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Introduction
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● Enzyme, in Greek means in living (en= in, zyme = living).
● Biocatalysts or Organic catalysts, usually high molecular
weight proteins (exception-Ribozymes or RNAenzymes).
● Enzymes are chemical catalyst that control various
biochemical reactions without themselves being change.
● Most of enzymes produced by cell function within that cells
called as endozyme(intracellular).
● Some enzymes are liberated by cells and catalyse reactions
in cell enviornment called exozyme(extracellular).
Enzymes are Biological Catalysts
Enzymes are proteinsthat:
● Increase the rate of
reaction by lowering the
energy of activation.
● Catalyze nearly all the
chemical reactions taking
place in the cells of the
body.
● Have unique three-
dimensional shapes that fit
the shapes ofreactants.
3
Trivial Names of Enzymes
4
The name of anenzyme:
● Usually ends in –ase.
● Identifies the reacting substance.
For example,
sucrase catalyzes the reaction of sucrose.
● Describes the function of the enzyme.
For example
oxidases catalyze oxidation.
● Could be a common name, particularly for the
digestion enzymes such as pepsin and trypsin.
IUB Classification of Enzymes
● Enzymesareclassified according to the reaction
theycatalyze.
Class
● Oxidoreductases
● Transferases
● Hydrolases
● Lyases
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● Isomerases
● Ligases
Reactions catalyzed
Oxidation-reduction
Transfer groups ofatoms
Hydrolysis
Add atoms/remove atoms
to/from a doublebond
Rearrange atoms
Use ATP tocombine
molecules
The Six Classes
●EC 1. Oxidoreductases
●EC 2. Transferases
●EC 3. Hydrolases
●EC 4. Lyases
●EC 5. Isomerases
●EC 6. Ligases
EC 1. Oxidoreductases
● Catalyze the transferof hydrogenoroxygenatoms or
electrons from one substrate toanother.
● Since these are ‘redox’ reactions, an electron
donor/acceptor is also required to complete the reaction.
AH2 +B → A+ BH2
Ex. Oxidases, Dehydrogenases, Reductases.
MAO, COX, HMGCOA reductase, DHFR.
EC 2. Transferases
 Catalyze group transfer reactions, excluding
oxidoreductases (which transfer hydrogenor
oxygenand are EC 1). Theseareof thegeneral
form:
A-X + B ↔ BX + A
 Ex: Transaminases (transfer aminogroup),
 Tyrosine Kinases (transfer Phosphategroup)
EC 3. Hydrolases
●Catalyze hydrolyticreactions.
●Bring hydrolysis of various compounds.
●A-X + H2O ↔ X-OH + A-H
●Ex: lipases, esterases, Amylases, peptidases/proteases,
etc.
Human factor xa, Bacterial serine protease,
ACE, Human carboxy peptidase,
AChE, Metalloprotease,
Phosphodiesterase 1 & 5
EC 4. Lyases
 Catalyze non-hydrolytic (covered in EC 3)removal of
functional groups from substrates, often creating a
double bond in the product; or the reverse reaction, ie,
addition of function groups across a double bond.
 Addition or removal of H2O, NH2, CO2.
A- X +B-Y → A=B + X-Y
Ex: Decarboxylases, Aldolases, Dehydrases,
Deaminases, Synthases, etc.
DOPA decarboxylase,
Carbonic anhydrase,
Histidine Caroxylase.
EC 5. Isomerases
● Catalyzes isomerization reactions, including epimerizations
andcis-trans
● isomerizations.
A →A’
Ex: Isomerases (Cis-Trans),Epimerases (D—L),
Phosphofrutokinase,
Thymidylate synthetase
EC 6. Ligases
● Catalyzes the synthesis of various (mostly C-X)
bonds, coupled with the breakdown of energy-
containing substrates, usually ATP.
A + B → A-B
ATP → ADP+iP
Ex: Synthetases, Carboxylases
Oxidoreductases
Class 1.Oxidoreductases-
•This class belong all enzymes of catalysing oxidation reduction
reactions.
•The substrate that is oxidized is regarded as hydrogen donor.
•Act on many chemical groupings to add or remove hydrogen
atoms
• The common name will be dehydrogenase, reductase can be
used.
• dehydrogenase in which removal of H from one substrate and
pass in to another substrate they not capable to passing H
directly to O2
• Oxidase is only used in cases where O2 is the acceptor.
MAO ( mono amino oxidase)
Location : In outer membrane of mitochondria and liver
Physiological role
• MAO catalyse the metabolism of catacholamine to their
inactive form aldehyde and further oxidation gives acids.
• Oxidative deamination
• detoxify foods
Types :
1)MAO- A
Location : Liver
Role: Predominate for metabolism of Nor epinephrine &
Dopamine.
2)MOA –B
Location : Liver
Role: Predominate for metabolism of serotonin.
INIBITORS or Antagonist:
IPRONIAZID
PHENELZINE
TRANYLCYPROAMINE
PARGYLINE
NIALAMIDE
ISOCARBOXAZID
• they are used in panic and hypersomnia condition
• they are used as antidepressant agent
PHENELZINE
ROLE : ANTIDEPRESSENT
Mechanism Of Action :
• Irreversible inibition
• It irreversibily inactivate the enzyme and break into
phenylethyl free radical, and nitrogen.
• That free radical inactivate the enzyme.
NH
NH2
NH
NH2
MAO
CH2
+ N2
TRANYLCYPROAMINE
MECHANISM OF ACTION
It Is Metobilised by MAO and Loose Electron To Flavin and
causes breaking of Carbon –Carbon Bond of cyclopropane ring
produce imine molecule and forms free radical With
COVALENT bond with enzyme that inhibits or inactive
MAO enzyme.
NH2
NH2
CH2
NH
MAO
CYCLOOXYGENASE (COX)
It is precursor of Prostaglandin E,D,F2,Prostacyclin and
Thromboxane.
Biological role
1) Play important Role in Prostaglandin formation which
causes pain, fever & inflammation
2) They sensitize a pain receptor
3) Prostaglandin cause vasodilation, cellular infiltration, and
sensitizes pain receptor.
4) They perform peroxidation reactions.
5) It perform two types of catalyst reaction
1) incorporation of oxygen in dioxygenase step to form PGG2.
2) PEROXIDATION to PGH2
CYCLOOXYGENASE
CYCLOGENASE TYPES
1)Cox-1 - Gastric cytoprotective
2)Cox -2 – Involved in normal renal development.
ROLE OF INIBITORS
COX -1 = Inibitors used as antiinflammatory, antipyretic,
analgesic and anticoagulant agent
Cox-2 = used as anti-neoplastic.
Examples of COX Inhibitors
COX -1 & COX -2 – Nimesulide, Paracetamol, Ibuprofen.
Selective COX -2 – Celecoxib, rafecoxib.
CYCLOOXYGENASE INHIBITORS
Drugs acting as inhibitors
• Inhibitors of COX 1 & COX2 used in different disease condition.
1)Reversible competitive inhibitor
Ibuprofen has similar binding like arachchidonic acid
2) Reversible non-competative inhibitor
Paracetomol activity is blocked by addition of antioxidant
3) Irreversible competative inhibitor
Aspirin – causes trans acetylation of enzyme COX.
Common MOA:
•COX Inhibitors inhibit COX -1 & COX -2 Which inhibit production of
PG and Thrmboxane A2 and hence inflammation is suppress.
HMG-CoA Reductase
3-hydroxy-3-methyl-glutaryl-coenzyme A reductase,
officially abbreviated (HMGCR)
Location: Hepatocytes
Role
• It is used in synthesis of cholesterol by conversion of HMG-
COA to mevalonate.
•Cholesterol play important role in body that is
- synthesis of hormone,
- in digestion, and as a building block.
• Two types of cholesterol HDL & LDL.
• Excessive deposition of LDL causes hyperlipidemia.
(Atherosclerosis)
Statins
The drugs which inhibit HMG CoAreductase enzyme includes :
Types of inhibitors.
1)Type-I statin-
Lovastatin, simvastatin, pravastatin
• This represent first generation statin and are derived from
Fungal metabolite and mainly contain polar head and
hydrophobic moiety.
• This effectively block active site of enzyme and lower cholesterol
level
• They are not easy to synthesize due to large asymmetric centers.
2) Type-II statin-
Fluvastatin, Atrovastatin
This represent second generation statin and are derived from
Fungal metabolite and mainly contain polar head and larger
hydrophobic moiety and easy to synthesize.
Side effects : liver toxicity , muscletoxicity
HMG-CoA Reductase
• Mechanism of action
• They are competitive inhibitors and compete with
natural substrate to bind with active site.
• They bind strongly as compared to natural
substrate.
• They contain hydrophobic moiety which binds
more strongly to active site
• It has structural similarity with mevaldyl CoA and
block formation of cholesterol.
DHFR (HUMAN)
Human DHFR is 186 amino acids protein with
molecular weight around 20 kDa
 It is useful in DNA synthesis and cell division by
maintaining a level of enzyme cofactor tetra hydrate
folate.
 cofactor tetrahydrate folate is useful in synthesis of
DNA and RNA.
