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MIC 206
   MYCOLOGY


CLASSIFICATION OF FUNGI
Sub-Topic
 Brief Criteria of the Fungi Kingdom
 Differences between the Old and
 Modern Classification
 Difficulties of Classifying Fungi
 Introduction, Basic Characteristics and
 Life Cycles
Definitions
    MYCOLOGISTS
    MYCOLOGY
    MYCOSES
    FUNGUS
    FUNGI
Definitions
  Mycologists : scientists who study
  fungi.
  Mycology : scientific discipline
  dealing with fungi.
  Mycoses : diseases caused in
  animals by fungi.
Fungus versus Fungi
 “Fungus” is used inclusively for a
 heterogenous group of organisms
 that have traditionally been studied
 by mycologists .
 “Fungi” refers to the organisms in the
 Kingdom Fungi, the true fungi, also
 called the “Eumycota”.
How many species of fungi exist?

- 90,000 species of fungi
   described
- 1,700 new species
   described each year
What is a fungus?
A eukaryotic organisms. Fungi are neither
a plants, nor animals
A heterotrophic organism devoid of
chlorophyll that obtains its nutrients by
absorption.
Heterotrophic by absorption.
Reproduced by spores.
The primary carbohydrate storage
product of fungi is glycogen.
Most fungi have a thallus composed of
hyphae (sing. hypha) that elongate by tip
growth.
The fungal thallus consists of hyphae; a
mass of hyphae is a mycelium.
The Characteristics of Fungi
 Structure – hyphae, mycelium, thalus
 Heterotrophic by Adsorption
 Reproduced by Spores
Kingdom                     Fungi

Nutritional Type          Heterotroph

Multicellularity          All, except yeasts
                          Unicellular, filamentous,
Cellular Arrangement
                          fleshy
Food Acquisition Method   Absorptive

Characteristic Features   Sexual and asexual spores

Embryo Formation          None
Structure of fungi
1) The Structure - Hyphae
 Hyphae = tubular units of
 construction
   Tubular
   Hard wall of chitin
   Cross walls may form
    compartments (± cells)
   Multinucleate
   Grow at tips
Modifications of hyphae
Hyphal growth
Hyphae grow from their tips
Mycelium = extensive, feeding web of
hyphae
Mycelia are the ecologically active bodies of
fungi
   This wall is rigid   Only the tip wall is plastic and stretches
Hyphal growth from spore




germinating
   spore
                     mycelium
2. Heterotrophic by Absorption
 Fungi get carbon from organic sources
 Hyphal tips release enzymes
 Enzymatic breakdown of substrate
 Products diffuse back into hyphae

   Nucleus hangs back
      and “directs”



      Product diffuses back
     into hypha and is used
3. Reproduced by
   spores
 Spores are reproductive cells
    Sexual
    Asexual
 Formed:                              Pilobolus sporangia
    Directly on hyphae
    Inside sporangia
    Fruiting bodies




       Amanita fruiting body     Penicillium hyphae
OLD AND
   MODERN
CLASSIFICATION
   OF FUNGI
Old Classification
              Carl Linnaeus (1707-1778) the
              “Father of Taxonomy”
                 “ Minerals exist; plants
                 exist and live; animals
                 exist, live and sense.”
                 Plants without obvious
                 sexual organs were
                 classified in Class
                 Cryptogamia (lichens,
                 fungi, mosses, ferns)
              Fungi are primitive plants
              under this classification of
              organisms.
Old Classification
The Five kingdom system (Whittaker, 1969)
  Eukarya (includes all organism with a
  nucleus      &   membrane         bound
  organelles).
  Plants and Animals are fairly obvious
  Fungi, are very distinct from the other
  kingdoms.
  Kingdom Protista is a “dumping
  ground” for organisms that don’t fit into
  the other eukaryotic kingdoms.
R. H. Whittaker’s 1969 Classification
KINGDOM    CHARACTERISTIC   EXAMPLE

                             
Monera     Prokaryocyte     Bacteria
                            Actinomyces
Protista   Eukaryocyte      Protozoa

Fungi      Eukaryocyte *    Fungi
Plants     Eukaryocyte      Plants
                            Moss
Animals    Eukaryocyte *    Arthropods
                            Mammals
                            Man
Modern Classification
 At least 7 kingdoms are now recognized
 (Patterson & Sogin 1992) :
   Eubacteria,
   Archaebacteria,
   Animalia,
   Plantae,
   Eumycota,
   Stramenopila (Chromista),
   Protoctista (Protozoa, Protista)
Based on molecular evidence: base sequences
from ribosomal RNA (Patterson & Sogin 1992)
Systems of classifying fungi
1) 1860

HOGG proposed the term PROTOCTISTA - fungi and neither
Plant or Animal.
This kingdom composed mostly of unicellular organisms.
The kingdom was later replaced by 2 kingdoms – MYCOTA &
MONERA (prokaryotes) and PROTOCTISTA(eukaryotes).

