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Pedigree Analysis
Classical Genetics

• Mendelian inheritance describes
  inheritance patterns that obey two laws
  – Law of segregation
  – Law of independent assortment
• Simple Mendelian inheritance involves
  – A single gene with two different alleles
  – Alleles display a simple dominant/recessive
    relationship
• Consider, for example, the traits that Mendel studied
  Wild-type (dominant) allele Mutant (recessive) allele
  Purple flowers              White flowers
  Axial flowers               Terminal flowers
  Yellow seeds                Green seeds
  Round seeds                 Wrinkled seeds
  Smooth pods                 Constricted pods
  Green pods                  Yellow pods
  Tall plants                 plants

• Another example is from Drosophila
  Wild-type (dominant) allele Mutant (recessive) allele
  Red eyes                    White eyes
  Normal wings                Miniature wings
• Human genetic diseases caused by
  recessive mutant alleles
  – The mutant alleles do not produce fully
    functional proteins
Lethal Alleles
• Essential genes are those that are
  absolutely required for survival
  – The absence of their protein product leads to a
    lethal phenotype
     • It is estimated that about 1/3 of all genes are
       essential for survival
• Nonessential genes are those not
  absolutely required for survival
• A lethal allele is one that has the potential
  to cause the death of an organism
  – These alleles are typically the result of
    mutations in essential genes
  – usually recessive, but can be dominant
Lethal Alleles
• Many lethal alleles prevent cell division

• Some lethal allele exert their effect later in life
   – Huntington disease
      • Characterized by progressive degeneration of the nervous
        system, dementia and early death
      • The age of onset of the disease is usually between 30 to 50


• Conditional lethal alleles may kill an organism only
  when certain environmental conditions prevail
   – Temperature-sensitive (ts) lethals
      • A developing Drosophila larva may be killed at 30 C
      • But it will survive if grown at 22 C
• Every gene carries information telling the
  body how to make a particular protein.
  – Adult cells have two copies of each gene.
  – If one copy of the gene doesn’t work, the cell
    has a backup.


• New versions of genes can be produced by
  mutations
  – These new alleles can produce proteins that
    either
     • Do not work
     • Or do something they’re not supposed to
• Thus any condition associated with this is
  referred to as a genetic disease
• Cystic fibrosis (CF)
  – A recessive disorder of humans
  – About 3% of caucasians are carriers
  – The gene encodes a protein called the cystic
    fibrosis transmembrane conductance
    regulator (CFTR)
    • The CFTR protein regulates ion transport across
      cell membranes
  – The mutant allele creates an altered CFTR
    protein that ultimately causes ion imbalance
    • This leads to abnormalities in the pancreas, skin,
      intestine, sweat glands and lungs
Example: Cystic fibrosis
The cell membranes of the cells lining the lungs and air
passages contain CF membrane proteins
                       Cl-
                                Cl-




   Cell membrane                 Cl-    CF membrane
                                          proteins
                           Cl-

The CF protein pumps chloride ions from one side of the
membrane to the other
The CF protein produces a higher concentration of chloride
ions on one side of the membrane than the other
                       Cl-                    H2O
                              Cl-
                                      Cl-
             Cl-

                     H2O          Cl-     H2O




     Cell membrane                 Cl-      H2O
                     H2O
                             Cl-
                                    H2O

Water molecules follow the chloride ions across the semi-
permeable cell membranes by… …osmosis.
The body uses the CF chloride pump to move water into
secretions like the mucus found in the trachea and sweat.



If your cells cannot make working chloride pumps, your
mucus becomes too thick and sticky due to lack of water


However, to make a functioning chloride pump, each cell
only needs one good copy of the gene for it.



So, cystic fibrosis is recessive
c   C


Defective gene                             Healthy gene
produces non-working                       produces working
chloride pump                              chloride pump    Cl         -


                                             Cl-   Cl-           Cl-




        Cl-                                              Cl-   Cl-
                          Cl-
  Cl-               Cl-
              Cl-                       This individual does not
                                        suffer from cystic fibrosis,
                                        but is a carrier
Neither copy of the
gene carried by this
individual can                      c    c
produce a working
chloride pump

                                                           Cl-
                                                                             Cl-
                                                  Cl   -
                                                                       Cl-
                                                                 Cl-


                                               This individual will
         Cl   -

   Cl-
                              Cl-              suffer from cystic
                  Cl-   Cl-
                                               fibrosis

         REMEMBER: Genes do NOT exist to cause disease…
                        … defective genes cause disease
Pedigree Analysis

• In the study of human traits, there are
  not controlled parental crosses
• Rely on information from family trees
  or pedigrees
• Pedigree analysis is used to determine
  the pattern of inheritance of traits in
  humans
Pedigree
              Symbols




Figure 2.10
Pedigree Analysis
• Pedigree analysis is commonly used to
  determine the inheritance pattern of human
  genetic diseases
• Genes that play a role in disease may exist as
  – A normal allele
  – A mutant allele that causes disease symptoms
• Disease that follow a simple Mendelian pattern
  of inheritance can be
  – Dominant
  – Recessive
• A recessive pattern of inheritance makes
  two important predictions
  – 1. Two normal heterozygous individuals will
    have, on average, 25% of their offspring
    affected
  – 2. Two affected individuals will produce
    100% affected offspring
• A dominant pattern of inheritance
  predicts that
  – An affected individual will have inherited the
    gene from at least one affected parent
  – Alternatively, the disease may have been
    the result of a new mutation that occurred
    during gamete formation
Figure 2.10