Role
• DHFR has important role to regenerate folic acid in to its
reduced form tetrahydrofolate.
DNA, RNA/ Nucleic acid
HUMAN
Folic Acid
DHFR
METHOTREXATE
BACTERIA
CELL GROWTH
DHFR (HUMAN) inhibitors
• Example:
• Methotrexate:
• Act as a anticancer agents.
• Mechanism of action
METHOTREXATE
DHFR
FOLIC ACID-----------------FH4---- -------- DNA SYNTHESIS
DHFR(BACTERIAL)
 It is useful in DNA synthesis and provide one carbon moiety
for synthesis of pyrimidine nucleic acid base used for DNA
synthesis.
 If DNA synthesis is blocked then bacteria no longer grow and
divide .
DHFR (Bacterial) inhibitors
1. Inhibitors - Sulphonamide, sulphathiazole,
sulpadiazene, sulphapyridine . Etc
Mechanism:
It acts as competitive enzyme inhibition of
dihydropteroate synthetase and block DNA synthesis .
2. Trimethoprime
Mechanism
Trimethoprim is an inhibitor of DHFR of micro-
organisms, but resistance to its action develops quickly
when it is used alone, so it is usually combined with
another antibiotics.
Class 2. Transferases-
• Transfer chemical groups from one molecule to
another or to another part of the same molecule.
• AX +B ------- A + BX
-------
These enzyme are classified on basis of functional
group
1) NH2 (Transamination)
2) Ph (Transphosphorylation)
• Kinases are specialized transferases that regulate
metabolism by transferring phosphate from ATP to
other molecules.
Tyrosine Kinase (Leishmanial, Bacterial and Human)
 A tyrosine kinase is an enzyme that can transfer a phosphate
group from ATP to a protein in a cell.
 Itfunctions as an "on" or "off" switch in many cellular
functions.
 Tyrosine kinases are a subclass of protein kinase.
 The phosphate group is attached to the amino acid tyrosine on
the protein.
 Tyrosine kinases are a subgroup of the larger class of protein
kinases that attach phosphate groups to other amino acids
(serine and threonine).
 Phosphorylation of proteins by kinases is an important
mechanism in communicating signals within a cell (signal
transduction) and regulating cellular activity, such as cell
division.
 Protein kinases as drug targets in bacteria and Leishmania
Tyrosine kinase human
• Tyrosine kinase mainly helps in cell cycle progression.
• Tyrosine kinase helps in transmitting mitogenic signals .
• Tyrosine kinase is useful in regulating cell processes.
• Tyrosine kinase(protein) transforms normal cell into
neoplastic cell .
• Tyrosine kinase is regulate by following mechanism
1) protein- protein interaction
2) phosphorylation
3) Intercellular sequestration (binding of Iron ion with cell)
4) Proteolytic degradation of kinases
Bacterial tyrosine kinase
Protein Tyrosine kinase also found in bacteria
and classified as kinase .
They are involved in several biological function
1. Protein biosynthesis
2. Antibiotic resistance
3. Virulence mechanism(harmfulness of disease)
4. Polysaccharide synthesis
1. Tyrosine Kinase Inhibitors
eg: Imatinib, Dasatinib, and Nilotinib.
2. Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitors
eg: Gefitinib, Lapatinib.
3. Vascular Endothelial Growth Factor Tyrosine Kinase Inhibitors
eg. Semaxinib, Vatalanib, Sunitinib, Sorafenib.
Tyrosine kinase inhibitors
1 . Lapatinib
it is used as non- selective kinase inhibitor.
It is an orally active chemotherapeutic agent
it is used in solid cancers
it is also in breast cancer therapy
Tyrosine kinase inhibitors
3. Gefitnib
it inhibit tyrosine kinase domain of epidermal growth factor
receptor . Therefore, it is only effective in cancers with mutated and
overactive EGFR.
it is used in pancreatic, Breast, Lung cancer.
4. Erlotinib
it is used as non- selective tyrosine protein kinase inhibitor of
epidermal growth factor receptor.
Mechanism of action :
Inhibitors act as segment of the kinase domain that fixes the
enzyme in a closed or nonfunctional state, in which the protein
is unable to bind its substrate/phosphate donor, ATP.
Class 3. Hydrolases-
• Add water across a bond, hydrolyzing it
A-B + H₂O --------) AOH + BH
• These enzymes catalyze the hydrolytic cleavage of C-O,
C-N, C-C and some other bonds, which divide large
molecule in small.
• Carried out important degradative reactions in the body
during digestion like protease convert protein to amino
acids.
• Examples of common hydrolases are Esterase, Protease,
lipase, Glycosidase.
• These enzymes are usually names of substrate followed
by ‘ase’ e.g penicillinase , urease etc.
Human factor Xa
• An important type of hydrolase enzyme which favor
blood coagulation.
• Factor Xa generated from factor X by the action of
Ca++ and phospholipids the form Xa then combine
with Va to form prothrombinase complex which
transform prothrombin to thrombin.
• It is produce by activation of zymogens by intrinsic
or extrinsic factor.
• It is component of prothrombinase complex which
transform prothrombin to thrombin.
Combine with Va
Inhibitor
• Rivaroxaban
it is synthetic inhibitor of factor Xa of anticoagulant class and act directly on factor Xa
in coagulation cascade without using anti thrombin as mediator.
it is used in atrial fibrillation and appears effective in embolic strokes.
It causes bleeding in G.I
mechanism
• Rivaroxaban inhibits both free Factor Xa and Factor Va bound
in the prothrombinase complex
• It is a highly selective direct Factor Xa inhibitor with
oral bioavailability and rapid onset of action.
• Inhibition of Factor Xa interrupts the intrinsic and extrinsic
pathway of the blood coagulation cascade, inhibiting
both thrombin formation and development of thrombi.
• It allows predictable anticoagulation and dose adjustments
and routine coagulation monitoring as well as dietary
restrictions are not needed.
Bacterial serine protease
Location : animals ,plants , archaea , and viruses.
• Protease mainly performs proteolysis and causes catabolism by
hydrolysis of peptide bond that linked amino acid together in
polypeptide chain.
• A protease (also called peptidase or proteinase)
is any enzyme that:
• performs proteolysis; protein catabolism by hydr
olysis of peptide bonds.
• Proteases have evolved multiple times, and
different classes of protease can perform the
same reaction by completely different catalytic
mechanisms.
mechanism : A comparison of the two mechanisms used for proteolysis. enzyme is shown in black,
substrate protein in red and water in blue. The top panel shows 1-step hydrolysis where the enzyme
uses an acid to polarise water which then hydrolyses the substrate. The bottom panel shows 2-step
hydrolysis where a residue within the enzyme is activated to act as a nucleophile (Nu) and attack the
substrate. This forms an intermediate where the enzyme is covalently linked to the N-terminal half of
the substrate. In a second step, water is activated to hydrolyse this intermediate and complete catalysis.
classification
• Serine proteases : using serine alcohol
• Cysteine proteases : using cystine thoil
• Aspartate proteases : using aspartate carboxylic acid
• Threonine proteases : using threonine secondary
alcohol
• Glutamic acid proteases :using Glutamic carboxylic
acid
• Metallo proteases : using metal ,zinc
• Asparagine peptide lyases :involve asparagine.
inhibitors
• E-64
The compound was first isolated and identified from Aspergillus
japonicus in 1978
Mechanism :
It is an epoxide which irreversibly inhibit cystine peptidases.
it inhibit cystine peptidases such as papain , calpin , catespin ,
staphopain .
Used : anticancer agent as Bladder carcinoma .
Metalloproteases
• This are enzymes comprising of metal ion at
their active site and causing protein
degradation by hydrolysis of peptide bond.
• The enzymes uses following metal ion at
active site : Zn , Mn, CO etc.
Metalloprotease inhibitors
• Metalloprotease inhibitors are cellular inhibitors of the
Matrix metalloproteinases (MMPs).
• MMPs belong to a family of zinc-dependent neutral
endopeptidases.
• These enzymes have the ability to break down connective
tissue.
• The expression of MMPs is increased in various
pathological conditions like inflammatory conditions,
metabolic bone disease, to cancer invasion, metastasis
and angiogenesis.
• Examples of diseases are, hepatitis, glomerulonephritis,
atherosclerosis, asthma, autoimmune disorders of skin
inhibitors
• Marimastat
• used in the treatment of cancer,
• Marmiastat is an angiogenesis and metastasis inhibitor.
• As an angiogenesis inhibitor it limits the growth and
production of blood vessels.
• As an antimetatstatic agent it prevents malignant cells.
• it is an antineoplastic drug and it act as broad spectrum
metalloproteinase inhibitor
mechanism
• Marimastat is a broad spectrum matrix
metalloprotease inhibitor.
• It mimics the peptide structure of natural MMP
substrates and binds to matrix metalloproteases,
thereby preventing the degradation of the basement
membrane by these proteases.
