2 6
2
7
3
3
S
U
R
V
IV
A
L	
  EB
V
FAMILY	
  NUMBER
Estimated	
  Breeding	
  Value	
  for	
  Survival:	
  2011	
  Year	
  Class	
  Families
Heritability	
  =	
  0.38	
  	
  	
  	
  	
  þ	
  
A	
  group	
  of	
  cousins	
  	
  	
  	
  þ	
  
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
34
28
42
2
10
21
45
8
15
32
51
29
25
12
47
13
43
26
18
3
19
16
30
20
23
24
36
7
9
5
11
17
35
49
50
41
48
1
4
22
6
27
33
SURVIVAL	
  EBV
FAMILY	
  NUMBER
Estimated	
  Breeding	
  Value	
  for	
  Survival:	
  2011	
  Year	
  Class	
  Families
A	
  group	
  of	
  cousins	
  	
  	
  	
  ý	
  
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
3
4
2
8
4
2 2
1
0
2
1
4
5 8
1
5
3
2
5
1
2
9
2
5
1
2
4
7
1
3
4
3
2
6
1
8 3
1
9
1
6
3
0
2
0
2
3
2
4
3
6 7 9 5
1
1
1
7
3
5
4
9
5
0
4
1
4
8 1 4
2
2 6
2
7
3
3
S
U
R
V
IV
A
L	
  EB
V
FAMILY	
  NUMBER
Estimated	
  Breeding	
  Value	
  for	
  Survival:	
  2011	
  Year	
  Class	
  Families
FAMILY	
  2009003 FAMILY	
  2009025 FAMILY	
  2009027
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
IN
D
IV
ID
U
A
L	
  S
U
R
V
IV
A
L	
  E
B
V
Within	
  Family	
  Variation	
   (3	
  selected	
  families	
  only)	
  
Survival:	
  present	
  popula$on	
  
34%
32%
33%
20%
17%
14%
33%
32%
20%
43%
43%
43%
71%
37%
54%
69%
58%
53%
49%
62%
74%
58%
82%
78%
51%
56%
61%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
AVERAGE	
  SURVIVAL	
  =	
  47%	
  
Survival	
  in	
  2012	
  
Survival:	
  best	
  families	
  
SURVIVAL	
  IMPROVEMENT	
  =	
  47%	
  to	
  ~70%	
  
Predicted	
  survival	
  in	
  2014	
  
60%
59%
60%
52%
50%
48%
60%
59%
52%
66%
66%
66%
83%
62%
72%
81%
75%
72%
69%
77%
84%
75%
89%
87%
71%
73%
77%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
Survival:	
  best	
  individuals	
  and	
  best	
  families	
  
SURVIVAL	
  IMPROVEMENT	
  =	
  47%	
  to	
  ~80%	
  
Predicted	
  survival	
  in	
  2014	
  
73%
73%
73%
68%
67%
65%
73%
73%
68%
77%
77%
77%
88%
75%
82%
88%
83%
81%
79%
85%
90%
83%
93%
91%
81%
82%
84%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
Survival:	
  higher	
  disease	
  severity	
  
ASSUMED	
  AVERAGE	
  SURVIVAL	
  =	
  25%	
  
	
  
18%
17%
17%
11%
9%
7%
17%
17%
10%
23%
23%
23%
38%
19%
29%
37%
31%
28%
26%
33%
39%
31%
43%
42%
27%
30%
32%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
Survival:	
  best	
  families	
  and	
  higher	
  disease	
  
severity	
  
SURVIVAL	
  IMPROVEMENT	
  =	
  25%	
  to	
  40%	
  
Predicted	
  survival	
  in	
  2014	
  
	
  
28%
27%
28%
17%
14%
12%
28%
27%
17%
36%
36%
37%
60%
31%
46%
58%
49%
45%
41%
53%
63%
50%
69%
67%
44%
47%
52%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
Survival:	
  best	
  individuals	
  from	
  best	
  families	
  
and	
  higher	
  disease	
  severity	
  
SURVIVAL	
  IMPROVEMENT	
  =	
  25%	
  to	
  
50%	
  
Predicted	
  survival	
  in	
  2014	
  
42%
40%
41%
33%
31%
29%
41%
41%
33%
48%
48%
48%
66%
44%
55%
65%
57%
54%
52%
60%
68%
58%
73%
71%
53%
56%
59%
Replicate 1 Replicate 2 Replicate 3
Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
The	
  main	
  messages	
  