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Pedigree analysis

  • 2. Classical Genetics • Mendelian inheritance describes inheritance patterns that obey two laws – Law of segregation – Law of independent assortment • Simple Mendelian inheritance involves – A single gene with two different alleles – Alleles display a simple dominant/recessive relationship
  • 3. • Consider, for example, the traits that Mendel studied Wild-type (dominant) allele Mutant (recessive) allele Purple flowers White flowers Axial flowers Terminal flowers Yellow seeds Green seeds Round seeds Wrinkled seeds Smooth pods Constricted pods Green pods Yellow pods Tall plants plants • Another example is from Drosophila Wild-type (dominant) allele Mutant (recessive) allele Red eyes White eyes Normal wings Miniature wings
  • 4. • Human genetic diseases caused by recessive mutant alleles – The mutant alleles do not produce fully functional proteins
  • 5. Lethal Alleles • Essential genes are those that are absolutely required for survival – The absence of their protein product leads to a lethal phenotype • It is estimated that about 1/3 of all genes are essential for survival • Nonessential genes are those not absolutely required for survival • A lethal allele is one that has the potential to cause the death of an organism – These alleles are typically the result of mutations in essential genes – usually recessive, but can be dominant
  • 6. Lethal Alleles • Many lethal alleles prevent cell division • Some lethal allele exert their effect later in life – Huntington disease • Characterized by progressive degeneration of the nervous system, dementia and early death • The age of onset of the disease is usually between 30 to 50 • Conditional lethal alleles may kill an organism only when certain environmental conditions prevail – Temperature-sensitive (ts) lethals • A developing Drosophila larva may be killed at 30 C • But it will survive if grown at 22 C
  • 7. • Every gene carries information telling the body how to make a particular protein. – Adult cells have two copies of each gene. – If one copy of the gene doesn’t work, the cell has a backup. • New versions of genes can be produced by mutations – These new alleles can produce proteins that either • Do not work • Or do something they’re not supposed to • Thus any condition associated with this is referred to as a genetic disease
  • 8. • Cystic fibrosis (CF) – A recessive disorder of humans – About 3% of caucasians are carriers – The gene encodes a protein called the cystic fibrosis transmembrane conductance regulator (CFTR) • The CFTR protein regulates ion transport across cell membranes – The mutant allele creates an altered CFTR protein that ultimately causes ion imbalance • This leads to abnormalities in the pancreas, skin, intestine, sweat glands and lungs
  • 9. Example: Cystic fibrosis The cell membranes of the cells lining the lungs and air passages contain CF membrane proteins Cl- Cl- Cell membrane Cl- CF membrane proteins Cl- The CF protein pumps chloride ions from one side of the membrane to the other
  • 10. The CF protein produces a higher concentration of chloride ions on one side of the membrane than the other Cl- H2O Cl- Cl- Cl- H2O Cl- H2O Cell membrane Cl- H2O H2O Cl- H2O Water molecules follow the chloride ions across the semi- permeable cell membranes by… …osmosis.
  • 11. The body uses the CF chloride pump to move water into secretions like the mucus found in the trachea and sweat. If your cells cannot make working chloride pumps, your mucus becomes too thick and sticky due to lack of water However, to make a functioning chloride pump, each cell only needs one good copy of the gene for it. So, cystic fibrosis is recessive
  • 12. c C Defective gene Healthy gene produces non-working produces working chloride pump chloride pump Cl - Cl- Cl- Cl- Cl- Cl- Cl- Cl- Cl- Cl- Cl- This individual does not suffer from cystic fibrosis, but is a carrier
  • 13. Neither copy of the gene carried by this individual can c c produce a working chloride pump Cl- Cl- Cl - Cl- Cl- This individual will Cl - Cl- Cl- suffer from cystic Cl- Cl- fibrosis REMEMBER: Genes do NOT exist to cause disease… … defective genes cause disease
  • 14. Pedigree Analysis • In the study of human traits, there are not controlled parental crosses • Rely on information from family trees or pedigrees • Pedigree analysis is used to determine the pattern of inheritance of traits in humans
  • 15. Pedigree Symbols Figure 2.10
  • 16. Pedigree Analysis • Pedigree analysis is commonly used to determine the inheritance pattern of human genetic diseases • Genes that play a role in disease may exist as – A normal allele – A mutant allele that causes disease symptoms • Disease that follow a simple Mendelian pattern of inheritance can be – Dominant – Recessive
  • 17. • A recessive pattern of inheritance makes two important predictions – 1. Two normal heterozygous individuals will have, on average, 25% of their offspring affected – 2. Two affected individuals will produce 100% affected offspring • A dominant pattern of inheritance predicts that – An affected individual will have inherited the gene from at least one affected parent – Alternatively, the disease may have been the result of a new mutation that occurred during gamete formation