• This antiprotease action prevents the migration of
endothelial cells needed to form new blood vessels.
• Inhibition of MMPs also prevents the entry and exit
of tumor cells into existing blood cells, thereby
preventing metastasis
• Batimastat
It is anticancer drug belonging to class
angiogenisis inhibitor .
It acts as metalloproteinase inhibitor by
mimicking natural peptides like MMP.
MECHANISM
• Angiogenesis inhibitors are unique cancer-
fighting agents because they tend to inhibit
the growth of blood vessels rather than tumor
cells.
• Angiogenesis inhibitor therapy does not
necessarily kill tumors but instead may
prevent tumors from growing. Therefore, this
type of therapy may need to be administered
over a long period
Angiotensinogen converting Enzyme
(ACE)
 ACE is membrane bound enzyme and also
metalloproteinase enzyme.
Causes hydrolysis of dipeptide fragment from
end decapeptide called Angiotensin I to give
octapeptide Angiotensin II .
 Angiotensin II causes constriction of blood
vessels and hence rise in Blood pressure.
 It stimulate thrist, Aldosterone secretion, ADH
stimulation, increases Na+/H+ exchanger
activity.
ACE INHIBITORS
ACE inhibitors causes inhibition of production
of angiotensin II.
Eg: Captopril, enalapril, lisinopril, Perindopril,
fosinopril, ramipril , imidapril, Benazepril etc.
Captopril
MECHANISM OF ACTION
• It inhibit ACE
• It has vasodilatation and inhibition of some renal function activities.
• It has shown mood elevating properties in some patient.
• Uses- In treatment of hypertension and CHF
LISINOPRIL
• Lisinopril is an ACE Inhibitor, meaning it blocks the actions of
angiotensin converting enzyme (ACE) in the renin-angiotensin-
aldosterone system (RAAS).
• keeping Angiotensin I from being converted to Angiotensin II.
The inhibition of this system causes an overall decrease in blood
pressure.
CARBOXYPEPTIDASES
• It is an polypeptidases obtained by breakdown of
proteins like trypsin , chymotrypsin etc.
• It mainly contain groups like –SH , Mg , Zn.
• carboxypeptidase is a protease enzyme that
hydrolyzes (cleaves) a peptide bond at the carboxyl-
terminal (C-terminal) end of a protein or peptide.
(Contrast with an aminopeptidase, which cleaves
peptide bonds at the other end of the protein.)
• Humans, animals, and plants contain several types
of carboxypeptidases that have diverse functions
ranging from catabolism to protein maturation.
• Classification
• A) on basis of active site
1)Enzymes that use a metal in the active site are
called "metallo-carboxypeptidases
2) carboxypeptidases that use active site serine
residues are called "serine carboxypeptidases
3) Those that use an active site cysteine are called
"cysteine carboxypeptidase
B) On basis of preference to substrate
1) Carboxypeptidases that have a stronger preference
for those amino acids containing aromatic or
branched hydrocarbon chains are called
carboxypeptidase A (A for aromatic/aliphatic)
2) Carboxypeptidases that cleave positively charged
amino acids (arginine, lysine) are called
carboxypeptidase B (B for basic).
3) A metallo-carboxypeptidase that cleaves a C-terminal
glutamate from the peptide N-acetyl-L-aspartyl-L-
glutamate is called "glutamate carboxypeptidase
Phisological role
• In digestion of food.
• In catabolism
• Help in mature proteins or regulate biological process.
• In biosynthesis of neuroendocrine peptides such as
insulin required carboxypeptidase.
• Also function in blood clotting,growth factor
production and wound healing.
Mechanism
• An enzyme which hydrolyses (cleaves) the peptide
bond of the COOH terminal amino acid from a
peptide;
• carboxypeptidase A removes aromatic or branched
hydrocarbons,
• while carboxypeptidase B removes positively
charged terminal lysine or arginine amino acid
residues
Inhibitors
• In molecular biology, the carboxypeptidase A inhibitor family is a family of
proteins which is represented by the well-characterised
metallocarboxypeptidase
• A inhibitor (MCPI) from potatoes.
• It is a mixture of approximately equal amounts of two polypeptide chains
containing 38 or 39 amino acid residues. The chains differ in their amino
terminal sequence only and are resistant to fragmentation by proteases.
• The potato inhibitor is synthesized as a precursor, having a 29 amino acid
N-terminal signal peptide, a 27 amino acid pro-peptide, the 39 amino acid
mature inhibitor region and a 7 amino acid C-terminal extension.
• The 7 amino acid C-terminal extension is involved in inhibitor inactivation
and may be required for targeting to the vacuole where the mature active
inhibitor accumulates.
•The N-terminal region and the mature inhibitor are weakly related to other
solananaceous proteins found in this family, from potato, tomato and
henbane, which have been incorrectly described
as metallocarboxypeptidase inhibitors
Class 4. Lyases
• In biochemistry, a lyase is an enzyme that catalyzes the breaking
(an "elimination" reaction) of various chemical bonds by means
other than hydrolysis (a "substitution" reaction) and oxidation, often
forming a new double bond or a new ring structure.
• The reverse reaction is also possible (called a "Michael addition").
For example, an enzyme that catalyzed this reaction would be a
lyase:
ATP → cAMP + PPiLyases
• Differ from other enzymes in that they require only
one substrate for the reaction in one direction, but two substrates
for the reverse reaction.
• Remove a group from or add a group to double bonds.
• Add water, ammonia or carbon dioxide across double bonds, or
remove these elements to produce double bonds
• In the common names, expressions like decarboxylase, aldolase,
dehydratase (in case of elimination of CO22, aldehyde, or water) are
used
• The lyases catalyzes the removal of small
molecule from larger substrate molecule.
• The lyases shows reversible reaction and
catalyzes the addition of smaller molecule to
larger substrate.
• They are classified on basis linkage they attack
like c-c ,c-o , c-n , c-s , c-x
DOPA decarboxylase
• It catalyzes several different decarboxylation reactions
such as
• 1. L DOPA to dopamine
• 2. 5-HTP to serotonin
• 3. L-Histidine to Histamine
• 4. Tryptophan to tryptamine
Role: play a important role in the synthesis of epinephrine
(Neurotransmitter).
Dopamine is catecholamine, plays an important role in
the human brain body that it reward motivated behavior.
Parkinsons diseases is caused by loss of dopamine
secreting area in brain.
DOPA Carboxylase inhibitors
• Used in treatment of several nervous system
diseases like Parkinson's diseases.
• Eg. Carbidopa.
• Is the drug used given to patient with Parkinson's
disease.
• It inhibit the peripheral metabolism of levodopa.
• That is allows a greater portion of peripheral
levodopa to cross BBB for central nervous system
effect.
Carbonic Anhydrase
• Carbonic Anhydrase is a zinc protein complex.
• Location in RBCs also small amount in muscle tissues, pancreases
and never found in plasma.
• The enzyme also found in some more amount in parietal cells of
stomach where it is involved in secretion of H+.
• H+ generated is exchanged for filtered Na+ in luminal fluid (Kidney)
• At the lung side the reaction in the RBCs start diffusion of O₂ from
alveolar air in to RBCs.
• The O₂ combine with Hb to form ( H.HbO₂) being strong acids and
ionizes in HbO₂¯ and H⁺.
• The H⁺ combine with HCO3¯ form H₂CO3 at site of tissues.
• The form carbonic acid which decomposes in the presence of CA to
form H₂O and CO₂.
Carbonic anhydrase inhibitor
• Carbonic anhydrase inhibitors are a class of
pharmaceuticals that suppress the activity of carbonic
anhydrase.
• Their clinical use has been established as
anti-glaucoma agents,
diuretics,
antiepileptics,
in the management of mountain sickness,
Gastric & duodenal ulcers,
hypertension,
neurological disorders,
osteoporosis.
1. Acetazolamide,
• sold under the trade name Diamox among others, is a
medication used to treat glaucoma, epilepsy, Mountain
sickness, periodic paralysis, hypertension, and heart
failure.
• It may be used long term for the treatment of open
angle glaucoma and short term for acute angle closure
glaucoma.
2. Diuretics
• Dorzolamide
• Methazolamide
• Brinzolamide
• dichlorphenamide
3. Brinzolamide
• (Tradenames Azopt, Alcon Laboratories, Befardin,
Fardi Medicals, is a carbonic anhydrase
inhibitor used to lower intraocular pressure in
patients with open-angle glaucoma or ocular
hypertension.
4. Topiramate
(brand name Topamax) is a broad-
spectrum anticonvulsant(antiepilepsy) drug
5.Natural Inhibitors
Ellagitannins extracted from the pericarps of Punica
granatum, the pomegranate.
• such as punicalin, punicalagin, granatin
B,gallagyldilactone, casuarinin, pedunculagin and
tellimagrandin I, are carbonic anhydrase inhibitors.
Histidine decarboxylase
• Histidine decarboxylase is mainly involved in
production histamine from histidine with help of
vitamin B6.