2) 1947
Microscopes enable study of complex structural
    characteristics.
New classification (WOLF & WOLF, 1947)

3) 1969
Fungi in its own kingdom by WHITTAKER – FUNGI KINGDOM.
Systems of classifying fungi
4) 1998
Modification by MARGUILIS & SCHWARTZ – used characteristics
(structure & function).

• MONERA: Prokaryotes – bacteria, actinomycetes, blue-green
  algae.
• PROTOCTISTA: Eukaryotes – protozoa and other unicellular and
  colonial organisms such as water moulds, slime moulds and
  slime nets.
• FUNGI : Eukaryotes – organisms that lack flagella that develop
  from spores such as yeast, molds, rusts and mushrooms.
• PLANTAE: Eukaryotes – organisms that develop from embryos
  such as liverworts, mosses and vascular plants.
• ANIMALIA: Eukaryotes – organisms that develop from a
  blastula (hollow ball of cells) such a sponges, worms,
  arthropods and mammals.
Marguilis and Schwartz (1998)

Classify the fungi into 3 phyla : Zygomycota,
  Ascomycota and Basidiomycota.
Chytrids (CHYTRIDIOMYCOTA) in the
  Kingdom Proctista.
Deuteromycota with their closest relatives
  that are the Ascomycota and
  Basidiomycota.
Lichen with the Phylum Ascomycota.
Other classifications
MOORE, 1998 (quoted from Pfieffer, M., et al.,
  2001) states that plants, animals and fungi
  can be separated based on how they
  obtain energy.
Plants possess chloroplasts as photosynthetic
  structures used to produce food.
Animals possess mitochondria used for
  internalized digestion.
Fungi excrete enzymes into the food source
  they live within external digestion.
Classification using molecular
research techniques

BALDAUF & PALMER (1993), WAINWRIGHT et
  al. (1993) and HASEGAWA et al (1993)

The above current schemes agree that the
  three major kingdoms are separated
→ thereby confirmed that there are no
   connection between the fungi-plant
   kingdom.
Question

Fill in the blanks of the systematic of classification

1) Kingdom
2) Division / Phylum
3) ___________
4) Order
5) ___________
6) Tribe
7) ___________
8) Species

   Sometimes there are subdivisions and subclasses
Question

Fill in the blanks of the systematic of classification

1) Kingdom
2) Division / Phylum
3) Class
4) Order
5) Family
6) Tribe
7) Genus
8) Species

   Sometimes there are subdivisions and subclasses
Hierarchical Classification

Kingdom Fungi
 Phylum Basidiomycota
   Class Basidiomycetes
    Order Agaricales
      Family Agaricaceae
         Genus Agaricus
           Species:
              Agaricus campestris L.
How are fungi named?
 To determine the correct name for a
 taxon, certain steps must be
 followed, including:
  Effective publication
  Valid publication
   • Description or diagnosis in Latin
   • Clear indication of rank
   • Designated type
Nomenclature
 Nomenclature: the “allocation of
 scientific names to the units a systematist
 considers to merit formal recognition.”
 (Hawksworth et al., 1995. The Dictionary of
 the Fungi). 

