Dave de Roure's talk on myExperiment, including thoughts on protocol and workflow sharing and online communities. Presented at the Open Science workshop at the Pacific Symposium on Biocomputing, January 5th, 2009

1. The myExperiment approach to Open Science David De Roure Carole Goble Jiten Bhagat Don Cruickshank

2. scientists Graduate Students Undergraduate Students experimentation Data, Metadata Provenance Workflows Ontologies Digital Libraries The social process of Science 2.0 Local Web Repositories Virtual Learning Environment Technical Reports Reprints Peer-Reviewed Journal & Conference Papers Preprints & Metadata Certified Experimental Results & Analyses

3. Sharing pieces of process Carole Goble and David De Roure, Curating Scientific Web Services and Workflows , EDUCAUSE Review, vol. 43, no. 5 (September/October 2008) http://usefulchem.wikispaces.com/page/code/EXPLAN001 http://www.microsoft.com/mscorp/tc/trident.mspx http://www.mygrid.org.uk/tools/taverna/

10. “ Do I want my Science associated with a medium like this?”

12. Ownership and Attribution The most important aspect of myExperiment Designed by scientists

15. Exporting packs

16. 24/5/2007 | myExperiment | Slide

17. Google Gadgets Bringing myExperiment to the iGoogle user

18. Taverna Plugin Bringing myExperiment to the Taverna user

19. Facebook

20. PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX myexp: <http://rdf.myexperiment.org/ontology#> PREFIX sioc: <http://rdfs.org/sioc/ns#> select ?friend1 ?friend2 ?acceptedat where {?z rdf:type <http://rdf.myexperiment.org/ontology#Friendship> . ?z myexp:has-requester ?x . ?x sioc:name ?friend1 . ?z myexp:has-accepter ?y . ?y sioc:name ?friend2 . ?z myexp:accepted-at ?acceptedat } All accepted Friendships including accepted-at time Semantically-Interlinked Online Communities SPARQL endpoint

23. e-Laboratory Lifecycle

25. Content Capture and Curation Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed seed refine validate seed Automated refine validate seed Reuse and Symbiosis