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An integrated dataset for  in silico  drug discovery Simon J Cockell
Drug Repositioning ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],http://www.recyclenow.com
Serendipity or Design? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],http://commons.wikimedia.org/wiki/File:Viagra_in_Pack.jpg
Ondex ,[object Object],[object Object],[object Object],[object Object],http://www.flickr.com/photos/sjcockell/4405616339/
Ondex Input Integration Analysis Parse Parse Parse Map Map Map Visualise Filter Annotate
Ondex & Repositioning ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],http://www.ondex.org/
Data ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Workflow Parse Map http://bsu.ncl.ac.uk/ondex/ib2010_data.xml.gz 2D-Tanimoto G-Sesame DrugBank KEGG HPRD UniProt Dataset v1 Dataset v2 SymAtlas
Chlorpromazine http://en.wikipedia.org/wiki/File:Chlorpromazine-3D-balls.png
Chlorpromazine ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Chlorpromazine Serum Albumin D(2) Dopamine Receptor ,[object Object],- Drug - Target - Protein - has similar structure - has similar sequence - is a
Chlorpromazine
Semantic Motifs Potential Interaction Trimeprazine Chlorpromazine Histamine H1  Receptor drug (2) drug (1) target binds to similar to similar to binds to
Semantic motifs Protein 1 Protein 2 Disease 1 Disease 2 Drug A Drug B
Conclusions ,[object Object],[object Object],[object Object],[object Object]
Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],http://twitter.com/sjcockell

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An integrated dataset for in silico drug discovery

Notes de l'éditeur

  1. Viagra – was pulmonary arterial hypertension – now erectile dysfunction Zyban – was antidepressant – now smoking cessation aid Thallidomide – was anti-emetic – now used for treating cancers & leprosy
  2. 26,693 instances