 The nomenclature of fungi is governed by
 the International Code for Botanical
 Nomenclature, as adopted by the
 International Botanical Congress.
Reasons why it is not easy to
classify fungi
 Fungi comprise of a broad number of organisms.
 Fungi have various forms depending on the
 environment and conditions in which they grow.
 Many terms being used to describe the
 morphological structures of fungi.
Basic Characteristics and
Life Cycles
 Ascomycota
 (inc.Deuteromycota)
 Basidiomycota
 Zygomycota
Ascomycota – “sac fungi”
 Teleomorphic fungi
   Produce sexual and
    asexual spores
 Sex. – asci
 Asex. – common
 Cup fungi, morels, truffles
 Important plant parasites &
 saprobes
 Yeast - Saccharomyces
 Septate
 Most lichens

                     A cluster of asci with spores inside
Basidiomycota – “club fungi”

 Produce basidiospores and
 sometimes conidiospores
 Sex – basidia
 Asex – not so common
 Long-lived dikaryotic mycelia
 Rusts & smuts – primitive plant
 parasites
 Septate
 Mushrooms, polypores, puffballs
 Enzymes decompose wood
 Mycorrhizas



                               SEM of basidia and spores
Zygomycota – “zygote fungi”
 Conjugation fungi
 Coenocytic
 Sex - zygosporangia
 Asex - common
 Produce sporangiospores
 and zygospores
 Hyphae have no cross walls
 Grow rapidly
 Rhizopus, Mucor
 (opportunistic, systemic
                              Fig 31.6 Rhizopus on
 mycoses)
                                   strawberries
 Mycorrhizas
True Fungi versus Slime Moulds
True fungi:
- those that are hyphal
- possess cell walls throughout most of their life cycle
- are exclusively absorptive in their nutrition.

Slime moulds:
- those that do not form hyphae
- lack cell walls during the phase that they obtain
   nutrients and grow
- are capable of ingesting nutrients by phagocytosis. So
   they are more common to Protista although they
   produce fruiting bodies like fungi.
- The most studied of them are the cellular slime moulds
   and the plasmodial slime moulds or Myxomycetes.
QUESTION
The fungus can never be classified in
Plantae or Animalia?

EXPLAIN WHY?

(Hint ! LOOK AT ITS MOBILITY,
  REPRODUCTION & NUTRITION)

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Chap 1 classification of fungi