Histidine decarboxylase
• Histidine ------------- histamine
Histidine decarboxylase
Vit B6
Vit B6
Physiological Role
• It dilates blood capillaries
• Lowers blood pressure
• It elevates secretion of gastric juice
• It elevates secretion of saliva
• It causes contraction of involuntary muscle
• It elevates tone of bronchiolar tissues
• It controls blood circulation in normal
organism
inhibitors
• Tritogualine
• Diphenhyramines
• Cyproheptadine
• Ranitidine
• Cimetidine
• MOA
This all are histidine decarboxylase inhibitors are used as antihistaminic
agents.
Role :
it is used in treatment of ulcer
It is used in treatment of allergic rhinitis
It is used to treat allergic reactions
Bronchial asthma
Anaphylactic shock
Blurring of vision
Hypotension
Esterase
• An esterase is hydrolase enzyme that splits ester into acid and
alcohol in chemical reaction with water called hydrolysis.
RCOOR’ H2O RCOOH + R’OH
• Classification
• Acetylesterase e.g cholinesterase
• Thiol esterase hydrolases e.g Thiol esterase
• Phosperic monoester hydrolase e.g alkaline phosphatase
• Sulfuric ester hydrolase
• Diphosperic monoester hydrolase
• Phosperic triester hydrolase
• Sulfuric ester hydrolases
Acetylcholine Esterase (AchE)
• Ach It is neurotransmitter for parasympathetic
nervous system stimulation of parsasympathetic
nervous system induces constriction of pupil and
bronchi
• Decrease in heart activity
• Increase in activity of digestive system i.e salivation.
• Motility of intestine is also increased.
• The free Ach present in blood and other tissue get
hydrolyzed by enzyme AchE present in serum.
AchE inhibitors
• Ach present in blood and tissue get hydrolyzed by Acetylcholine
Esterase into acetic acid and choline.
• Its inhibitors used in treatment of Treatment of myasthenia gravis
, Glaucoma, Alzheimer’s.
• MAO: it inhibit the AchE reversibly or irreversibly and increase
Ach level in blood.
• Examples
1. Reversible 2. Irreversible
• Physostigmine Organophosphrorous compounds and
• Neostigmine Carbamates.
• Rivastigmine
• Donezepil
• Galantamine
• Tacrine
• Physostigmine :
it is cholinesterase inhibitor used in treatment of Parkinson diseases
• Rivastigmine
it is cholinesterase inhibitor used in treatment of Parkinson diseases
• Donezepil
it is centrally acting reversible cholinesterase inhibitor used in treatment of Alzheimer
diseases
• Galantamine
it is an alkaloid obtained from flower of Galanthus caucasius. It is reversible
cholinesterase inhibitor
• Tacrine
it is centrally acting reversible cholinesterase inhibitor used in treatment of Alzheimer
diseases
Phospodiestarese
• This enzyme hydrolyzed cyclic phosphate ester of
AMP & GMP
• AMP & GMP are substrate of enzyme but shows
different active site.
Reaction
Cyclic Phosphate ester AMP & GMP.
PD
PDE1
• PDE1 (phosphodiesterase type 1)
• is a phosphodiesterase enzyme also known as calcium-
and calmodulin-dependent phosphodiesterase.
• It is one of the 11 families of phosphodiesterase
(PDE1-PDE11).
• PDE1 has three subtypes, PDE1A, PDE1B and
PDE1C which divide further into various isoforms.
• The various isoforms exhibit different affinities
for cAMP and cGMP
Physiological Role
• Intracellular second messengers such as cGMP and cAMP undergo
rapid changes in concentration in a response to a wide variety of
cell specific stimuli.
• The role of PDE1 enzymes is to degrade both cGMP and cAMP.
• Binding of PDE to cGMP and cAMP, respectively
• The various isoforms exhibit different affinities for cAMP and cGMP.
PDE1A and PDE1B preferentially hydrolyze cGMP,
• whereas PDE1C degrades both cAMP and cGMP with high affinity.
• For example, in airway smooth muscles of humans and other
species, generic PDE1 accounts for more than 50% of the hydrolytic
activity of cyclic nucleotides.
• It has been seen that PDE1 produces strong effects on agonist-
induced cAMP signaling but has little effect on the basal cAMP
level
PDE1 Inhibitors
• Many compounds reported as PDE1 inhibitors do not interact
directly with the catalytic site of PDE1 but interact during
activation, either at the level of calmodulin binding sites such
as compound KS505a or directly on Ca2+/calmodulin such
as bepril, flunarizine and amiodarone
• Initially PDE1 inhibitors were claimed to be effective vascular
relaxants. Also it is now known that such inhibitors are in fact
equally active against PDE5. Those inhibitors include
e.g. zaprinast.
• Nimodipine is a dihydropyridine that antagonizes/blocks
specifically L-type Ca2+-channel, and described as a PDE1
inhibitor.
• Vinpocetine was described as a specific inhibitor of basal and
calmodulin-activated PDE1. This effect leads to an increase of
cAMP over cGMP. It is also equally effective against PDE5.
PDE 5
PDE5 inhibitors
• Sildenafil, tadalfil,vardenafil are phospodiestarese 5
inhibitors used in treatment of erectile dysfunction
& maintaining desired lifestyle.
• Role
• Anti-inflammatory
• Vasodilator
• Smooth muscle relaxant.
• Antidepressant
• Antithrombotic
• Cardio tonic
• Improve cognitive function.
Isomerases
• Class 6. Isomerases-.
• These enzymes catalyze geometric or structural changes
within one molecule.
• According to the type of isomerism (interconvert
isomeric structures by molecular rearrangements)
• They may be called, cis-trans-isomerases, isomerases,
tautomerases, mutases and L to D isomerase,
• They are classified based on type of reaction
• 1) Racemases 2) Epimerases
• E.g alalnineracemase , Glucose phosphate isomrerases
etc
Thymidylate synthase (human & Fungal)
• This enzyme catalyze the methylation of deoxy
uridine monophosphate(dUMP) into deoxy
thymidine monophosphate (dTMP) using 5, 10,
methylene tetra phosphate as a coenzyme.
Thymidylate synthase
dUMP -------------------------- dTMP
Thymidylate synthetase in human & Fungi
• Thymidylate synthase is available from bacterial
version from “E-COLI “ by using recombinant
DNA technology .
• The bacterial enzyme is not identical to human
but are similar.
Thymidylate Synthase Inhibitors
• The inhibitors mainly block action of
Thymidylate synthase
• They mainly block synthesis of DNA .
• Types of inhibitors are
1) CB 3717
2) 5-Fluro uracil
3) Raltiterxed
CB 3717
• MECHANISM
the CB 3717 contains PTERIDINE RING which
mainly act as binding interaction to amino acid –
“ALA-263” , ” ARG-21” and also form hydrogen
bonding with water molecule and inhibit the
action of Thymidylate synthase .
It mainly act as anti-tumor agent.
5-flourouracil
• It is Oncology Drug and used as colorectal cancer .
• It is analog of 5-fluorinated pyrimidine.
• Fluorouracil (5-FU), sold under the brand
name Adrucil among others, is a medication used
to treat cancer.
mechanism
• 5-FU acts in several ways, but principally as
a thymidylate synthase (TS) inhibitor.
• Interrupting the action of this enzyme blocks
synthesis of the pyrimidine thymidine, which is
a nucleoside required for DNA replication.
Raltitrexed
• Raltitrexed is chemically similar to folic acid and
is in the class of chemotherapy drugs which
inhibit enzymes: DHFR, thymidylate synthase.
• By inhibiting Thymidylate synthase (TS), thus
formation of precursor pyrimidine nucleotides,
raltitrexed prevents the formation of DNA and
RNA, which are required for the growth and
survival of both normal cells and cancer cells.
PHOSPOFRUCTOKINASE ( Leishmanial)
• Phospofructokinase is an kinase enzyme that
phosphorylate fructose 6 phosphate in glycolysis to
fructose 1,6, diphosphate .
• This enzyme catalyzed transfer of phosphoryl group
from ATP.
Fructose 6 Phosphate + ATP --- Fructose1, 6 diphosphate + ADP.
• PFKs It exist as Homotetramer in bacteria and
mammals and as octamer in yeast .
• PFKs Deficiency of it leads to glycogenesis type- VII (
Tarui’s disease) nausea, vomiting, muscle cramps
,myoglobunuria. etc
• Types of PFK
• 1) Phospofructokinase – 1 : 6 –Phospofructokinase , Phospohexakinase
• 2) Phospofructokinase -2 :Phospofructo kinase 2
• 3) 6 -Phospofructokinase -1 : It promote conversion of fructose 6
phosphate to fructose 1,6, diphosphate .
• 4) 6 -Phospofructokinase -2 :it is bifunctional enzyme that act as
both kinase and as phosphate by regulating synthesis of fructose
2,6 biphosphate and transformation to fructose 6 phosphate.
• Role of PFK
• It is important enzyme in all living life.