•  Gene$c	
  selec$on	
  will	
  improve	
  resistance	
  
•  But	
  it	
  is	
  most	
  likely	
  a	
  medium	
  term	
  solu$on	
  
•  S$ll	
  lots	
  to	
  learn	
  about	
  the	
  gene$c	
  inheritance	
  
of	
  this	
  disease	
  
Acknowledgements	
  
•  The	
  trial	
  site	
  was	
  provided	
  by	
  Drakes	
  Oysters	
  and	
  this	
  work	
  
would	
  not	
  have	
  been	
  possible	
  without	
  the	
  assistance	
  of	
  Bob	
  
Drake,	
  Ted	
  Drake	
  and	
  Len	
  Drake	
  
•  This	
  study	
  was	
  done	
  as	
  part	
  of	
  the	
  Seafood	
  CRC	
  and	
  was	
  made	
  
possible	
  with	
  funding	
  assistance	
  by	
  the	
  Seafood	
  CRC	
  
•  Richard	
  Whiengton	
  and	
  Ika	
  Paul-­‐Pont	
  (University	
  of	
  Sydney)	
  
have	
  helped	
  out	
  by	
  generously	
  sharing	
  their	
  knowledge	
  and	
  
experience	
  	
  

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Kube et-al-os hv-1-genetic-variation-shellfish-futures-aug-2012-2