  • 1. MIC 206 MYCOLOGY CLASSIFICATION OF FUNGI
  • 2. Sub-Topic Brief Criteria of the Fungi Kingdom Differences between the Old and Modern Classification Difficulties of Classifying Fungi Introduction, Basic Characteristics and Life Cycles
  • 3. Definitions MYCOLOGISTS MYCOLOGY MYCOSES FUNGUS FUNGI
  • 4. Definitions Mycologists : scientists who study fungi. Mycology : scientific discipline dealing with fungi. Mycoses : diseases caused in animals by fungi.
  • 5. Fungus versus Fungi “Fungus” is used inclusively for a heterogenous group of organisms that have traditionally been studied by mycologists . “Fungi” refers to the organisms in the Kingdom Fungi, the true fungi, also called the “Eumycota”.
  • 6. How many species of fungi exist? - 90,000 species of fungi described - 1,700 new species described each year
  • 7.
  • 8. What is a fungus? A eukaryotic organisms. Fungi are neither a plants, nor animals A heterotrophic organism devoid of chlorophyll that obtains its nutrients by absorption. Heterotrophic by absorption. Reproduced by spores. The primary carbohydrate storage product of fungi is glycogen.
  • 9. Most fungi have a thallus composed of hyphae (sing. hypha) that elongate by tip growth. The fungal thallus consists of hyphae; a mass of hyphae is a mycelium.
  • 10. The Characteristics of Fungi Structure – hyphae, mycelium, thalus Heterotrophic by Adsorption Reproduced by Spores
  • 11. Kingdom Fungi Nutritional Type Heterotroph Multicellularity All, except yeasts Unicellular, filamentous, Cellular Arrangement fleshy Food Acquisition Method Absorptive Characteristic Features Sexual and asexual spores Embryo Formation None
  • 13. 1) The Structure - Hyphae Hyphae = tubular units of construction  Tubular  Hard wall of chitin  Cross walls may form compartments (± cells)  Multinucleate  Grow at tips
  • 15. Hyphal growth Hyphae grow from their tips Mycelium = extensive, feeding web of hyphae Mycelia are the ecologically active bodies of fungi This wall is rigid Only the tip wall is plastic and stretches
  • 16. Hyphal growth from spore germinating spore mycelium
  • 17. 2. Heterotrophic by Absorption Fungi get carbon from organic sources Hyphal tips release enzymes Enzymatic breakdown of substrate Products diffuse back into hyphae Nucleus hangs back and “directs” Product diffuses back into hypha and is used
  • 18. 3. Reproduced by spores Spores are reproductive cells Sexual Asexual Formed: Pilobolus sporangia Directly on hyphae Inside sporangia Fruiting bodies Amanita fruiting body Penicillium hyphae
  • 19. OLD AND MODERN CLASSIFICATION OF FUNGI
  • 20. Old Classification Carl Linnaeus (1707-1778) the “Father of Taxonomy” “ Minerals exist; plants exist and live; animals exist, live and sense.” Plants without obvious sexual organs were classified in Class Cryptogamia (lichens, fungi, mosses, ferns) Fungi are primitive plants under this classification of organisms.
  • 21. Old Classification The Five kingdom system (Whittaker, 1969) Eukarya (includes all organism with a nucleus & membrane bound organelles). Plants and Animals are fairly obvious Fungi, are very distinct from the other kingdoms. Kingdom Protista is a “dumping ground” for organisms that don’t fit into the other eukaryotic kingdoms.
  • 22. R. H. Whittaker’s 1969 Classification
  • 23. KINGDOM CHARACTERISTIC EXAMPLE       Monera Prokaryocyte Bacteria Actinomyces Protista Eukaryocyte Protozoa Fungi Eukaryocyte * Fungi Plants Eukaryocyte Plants Moss Animals Eukaryocyte * Arthropods Mammals Man
  • 24. Modern Classification At least 7 kingdoms are now recognized (Patterson & Sogin 1992) :  Eubacteria,  Archaebacteria,  Animalia,  Plantae,  Eumycota,  Stramenopila (Chromista),  Protoctista (Protozoa, Protista)
  • 25. Based on molecular evidence: base sequences from ribosomal RNA (Patterson & Sogin 1992)
  • 26. Systems of classifying fungi 1) 1860 HOGG proposed the term PROTOCTISTA - fungi and neither Plant or Animal. This kingdom composed mostly of unicellular organisms. The kingdom was later replaced by 2 kingdoms – MYCOTA & MONERA (prokaryotes) and PROTOCTISTA(eukaryotes). 2) 1947 Microscopes enable study of complex structural characteristics. New classification (WOLF & WOLF, 1947) 3) 1969 Fungi in its own kingdom by WHITTAKER – FUNGI KINGDOM.
  • 27. Systems of classifying fungi 4) 1998 Modification by MARGUILIS & SCHWARTZ – used characteristics (structure & function). • MONERA: Prokaryotes – bacteria, actinomycetes, blue-green algae. • PROTOCTISTA: Eukaryotes – protozoa and other unicellular and colonial organisms such as water moulds, slime moulds and slime nets. • FUNGI : Eukaryotes – organisms that lack flagella that develop from spores such as yeast, molds, rusts and mushrooms. • PLANTAE: Eukaryotes – organisms that develop from embryos such as liverworts, mosses and vascular plants. • ANIMALIA: Eukaryotes – organisms that develop from a blastula (hollow ball of cells) such a sponges, worms, arthropods and mammals.
  • 28. Marguilis and Schwartz (1998) Classify the fungi into 3 phyla : Zygomycota, Ascomycota and Basidiomycota. Chytrids (CHYTRIDIOMYCOTA) in the Kingdom Proctista. Deuteromycota with their closest relatives that are the Ascomycota and Basidiomycota. Lichen with the Phylum Ascomycota.
  • 29. Other classifications MOORE, 1998 (quoted from Pfieffer, M., et al., 2001) states that plants, animals and fungi can be separated based on how they obtain energy. Plants possess chloroplasts as photosynthetic structures used to produce food. Animals possess mitochondria used for internalized digestion. Fungi excrete enzymes into the food source they live within external digestion.
  • 30. Classification using molecular research techniques BALDAUF & PALMER (1993), WAINWRIGHT et al. (1993) and HASEGAWA et al (1993) The above current schemes agree that the three major kingdoms are separated → thereby confirmed that there are no connection between the fungi-plant kingdom.
  • 31. Question Fill in the blanks of the systematic of classification 1) Kingdom 2) Division / Phylum 3) ___________ 4) Order 5) ___________ 6) Tribe 7) ___________ 8) Species Sometimes there are subdivisions and subclasses
  • 32. Question Fill in the blanks of the systematic of classification 1) Kingdom 2) Division / Phylum 3) Class 4) Order 5) Family 6) Tribe 7) Genus 8) Species Sometimes there are subdivisions and subclasses
  • 33. Hierarchical Classification Kingdom Fungi Phylum Basidiomycota Class Basidiomycetes Order Agaricales Family Agaricaceae Genus Agaricus Species: Agaricus campestris L.
  • 34. How are fungi named? To determine the correct name for a taxon, certain steps must be followed, including:  Effective publication  Valid publication • Description or diagnosis in Latin • Clear indication of rank • Designated type
  • 35. Nomenclature Nomenclature: the “allocation of scientific names to the units a systematist considers to merit formal recognition.” (Hawksworth et al., 1995. The Dictionary of the Fungi).  The nomenclature of fungi is governed by the International Code for Botanical Nomenclature, as adopted by the International Botanical Congress.
  • 36. Reasons why it is not easy to classify fungi Fungi comprise of a broad number of organisms. Fungi have various forms depending on the environment and conditions in which they grow. Many terms being used to describe the morphological structures of fungi.
  • 37. Basic Characteristics and Life Cycles Ascomycota (inc.Deuteromycota) Basidiomycota Zygomycota
  • 38. Ascomycota – “sac fungi” Teleomorphic fungi  Produce sexual and asexual spores Sex. – asci Asex. – common Cup fungi, morels, truffles Important plant parasites & saprobes Yeast - Saccharomyces Septate Most lichens A cluster of asci with spores inside
  • 39. Basidiomycota – “club fungi” Produce basidiospores and sometimes conidiospores Sex – basidia Asex – not so common Long-lived dikaryotic mycelia Rusts & smuts – primitive plant parasites Septate Mushrooms, polypores, puffballs Enzymes decompose wood Mycorrhizas SEM of basidia and spores
  • 40. Zygomycota – “zygote fungi” Conjugation fungi Coenocytic Sex - zygosporangia Asex - common Produce sporangiospores and zygospores Hyphae have no cross walls Grow rapidly Rhizopus, Mucor (opportunistic, systemic Fig 31.6 Rhizopus on mycoses) strawberries Mycorrhizas
  • 41. True Fungi versus Slime Moulds True fungi: - those that are hyphal - possess cell walls throughout most of their life cycle - are exclusively absorptive in their nutrition. Slime moulds: - those that do not form hyphae - lack cell walls during the phase that they obtain nutrients and grow - are capable of ingesting nutrients by phagocytosis. So they are more common to Protista although they produce fruiting bodies like fungi. - The most studied of them are the cellular slime moulds and the plasmodial slime moulds or Myxomycetes.
  • 42. QUESTION The fungus can never be classified in Plantae or Animalia? EXPLAIN WHY? (Hint ! LOOK AT ITS MOBILITY, REPRODUCTION & NUTRITION)