• It perform conversion of fructose 6- phosphate
to fructose 1,6-bisphosphate.
PFKs inhibitors
PFKs inhibitors is represented by sulforaphane an
isothyocynate derivatives are mainly found in cruciferous
vegetable, Such as broccoli.
Synthetic examples of inhibitors.
• Salicylic acid
• Acetyl salicylic acid
MECHANISM
This mainly inhibit PFK activity and glucose metabolism
and decrease cell viability ,and PKFS activity in breast
cancer .

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Enzymes 2.1

  • 1.
  • 2. Introduction 2 ● Enzyme, in Greek means in living (en= in, zyme = living). ● Biocatalysts or Organic catalysts, usually high molecular weight proteins (exception-Ribozymes or RNAenzymes). ● Enzymes are chemical catalyst that control various biochemical reactions without themselves being change. ● Most of enzymes produced by cell function within that cells called as endozyme(intracellular). ● Some enzymes are liberated by cells and catalyse reactions in cell enviornment called exozyme(extracellular).
  • 3. Enzymes are Biological Catalysts Enzymes are proteinsthat: ● Increase the rate of reaction by lowering the energy of activation. ● Catalyze nearly all the chemical reactions taking place in the cells of the body. ● Have unique three- dimensional shapes that fit the shapes ofreactants. 3
  • 4. Trivial Names of Enzymes 4 The name of anenzyme: ● Usually ends in –ase. ● Identifies the reacting substance. For example, sucrase catalyzes the reaction of sucrose. ● Describes the function of the enzyme. For example oxidases catalyze oxidation. ● Could be a common name, particularly for the digestion enzymes such as pepsin and trypsin.
  • 5. IUB Classification of Enzymes ● Enzymesareclassified according to the reaction theycatalyze. Class ● Oxidoreductases ● Transferases ● Hydrolases ● Lyases 5 ● Isomerases ● Ligases Reactions catalyzed Oxidation-reduction Transfer groups ofatoms Hydrolysis Add atoms/remove atoms to/from a doublebond Rearrange atoms Use ATP tocombine molecules
  • 6. The Six Classes ●EC 1. Oxidoreductases ●EC 2. Transferases ●EC 3. Hydrolases ●EC 4. Lyases ●EC 5. Isomerases ●EC 6. Ligases
  • 7. EC 1. Oxidoreductases ● Catalyze the transferof hydrogenoroxygenatoms or electrons from one substrate toanother. ● Since these are ‘redox’ reactions, an electron donor/acceptor is also required to complete the reaction. AH2 +B → A+ BH2 Ex. Oxidases, Dehydrogenases, Reductases. MAO, COX, HMGCOA reductase, DHFR.
  • 8. EC 2. Transferases  Catalyze group transfer reactions, excluding oxidoreductases (which transfer hydrogenor oxygenand are EC 1). Theseareof thegeneral form: A-X + B ↔ BX + A  Ex: Transaminases (transfer aminogroup),  Tyrosine Kinases (transfer Phosphategroup)
  • 9. EC 3. Hydrolases ●Catalyze hydrolyticreactions. ●Bring hydrolysis of various compounds. ●A-X + H2O ↔ X-OH + A-H ●Ex: lipases, esterases, Amylases, peptidases/proteases, etc. Human factor xa, Bacterial serine protease, ACE, Human carboxy peptidase, AChE, Metalloprotease, Phosphodiesterase 1 & 5
  • 10. EC 4. Lyases  Catalyze non-hydrolytic (covered in EC 3)removal of functional groups from substrates, often creating a double bond in the product; or the reverse reaction, ie, addition of function groups across a double bond.  Addition or removal of H2O, NH2, CO2. A- X +B-Y → A=B + X-Y Ex: Decarboxylases, Aldolases, Dehydrases, Deaminases, Synthases, etc. DOPA decarboxylase, Carbonic anhydrase, Histidine Caroxylase.
  • 11. EC 5. Isomerases ● Catalyzes isomerization reactions, including epimerizations andcis-trans ● isomerizations. A →A’ Ex: Isomerases (Cis-Trans),Epimerases (D—L), Phosphofrutokinase, Thymidylate synthetase
  • 12. EC 6. Ligases ● Catalyzes the synthesis of various (mostly C-X) bonds, coupled with the breakdown of energy- containing substrates, usually ATP. A + B → A-B ATP → ADP+iP Ex: Synthetases, Carboxylases
  • 13. Oxidoreductases Class 1.Oxidoreductases- •This class belong all enzymes of catalysing oxidation reduction reactions. •The substrate that is oxidized is regarded as hydrogen donor. •Act on many chemical groupings to add or remove hydrogen atoms • The common name will be dehydrogenase, reductase can be used. • dehydrogenase in which removal of H from one substrate and pass in to another substrate they not capable to passing H directly to O2 • Oxidase is only used in cases where O2 is the acceptor.
  • 14. MAO ( mono amino oxidase) Location : In outer membrane of mitochondria and liver Physiological role • MAO catalyse the metabolism of catacholamine to their inactive form aldehyde and further oxidation gives acids. • Oxidative deamination • detoxify foods
  • 15. Types : 1)MAO- A Location : Liver Role: Predominate for metabolism of Nor epinephrine & Dopamine. 2)MOA –B Location : Liver Role: Predominate for metabolism of serotonin. INIBITORS or Antagonist: IPRONIAZID PHENELZINE TRANYLCYPROAMINE PARGYLINE NIALAMIDE ISOCARBOXAZID • they are used in panic and hypersomnia condition • they are used as antidepressant agent
  • 16. PHENELZINE ROLE : ANTIDEPRESSENT Mechanism Of Action : • Irreversible inibition • It irreversibily inactivate the enzyme and break into phenylethyl free radical, and nitrogen. • That free radical inactivate the enzyme. NH NH2 NH NH2 MAO CH2 + N2
  • 17. TRANYLCYPROAMINE MECHANISM OF ACTION It Is Metobilised by MAO and Loose Electron To Flavin and causes breaking of Carbon –Carbon Bond of cyclopropane ring produce imine molecule and forms free radical With COVALENT bond with enzyme that inhibits or inactive MAO enzyme. NH2 NH2 CH2 NH MAO
  • 18. CYCLOOXYGENASE (COX) It is precursor of Prostaglandin E,D,F2,Prostacyclin and Thromboxane. Biological role 1) Play important Role in Prostaglandin formation which causes pain, fever & inflammation 2) They sensitize a pain receptor 3) Prostaglandin cause vasodilation, cellular infiltration, and sensitizes pain receptor. 4) They perform peroxidation reactions. 5) It perform two types of catalyst reaction 1) incorporation of oxygen in dioxygenase step to form PGG2. 2) PEROXIDATION to PGH2
  • 19.
  • 20. CYCLOOXYGENASE CYCLOGENASE TYPES 1)Cox-1 - Gastric cytoprotective 2)Cox -2 – Involved in normal renal development. ROLE OF INIBITORS COX -1 = Inibitors used as antiinflammatory, antipyretic, analgesic and anticoagulant agent Cox-2 = used as anti-neoplastic. Examples of COX Inhibitors COX -1 & COX -2 – Nimesulide, Paracetamol, Ibuprofen. Selective COX -2 – Celecoxib, rafecoxib.
  • 21. CYCLOOXYGENASE INHIBITORS Drugs acting as inhibitors • Inhibitors of COX 1 & COX2 used in different disease condition. 1)Reversible competitive inhibitor Ibuprofen has similar binding like arachchidonic acid 2) Reversible non-competative inhibitor Paracetomol activity is blocked by addition of antioxidant 3) Irreversible competative inhibitor Aspirin – causes trans acetylation of enzyme COX. Common MOA: •COX Inhibitors inhibit COX -1 & COX -2 Which inhibit production of PG and Thrmboxane A2 and hence inflammation is suppress.
  • 22. HMG-CoA Reductase 3-hydroxy-3-methyl-glutaryl-coenzyme A reductase, officially abbreviated (HMGCR) Location: Hepatocytes Role • It is used in synthesis of cholesterol by conversion of HMG- COA to mevalonate. •Cholesterol play important role in body that is - synthesis of hormone, - in digestion, and as a building block. • Two types of cholesterol HDL & LDL. • Excessive deposition of LDL causes hyperlipidemia. (Atherosclerosis)
  • 24. The drugs which inhibit HMG CoAreductase enzyme includes : Types of inhibitors. 1)Type-I statin- Lovastatin, simvastatin, pravastatin • This represent first generation statin and are derived from Fungal metabolite and mainly contain polar head and hydrophobic moiety. • This effectively block active site of enzyme and lower cholesterol level • They are not easy to synthesize due to large asymmetric centers. 2) Type-II statin- Fluvastatin, Atrovastatin This represent second generation statin and are derived from Fungal metabolite and mainly contain polar head and larger hydrophobic moiety and easy to synthesize. Side effects : liver toxicity , muscletoxicity
  • 25. HMG-CoA Reductase • Mechanism of action • They are competitive inhibitors and compete with natural substrate to bind with active site. • They bind strongly as compared to natural substrate. • They contain hydrophobic moiety which binds more strongly to active site • It has structural similarity with mevaldyl CoA and block formation of cholesterol.