  • 1. Gene$c  varia$on  in  resistance  to   Pacific  oyster  mortality   syndrome   Peter  Kube  (CSIRO)   Ma?hew  Cunningham  (ASI)   Mike  Dove  (NSW  DPI)   Wayne  O’Connor  (NSW  DPI)   Paul  Hick  (NSW  DPI)   Presenta$on  to  Shellfish  Futures  2012  17-­‐19  August  2012   Port  Arthur  Tasmania  
  • 2.
  • 4. Woolooware Bay, Georges River (24 May 2012) ASI  gene$cs  trial   University  of  Sydney  trial  
  • 5. Large  varia$on  in  survival  along  rack   34% 32% 33% 20% 17% 14% 33% 32% 20% 43% 43% 43% 71% 37% 54% 69% 58% 53% 49% 62% 74% 58% 82% 78% 51% 56% 61% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9 AVERAGE  SURVIVAL  =  47%   Survival  aZer  14  days  (26  April  2012)  
  • 7. Some  varia$on  in  survival  across  rack   AVERAGE  SURVIVAL  =  47%   Survival  aZer  14  days  (26  April  2012)   Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9 4 4 % 4 4 % 4 6 % 4 6 % 4 6 % 4 4 % 4 2 % 4 2 % 4 2 % 4 2 % 42% 4 2 % 5 3 % 5 3 % 5 3 % 4 9 % 4 9 % 4 9 % 4 4 % 44% 4 4 % 4 6 % 46% 4 6 % 5 3 % 53% 5 3 % 4 9 % 49% 4 9 % 5 3 % 4 9 % 4 4 % 4 6 % 4 2 % 5 3 % 4 9 % 4 4 % 4 6 % 4 2 % 4 4 % 5 3 % 4 9 % 4 6 % 4 2 %
  • 8. 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 3 4 2 8 4 2 2 1 0 2 1 4 5 8 1 5 3 2 5 1 2 9 2 5 1 2 4 7 1 3 4 3 2 6 1 8 3 1 9 1 6 3 0 2 0 2 3 2 4 3 6 7 9 5 1 1 1 7 3 5 4 9 5 0 4 1 4 8 1 4 2 2 6 2 7 3 3 S U R V IV A L  EB V FAMILY  NUMBER Estimated  Breeding  Value  for  Survival:  2011  Year  Class  Families Heritability  =  0.38          þ  
  • 9. A  group  of  cousins        þ   0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 34 28 42 2 10 21 45 8 15 32 51 29 25 12 47 13 43 26 18 3 19 16 30 20 23 24 36 7 9 5 11 17 35 49 50 41 48 1 4 22 6 27 33 SURVIVAL  EBV FAMILY  NUMBER Estimated  Breeding  Value  for  Survival:  2011  Year  Class  Families
  • 10. A  group  of  cousins        ý   0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 3 4 2 8 4 2 2 1 0 2 1 4 5 8 1 5 3 2 5 1 2 9 2 5 1 2 4 7 1 3 4 3 2 6 1 8 3 1 9 1 6 3 0 2 0 2 3 2 4 3 6 7 9 5 1 1 1 7 3 5 4 9 5 0 4 1 4 8 1 4 2 2 6 2 7 3 3 S U R V IV A L  EB V FAMILY  NUMBER Estimated  Breeding  Value  for  Survival:  2011  Year  Class  Families
  • 11. FAMILY  2009003 FAMILY  2009025 FAMILY  2009027 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% IN D IV ID U A L  S U R V IV A L  E B V Within  Family  Variation   (3  selected  families  only)  
  • 12. Survival:  present  popula$on   34% 32% 33% 20% 17% 14% 33% 32% 20% 43% 43% 43% 71% 37% 54% 69% 58% 53% 49% 62% 74% 58% 82% 78% 51% 56% 61% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9 AVERAGE  SURVIVAL  =  47%   Survival  in  2012  
  • 13. Survival:  best  families   SURVIVAL  IMPROVEMENT  =  47%  to  ~70%   Predicted  survival  in  2014   60% 59% 60% 52% 50% 48% 60% 59% 52% 66% 66% 66% 83% 62% 72% 81% 75% 72% 69% 77% 84% 75% 89% 87% 71% 73% 77% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
  • 14. Survival:  best  individuals  and  best  families   SURVIVAL  IMPROVEMENT  =  47%  to  ~80%   Predicted  survival  in  2014   73% 73% 73% 68% 67% 65% 73% 73% 68% 77% 77% 77% 88% 75% 82% 88% 83% 81% 79% 85% 90% 83% 93% 91% 81% 82% 84% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
  • 15. Survival:  higher  disease  severity   ASSUMED  AVERAGE  SURVIVAL  =  25%     18% 17% 17% 11% 9% 7% 17% 17% 10% 23% 23% 23% 38% 19% 29% 37% 31% 28% 26% 33% 39% 31% 43% 42% 27% 30% 32% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
  • 16. Survival:  best  families  and  higher  disease   severity   SURVIVAL  IMPROVEMENT  =  25%  to  40%   Predicted  survival  in  2014     28% 27% 28% 17% 14% 12% 28% 27% 17% 36% 36% 37% 60% 31% 46% 58% 49% 45% 41% 53% 63% 50% 69% 67% 44% 47% 52% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
  • 17. Survival:  best  individuals  from  best  families   and  higher  disease  severity   SURVIVAL  IMPROVEMENT  =  25%  to   50%   Predicted  survival  in  2014   42% 40% 41% 33% 31% 29% 41% 41% 33% 48% 48% 48% 66% 44% 55% 65% 57% 54% 52% 60% 68% 58% 73% 71% 53% 56% 59% Replicate 1 Replicate 2 Replicate 3 Tray 1 Tray 2 Tray 3 Tray 4 Tray 5 Tray 6 Tray 7 Tray 8 Tray 9
  • 18. The  main  messages   •  Gene$c  selec$on  will  improve  resistance   •  But  it  is  most  likely  a  medium  term  solu$on   •  S$ll  lots  to  learn  about  the  gene$c  inheritance   of  this  disease  
  • 19. Acknowledgements   •  The  trial  site  was  provided  by  Drakes  Oysters  and  this  work   would  not  have  been  possible  without  the  assistance  of  Bob   Drake,  Ted  Drake  and  Len  Drake   •  This  study  was  done  as  part  of  the  Seafood  CRC  and  was  made   possible  with  funding  assistance  by  the  Seafood  CRC   •  Richard  Whiengton  and  Ika  Paul-­‐Pont  (University  of  Sydney)   have  helped  out  by  generously  sharing  their  knowledge  and   experience