Notes de l'éditeur

  1. Fungal mycelia can be huge, but they usually escape notice because they are subterranean. One giant individual of Armillaria ostoyae in Oregon is 3.4 miles in diameter and covers 2,200 acres of forest, It is at least 2,400 years old, and weighs hundreds of tons. (Actually noone has seen this of this extent – but cultures have been taken from soil over that area and all isolates have been found to be the same individual) Ten cubic centimeters of rich organic soil may have fungal hyphae with a surface area of over 300 cm 2
  2. Most enzyme release (and absorption) at tips Proteins and other materials synthesized by the entire mycelium are channeled by cytoplasmic streaming to the tips of the extending hyphae.
  3. Fungi reproduce by releasing spores that are produced either sexually or asexually. The output of spores from one reproductive structure is enormous, with the number reaching into the trillions. Dispersed widely by wind or water, spores germinate to produce mycelia if they land in a moist place where there is food.
  4. Mycologists have described over 60,000 species of ascomycetes, or sac fungi . Ascomycota tend to grow from spore to spore in one year and relate well to living plant tissues There is diverse form in the growth and fruiting structures – yeasts to morels, many intermediate (and small) Asexual reproduction by conidia (externally produced, not in sporangia) Half of the Ascomycota form lichens (evolved 8 or more times in different orders) but not all lichens are Ascomycotes
  5. Most of the 600 zygomycote, or zygote fungi , are terrestrial, living in soil or on decaying plant and animal material. Asexual reproduction in sporangia One zygomycote group form mycorrhizas , mutualistic associations with the roots of plants.