  • 26. DHFR (HUMAN) Human DHFR is 186 amino acids protein with molecular weight around 20 kDa  It is useful in DNA synthesis and cell division by maintaining a level of enzyme cofactor tetra hydrate folate.  cofactor tetrahydrate folate is useful in synthesis of DNA and RNA. Role • DHFR has important role to regenerate folic acid in to its reduced form tetrahydrofolate.
  • 27. DNA, RNA/ Nucleic acid HUMAN Folic Acid DHFR METHOTREXATE BACTERIA CELL GROWTH
  • 28. DHFR (HUMAN) inhibitors • Example: • Methotrexate: • Act as a anticancer agents. • Mechanism of action METHOTREXATE DHFR FOLIC ACID-----------------FH4---- -------- DNA SYNTHESIS
  • 29. DHFR(BACTERIAL)  It is useful in DNA synthesis and provide one carbon moiety for synthesis of pyrimidine nucleic acid base used for DNA synthesis.  If DNA synthesis is blocked then bacteria no longer grow and divide .
  • 30. DHFR (Bacterial) inhibitors 1. Inhibitors - Sulphonamide, sulphathiazole, sulpadiazene, sulphapyridine . Etc Mechanism: It acts as competitive enzyme inhibition of dihydropteroate synthetase and block DNA synthesis . 2. Trimethoprime Mechanism Trimethoprim is an inhibitor of DHFR of micro- organisms, but resistance to its action develops quickly when it is used alone, so it is usually combined with another antibiotics.
  • 31. Class 2. Transferases- • Transfer chemical groups from one molecule to another or to another part of the same molecule. • AX +B ------- A + BX ------- These enzyme are classified on basis of functional group 1) NH2 (Transamination) 2) Ph (Transphosphorylation) • Kinases are specialized transferases that regulate metabolism by transferring phosphate from ATP to other molecules.
  • 32. Tyrosine Kinase (Leishmanial, Bacterial and Human)  A tyrosine kinase is an enzyme that can transfer a phosphate group from ATP to a protein in a cell.  Itfunctions as an "on" or "off" switch in many cellular functions.  Tyrosine kinases are a subclass of protein kinase.  The phosphate group is attached to the amino acid tyrosine on the protein.  Tyrosine kinases are a subgroup of the larger class of protein kinases that attach phosphate groups to other amino acids (serine and threonine).  Phosphorylation of proteins by kinases is an important mechanism in communicating signals within a cell (signal transduction) and regulating cellular activity, such as cell division.  Protein kinases as drug targets in bacteria and Leishmania
  • 33.
  • 34. Tyrosine kinase human • Tyrosine kinase mainly helps in cell cycle progression. • Tyrosine kinase helps in transmitting mitogenic signals . • Tyrosine kinase is useful in regulating cell processes. • Tyrosine kinase(protein) transforms normal cell into neoplastic cell . • Tyrosine kinase is regulate by following mechanism 1) protein- protein interaction 2) phosphorylation 3) Intercellular sequestration (binding of Iron ion with cell) 4) Proteolytic degradation of kinases
  • 35. Bacterial tyrosine kinase Protein Tyrosine kinase also found in bacteria and classified as kinase . They are involved in several biological function 1. Protein biosynthesis 2. Antibiotic resistance 3. Virulence mechanism(harmfulness of disease) 4. Polysaccharide synthesis
  • 36. 1. Tyrosine Kinase Inhibitors eg: Imatinib, Dasatinib, and Nilotinib. 2. Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitors eg: Gefitinib, Lapatinib. 3. Vascular Endothelial Growth Factor Tyrosine Kinase Inhibitors eg. Semaxinib, Vatalanib, Sunitinib, Sorafenib. Tyrosine kinase inhibitors 1 . Lapatinib it is used as non- selective kinase inhibitor. It is an orally active chemotherapeutic agent it is used in solid cancers it is also in breast cancer therapy
  • 37. Tyrosine kinase inhibitors 3. Gefitnib it inhibit tyrosine kinase domain of epidermal growth factor receptor . Therefore, it is only effective in cancers with mutated and overactive EGFR. it is used in pancreatic, Breast, Lung cancer. 4. Erlotinib it is used as non- selective tyrosine protein kinase inhibitor of epidermal growth factor receptor. Mechanism of action : Inhibitors act as segment of the kinase domain that fixes the enzyme in a closed or nonfunctional state, in which the protein is unable to bind its substrate/phosphate donor, ATP.
  • 38. Class 3. Hydrolases- • Add water across a bond, hydrolyzing it A-B + H₂O --------) AOH + BH • These enzymes catalyze the hydrolytic cleavage of C-O, C-N, C-C and some other bonds, which divide large molecule in small. • Carried out important degradative reactions in the body during digestion like protease convert protein to amino acids. • Examples of common hydrolases are Esterase, Protease, lipase, Glycosidase. • These enzymes are usually names of substrate followed by ‘ase’ e.g penicillinase , urease etc.
  • 39. Human factor Xa • An important type of hydrolase enzyme which favor blood coagulation. • Factor Xa generated from factor X by the action of Ca++ and phospholipids the form Xa then combine with Va to form prothrombinase complex which transform prothrombin to thrombin. • It is produce by activation of zymogens by intrinsic or extrinsic factor. • It is component of prothrombinase complex which transform prothrombin to thrombin.
  • 41. Inhibitor • Rivaroxaban it is synthetic inhibitor of factor Xa of anticoagulant class and act directly on factor Xa in coagulation cascade without using anti thrombin as mediator. it is used in atrial fibrillation and appears effective in embolic strokes. It causes bleeding in G.I
  • 42. mechanism • Rivaroxaban inhibits both free Factor Xa and Factor Va bound in the prothrombinase complex • It is a highly selective direct Factor Xa inhibitor with oral bioavailability and rapid onset of action. • Inhibition of Factor Xa interrupts the intrinsic and extrinsic pathway of the blood coagulation cascade, inhibiting both thrombin formation and development of thrombi. • It allows predictable anticoagulation and dose adjustments and routine coagulation monitoring as well as dietary restrictions are not needed.
  • 43. Bacterial serine protease Location : animals ,plants , archaea , and viruses. • Protease mainly performs proteolysis and causes catabolism by hydrolysis of peptide bond that linked amino acid together in polypeptide chain.
  • 44. • A protease (also called peptidase or proteinase) is any enzyme that: • performs proteolysis; protein catabolism by hydr olysis of peptide bonds. • Proteases have evolved multiple times, and different classes of protease can perform the same reaction by completely different catalytic mechanisms.
  • 45. mechanism : A comparison of the two mechanisms used for proteolysis. enzyme is shown in black, substrate protein in red and water in blue. The top panel shows 1-step hydrolysis where the enzyme uses an acid to polarise water which then hydrolyses the substrate. The bottom panel shows 2-step hydrolysis where a residue within the enzyme is activated to act as a nucleophile (Nu) and attack the substrate. This forms an intermediate where the enzyme is covalently linked to the N-terminal half of the substrate. In a second step, water is activated to hydrolyse this intermediate and complete catalysis.
  • 46. classification • Serine proteases : using serine alcohol • Cysteine proteases : using cystine thoil • Aspartate proteases : using aspartate carboxylic acid • Threonine proteases : using threonine secondary alcohol • Glutamic acid proteases :using Glutamic carboxylic acid • Metallo proteases : using metal ,zinc • Asparagine peptide lyases :involve asparagine.
  • 47. inhibitors • E-64 The compound was first isolated and identified from Aspergillus japonicus in 1978 Mechanism : It is an epoxide which irreversibly inhibit cystine peptidases. it inhibit cystine peptidases such as papain , calpin , catespin , staphopain . Used : anticancer agent as Bladder carcinoma .
  • 48. Metalloproteases • This are enzymes comprising of metal ion at their active site and causing protein degradation by hydrolysis of peptide bond. • The enzymes uses following metal ion at active site : Zn , Mn, CO etc.
  • 49. Metalloprotease inhibitors • Metalloprotease inhibitors are cellular inhibitors of the Matrix metalloproteinases (MMPs). • MMPs belong to a family of zinc-dependent neutral endopeptidases. • These enzymes have the ability to break down connective tissue. • The expression of MMPs is increased in various pathological conditions like inflammatory conditions, metabolic bone disease, to cancer invasion, metastasis and angiogenesis. • Examples of diseases are, hepatitis, glomerulonephritis, atherosclerosis, asthma, autoimmune disorders of skin
  • 50. inhibitors • Marimastat • used in the treatment of cancer, • Marmiastat is an angiogenesis and metastasis inhibitor. • As an angiogenesis inhibitor it limits the growth and production of blood vessels. • As an antimetatstatic agent it prevents malignant cells. • it is an antineoplastic drug and it act as broad spectrum metalloproteinase inhibitor
  • 51. mechanism • Marimastat is a broad spectrum matrix metalloprotease inhibitor. • It mimics the peptide structure of natural MMP substrates and binds to matrix metalloproteases, thereby preventing the degradation of the basement membrane by these proteases. • This antiprotease action prevents the migration of endothelial cells needed to form new blood vessels. • Inhibition of MMPs also prevents the entry and exit of tumor cells into existing blood cells, thereby preventing metastasis
  • 52. • Batimastat It is anticancer drug belonging to class angiogenisis inhibitor . It acts as metalloproteinase inhibitor by mimicking natural peptides like MMP.
  • 53. MECHANISM • Angiogenesis inhibitors are unique cancer- fighting agents because they tend to inhibit the growth of blood vessels rather than tumor cells. • Angiogenesis inhibitor therapy does not necessarily kill tumors but instead may prevent tumors from growing. Therefore, this type of therapy may need to be administered over a long period
  • 54. Angiotensinogen converting Enzyme (ACE)  ACE is membrane bound enzyme and also metalloproteinase enzyme. Causes hydrolysis of dipeptide fragment from end decapeptide called Angiotensin I to give octapeptide Angiotensin II .  Angiotensin II causes constriction of blood vessels and hence rise in Blood pressure.  It stimulate thrist, Aldosterone secretion, ADH stimulation, increases Na+/H+ exchanger activity.
  • 55.
  • 56. ACE INHIBITORS ACE inhibitors causes inhibition of production of angiotensin II. Eg: Captopril, enalapril, lisinopril, Perindopril, fosinopril, ramipril , imidapril, Benazepril etc. Captopril MECHANISM OF ACTION • It inhibit ACE • It has vasodilatation and inhibition of some renal function activities. • It has shown mood elevating properties in some patient. • Uses- In treatment of hypertension and CHF
  • 57. LISINOPRIL • Lisinopril is an ACE Inhibitor, meaning it blocks the actions of angiotensin converting enzyme (ACE) in the renin-angiotensin- aldosterone system (RAAS). • keeping Angiotensin I from being converted to Angiotensin II. The inhibition of this system causes an overall decrease in blood pressure.
  • 58. CARBOXYPEPTIDASES • It is an polypeptidases obtained by breakdown of proteins like trypsin , chymotrypsin etc. • It mainly contain groups like –SH , Mg , Zn. • carboxypeptidase is a protease enzyme that hydrolyzes (cleaves) a peptide bond at the carboxyl- terminal (C-terminal) end of a protein or peptide. (Contrast with an aminopeptidase, which cleaves peptide bonds at the other end of the protein.) • Humans, animals, and plants contain several types of carboxypeptidases that have diverse functions ranging from catabolism to protein maturation.
  • 59. • Classification • A) on basis of active site 1)Enzymes that use a metal in the active site are called "metallo-carboxypeptidases 2) carboxypeptidases that use active site serine residues are called "serine carboxypeptidases 3) Those that use an active site cysteine are called "cysteine carboxypeptidase
  • 60. B) On basis of preference to substrate 1) Carboxypeptidases that have a stronger preference for those amino acids containing aromatic or branched hydrocarbon chains are called carboxypeptidase A (A for aromatic/aliphatic) 2) Carboxypeptidases that cleave positively charged amino acids (arginine, lysine) are called carboxypeptidase B (B for basic). 3) A metallo-carboxypeptidase that cleaves a C-terminal glutamate from the peptide N-acetyl-L-aspartyl-L- glutamate is called "glutamate carboxypeptidase
  • 61. Phisological role • In digestion of food. • In catabolism • Help in mature proteins or regulate biological process. • In biosynthesis of neuroendocrine peptides such as insulin required carboxypeptidase. • Also function in blood clotting,growth factor production and wound healing.
  • 62. Mechanism • An enzyme which hydrolyses (cleaves) the peptide bond of the COOH terminal amino acid from a peptide; • carboxypeptidase A removes aromatic or branched hydrocarbons, • while carboxypeptidase B removes positively charged terminal lysine or arginine amino acid residues
  • 63. Inhibitors • In molecular biology, the carboxypeptidase A inhibitor family is a family of proteins which is represented by the well-characterised metallocarboxypeptidase • A inhibitor (MCPI) from potatoes. • It is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only and are resistant to fragmentation by proteases. • The potato inhibitor is synthesized as a precursor, having a 29 amino acid N-terminal signal peptide, a 27 amino acid pro-peptide, the 39 amino acid mature inhibitor region and a 7 amino acid C-terminal extension. • The 7 amino acid C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates. •The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this family, from potato, tomato and henbane, which have been incorrectly described as metallocarboxypeptidase inhibitors
  • 64. Class 4. Lyases • In biochemistry, a lyase is an enzyme that catalyzes the breaking (an "elimination" reaction) of various chemical bonds by means other than hydrolysis (a "substitution" reaction) and oxidation, often forming a new double bond or a new ring structure. • The reverse reaction is also possible (called a "Michael addition"). For example, an enzyme that catalyzed this reaction would be a lyase: ATP → cAMP + PPiLyases • Differ from other enzymes in that they require only one substrate for the reaction in one direction, but two substrates for the reverse reaction. • Remove a group from or add a group to double bonds. • Add water, ammonia or carbon dioxide across double bonds, or remove these elements to produce double bonds • In the common names, expressions like decarboxylase, aldolase, dehydratase (in case of elimination of CO22, aldehyde, or water) are used
  • 65. • The lyases catalyzes the removal of small molecule from larger substrate molecule. • The lyases shows reversible reaction and catalyzes the addition of smaller molecule to larger substrate. • They are classified on basis linkage they attack like c-c ,c-o , c-n , c-s , c-x
  • 66. DOPA decarboxylase • It catalyzes several different decarboxylation reactions such as • 1. L DOPA to dopamine • 2. 5-HTP to serotonin • 3. L-Histidine to Histamine • 4. Tryptophan to tryptamine Role: play a important role in the synthesis of epinephrine (Neurotransmitter). Dopamine is catecholamine, plays an important role in the human brain body that it reward motivated behavior. Parkinsons diseases is caused by loss of dopamine secreting area in brain.
  • 67.
  • 68. DOPA Carboxylase inhibitors • Used in treatment of several nervous system diseases like Parkinson's diseases. • Eg. Carbidopa. • Is the drug used given to patient with Parkinson's disease. • It inhibit the peripheral metabolism of levodopa. • That is allows a greater portion of peripheral levodopa to cross BBB for central nervous system effect.
  • 69. Carbonic Anhydrase • Carbonic Anhydrase is a zinc protein complex. • Location in RBCs also small amount in muscle tissues, pancreases and never found in plasma. • The enzyme also found in some more amount in parietal cells of stomach where it is involved in secretion of H+. • H+ generated is exchanged for filtered Na+ in luminal fluid (Kidney) • At the lung side the reaction in the RBCs start diffusion of O₂ from alveolar air in to RBCs. • The O₂ combine with Hb to form ( H.HbO₂) being strong acids and ionizes in HbO₂¯ and H⁺. • The H⁺ combine with HCO3¯ form H₂CO3 at site of tissues. • The form carbonic acid which decomposes in the presence of CA to form H₂O and CO₂.
  • 70.
  • 71. Carbonic anhydrase inhibitor • Carbonic anhydrase inhibitors are a class of pharmaceuticals that suppress the activity of carbonic anhydrase. • Their clinical use has been established as anti-glaucoma agents, diuretics, antiepileptics, in the management of mountain sickness, Gastric & duodenal ulcers, hypertension, neurological disorders, osteoporosis.
  • 72. 1. Acetazolamide, • sold under the trade name Diamox among others, is a medication used to treat glaucoma, epilepsy, Mountain sickness, periodic paralysis, hypertension, and heart failure. • It may be used long term for the treatment of open angle glaucoma and short term for acute angle closure glaucoma. 2. Diuretics • Dorzolamide • Methazolamide • Brinzolamide • dichlorphenamide
  • 73. 3. Brinzolamide • (Tradenames Azopt, Alcon Laboratories, Befardin, Fardi Medicals, is a carbonic anhydrase inhibitor used to lower intraocular pressure in patients with open-angle glaucoma or ocular hypertension. 4. Topiramate (brand name Topamax) is a broad- spectrum anticonvulsant(antiepilepsy) drug
  • 74. 5.Natural Inhibitors Ellagitannins extracted from the pericarps of Punica granatum, the pomegranate. • such as punicalin, punicalagin, granatin B,gallagyldilactone, casuarinin, pedunculagin and tellimagrandin I, are carbonic anhydrase inhibitors.
  • 75. Histidine decarboxylase • Histidine decarboxylase is mainly involved in production histamine from histidine with help of vitamin B6. Histidine decarboxylase • Histidine ------------- histamine Histidine decarboxylase Vit B6 Vit B6
  • 76. Physiological Role • It dilates blood capillaries • Lowers blood pressure • It elevates secretion of gastric juice • It elevates secretion of saliva • It causes contraction of involuntary muscle • It elevates tone of bronchiolar tissues • It controls blood circulation in normal organism
  • 77. inhibitors • Tritogualine • Diphenhyramines • Cyproheptadine • Ranitidine • Cimetidine • MOA This all are histidine decarboxylase inhibitors are used as antihistaminic agents. Role : it is used in treatment of ulcer It is used in treatment of allergic rhinitis It is used to treat allergic reactions Bronchial asthma Anaphylactic shock Blurring of vision Hypotension
  • 78. Esterase • An esterase is hydrolase enzyme that splits ester into acid and alcohol in chemical reaction with water called hydrolysis. RCOOR’ H2O RCOOH + R’OH • Classification • Acetylesterase e.g cholinesterase • Thiol esterase hydrolases e.g Thiol esterase • Phosperic monoester hydrolase e.g alkaline phosphatase • Sulfuric ester hydrolase • Diphosperic monoester hydrolase • Phosperic triester hydrolase • Sulfuric ester hydrolases
  • 79. Acetylcholine Esterase (AchE) • Ach It is neurotransmitter for parasympathetic nervous system stimulation of parsasympathetic nervous system induces constriction of pupil and bronchi • Decrease in heart activity • Increase in activity of digestive system i.e salivation. • Motility of intestine is also increased. • The free Ach present in blood and other tissue get hydrolyzed by enzyme AchE present in serum.
  • 80.
  • 81. AchE inhibitors • Ach present in blood and tissue get hydrolyzed by Acetylcholine Esterase into acetic acid and choline. • Its inhibitors used in treatment of Treatment of myasthenia gravis , Glaucoma, Alzheimer’s. • MAO: it inhibit the AchE reversibly or irreversibly and increase Ach level in blood. • Examples 1. Reversible 2. Irreversible • Physostigmine Organophosphrorous compounds and • Neostigmine Carbamates. • Rivastigmine • Donezepil • Galantamine • Tacrine
  • 82. • Physostigmine : it is cholinesterase inhibitor used in treatment of Parkinson diseases • Rivastigmine it is cholinesterase inhibitor used in treatment of Parkinson diseases • Donezepil it is centrally acting reversible cholinesterase inhibitor used in treatment of Alzheimer diseases • Galantamine it is an alkaloid obtained from flower of Galanthus caucasius. It is reversible cholinesterase inhibitor • Tacrine it is centrally acting reversible cholinesterase inhibitor used in treatment of Alzheimer diseases
  • 83. Phospodiestarese • This enzyme hydrolyzed cyclic phosphate ester of AMP & GMP • AMP & GMP are substrate of enzyme but shows different active site. Reaction Cyclic Phosphate ester AMP & GMP. PD
  • 84. PDE1 • PDE1 (phosphodiesterase type 1) • is a phosphodiesterase enzyme also known as calcium- and calmodulin-dependent phosphodiesterase. • It is one of the 11 families of phosphodiesterase (PDE1-PDE11). • PDE1 has three subtypes, PDE1A, PDE1B and PDE1C which divide further into various isoforms. • The various isoforms exhibit different affinities for cAMP and cGMP
  • 85. Physiological Role • Intracellular second messengers such as cGMP and cAMP undergo rapid changes in concentration in a response to a wide variety of cell specific stimuli. • The role of PDE1 enzymes is to degrade both cGMP and cAMP. • Binding of PDE to cGMP and cAMP, respectively • The various isoforms exhibit different affinities for cAMP and cGMP. PDE1A and PDE1B preferentially hydrolyze cGMP, • whereas PDE1C degrades both cAMP and cGMP with high affinity. • For example, in airway smooth muscles of humans and other species, generic PDE1 accounts for more than 50% of the hydrolytic activity of cyclic nucleotides. • It has been seen that PDE1 produces strong effects on agonist- induced cAMP signaling but has little effect on the basal cAMP level
  • 86. PDE1 Inhibitors • Many compounds reported as PDE1 inhibitors do not interact directly with the catalytic site of PDE1 but interact during activation, either at the level of calmodulin binding sites such as compound KS505a or directly on Ca2+/calmodulin such as bepril, flunarizine and amiodarone • Initially PDE1 inhibitors were claimed to be effective vascular relaxants. Also it is now known that such inhibitors are in fact equally active against PDE5. Those inhibitors include e.g. zaprinast. • Nimodipine is a dihydropyridine that antagonizes/blocks specifically L-type Ca2+-channel, and described as a PDE1 inhibitor. • Vinpocetine was described as a specific inhibitor of basal and calmodulin-activated PDE1. This effect leads to an increase of cAMP over cGMP. It is also equally effective against PDE5.
  • 87. PDE 5
  • 88. PDE5 inhibitors • Sildenafil, tadalfil,vardenafil are phospodiestarese 5 inhibitors used in treatment of erectile dysfunction & maintaining desired lifestyle. • Role • Anti-inflammatory • Vasodilator • Smooth muscle relaxant. • Antidepressant • Antithrombotic • Cardio tonic • Improve cognitive function.
  • 89. Isomerases • Class 6. Isomerases-. • These enzymes catalyze geometric or structural changes within one molecule. • According to the type of isomerism (interconvert isomeric structures by molecular rearrangements) • They may be called, cis-trans-isomerases, isomerases, tautomerases, mutases and L to D isomerase, • They are classified based on type of reaction • 1) Racemases 2) Epimerases • E.g alalnineracemase , Glucose phosphate isomrerases etc
  • 90. Thymidylate synthase (human & Fungal) • This enzyme catalyze the methylation of deoxy uridine monophosphate(dUMP) into deoxy thymidine monophosphate (dTMP) using 5, 10, methylene tetra phosphate as a coenzyme. Thymidylate synthase dUMP -------------------------- dTMP
  • 91. Thymidylate synthetase in human & Fungi • Thymidylate synthase is available from bacterial version from “E-COLI “ by using recombinant DNA technology . • The bacterial enzyme is not identical to human but are similar.
  • 92. Thymidylate Synthase Inhibitors • The inhibitors mainly block action of Thymidylate synthase • They mainly block synthesis of DNA . • Types of inhibitors are 1) CB 3717 2) 5-Fluro uracil 3) Raltiterxed
  • 93. CB 3717 • MECHANISM the CB 3717 contains PTERIDINE RING which mainly act as binding interaction to amino acid – “ALA-263” , ” ARG-21” and also form hydrogen bonding with water molecule and inhibit the action of Thymidylate synthase . It mainly act as anti-tumor agent.
  • 94. 5-flourouracil • It is Oncology Drug and used as colorectal cancer . • It is analog of 5-fluorinated pyrimidine. • Fluorouracil (5-FU), sold under the brand name Adrucil among others, is a medication used to treat cancer.
  • 95. mechanism • 5-FU acts in several ways, but principally as a thymidylate synthase (TS) inhibitor. • Interrupting the action of this enzyme blocks synthesis of the pyrimidine thymidine, which is a nucleoside required for DNA replication.
  • 96. Raltitrexed • Raltitrexed is chemically similar to folic acid and is in the class of chemotherapy drugs which inhibit enzymes: DHFR, thymidylate synthase. • By inhibiting Thymidylate synthase (TS), thus formation of precursor pyrimidine nucleotides, raltitrexed prevents the formation of DNA and RNA, which are required for the growth and survival of both normal cells and cancer cells.
  • 97. PHOSPOFRUCTOKINASE ( Leishmanial) • Phospofructokinase is an kinase enzyme that phosphorylate fructose 6 phosphate in glycolysis to fructose 1,6, diphosphate . • This enzyme catalyzed transfer of phosphoryl group from ATP. Fructose 6 Phosphate + ATP --- Fructose1, 6 diphosphate + ADP. • PFKs It exist as Homotetramer in bacteria and mammals and as octamer in yeast . • PFKs Deficiency of it leads to glycogenesis type- VII ( Tarui’s disease) nausea, vomiting, muscle cramps ,myoglobunuria. etc
  • 98. • Types of PFK • 1) Phospofructokinase – 1 : 6 –Phospofructokinase , Phospohexakinase • 2) Phospofructokinase -2 :Phospofructo kinase 2 • 3) 6 -Phospofructokinase -1 : It promote conversion of fructose 6 phosphate to fructose 1,6, diphosphate . • 4) 6 -Phospofructokinase -2 :it is bifunctional enzyme that act as both kinase and as phosphate by regulating synthesis of fructose 2,6 biphosphate and transformation to fructose 6 phosphate. • Role of PFK • It is important enzyme in all living life. • It perform conversion of fructose 6- phosphate to fructose 1,6-bisphosphate.
  • 99. PFKs inhibitors PFKs inhibitors is represented by sulforaphane an isothyocynate derivatives are mainly found in cruciferous vegetable, Such as broccoli. Synthetic examples of inhibitors. • Salicylic acid • Acetyl salicylic acid MECHANISM This mainly inhibit PFK activity and glucose metabolism and decrease cell viability ,and PKFS activity in breast cancer .