1. Microbial metabolism involves catabolic and anabolic reactions. Catabolism breaks down complex substances into simple ones with energy release, while anabolism uses this energy to synthesize complex substances from simple ones.
2. ATP acts as the universal energy carrier in living organisms. It stores and transfers energy released during catabolism to drive anabolic reactions.
3. Microbes obtain energy and carbon through various metabolic pathways like glycolysis, TCA cycle, and oxidative phosphorylation during aerobic respiration or fermentation during anaerobic respiration.
Methanogenesis or biomethanation is the formation of methane by microbes known as methanogens. Organisms capable of producing methane have been identified only from the domain Archaea, a group phylogenetically distinct from both eukaryotes and bacteria, although many live in close association with anaerobic bacteria.
This document provides an overview of fermentation technology and downstream processing. It defines fermentation as the production of a product by microorganism mass culture. It describes the basic stages of batch fermentation including lag, log, stationary and death phases. It then outlines the main steps in downstream processing including removal of insolubles, product isolation, purification, polishing and packaging. Specific unit operations used at each stage like centrifugation, filtration, chromatography are also explained. The document emphasizes that the level of downstream processing depends on the target product and its end use.
Fermentation is the conversion of carbohydrates into alcohols, carbon dioxide, or organic acids by microorganisms like yeast and bacteria in anaerobic conditions. It results in less energy production than aerobic respiration. Key steps include glycolysis which converts glucose to pyruvate, and alcoholic fermentation which converts pyruvate to ethanol and carbon dioxide. Fermentation is used to produce foods and beverages like beer, wine, yogurt and cheese, as well as treat wastewater.
Environmental microbiology is the study of microbial processes in the environment, microbial communities and microbial interactions. This includes:
Structure and activities of microbial communities
Microbial interactions and interactions with macroorganisms
Population biology of microorganisms
Microbes and surfaces (adhesion and biofilm formation)
Microbial community genetics and evolutionary processes
(Global) element cycles and biogeochemical processes
Microbial life in extreme and unusual little-explored environments
This powerpoint describes the classification of bacteria based on their nutritional requirements. This gives basic ideas to the readers in this particular topic.
Introduction to Environmental Microbiology (by- Meenu Malik)meenumalik3
This document provides an introduction to environmental microbiology. It discusses microscopic organisms such as bacteria, fungi, protozoans, algae, and viruses. It notes that bacteria were some of the earliest life on Earth and can be found nearly everywhere. The document outlines the history of microbiology including early pioneers like Van Leeuwenhoek, Hooke, Pasteur and Jenner. It describes prokaryotic and eukaryotic cells and some of their key structures. Overall, the document provides a high-level overview of microorganisms and their role in environmental microbiology.
1. Microbial metabolism involves catabolic and anabolic reactions. Catabolism breaks down complex substances into simple ones with energy release, while anabolism uses this energy to synthesize complex substances from simple ones.
2. ATP acts as the universal energy carrier in living organisms. It stores and transfers energy released during catabolism to drive anabolic reactions.
3. Microbes obtain energy and carbon through various metabolic pathways like glycolysis, TCA cycle, and oxidative phosphorylation during aerobic respiration or fermentation during anaerobic respiration.
Methanogenesis or biomethanation is the formation of methane by microbes known as methanogens. Organisms capable of producing methane have been identified only from the domain Archaea, a group phylogenetically distinct from both eukaryotes and bacteria, although many live in close association with anaerobic bacteria.
This document provides an overview of fermentation technology and downstream processing. It defines fermentation as the production of a product by microorganism mass culture. It describes the basic stages of batch fermentation including lag, log, stationary and death phases. It then outlines the main steps in downstream processing including removal of insolubles, product isolation, purification, polishing and packaging. Specific unit operations used at each stage like centrifugation, filtration, chromatography are also explained. The document emphasizes that the level of downstream processing depends on the target product and its end use.
Fermentation is the conversion of carbohydrates into alcohols, carbon dioxide, or organic acids by microorganisms like yeast and bacteria in anaerobic conditions. It results in less energy production than aerobic respiration. Key steps include glycolysis which converts glucose to pyruvate, and alcoholic fermentation which converts pyruvate to ethanol and carbon dioxide. Fermentation is used to produce foods and beverages like beer, wine, yogurt and cheese, as well as treat wastewater.
Environmental microbiology is the study of microbial processes in the environment, microbial communities and microbial interactions. This includes:
Structure and activities of microbial communities
Microbial interactions and interactions with macroorganisms
Population biology of microorganisms
Microbes and surfaces (adhesion and biofilm formation)
Microbial community genetics and evolutionary processes
(Global) element cycles and biogeochemical processes
Microbial life in extreme and unusual little-explored environments
This powerpoint describes the classification of bacteria based on their nutritional requirements. This gives basic ideas to the readers in this particular topic.
Introduction to Environmental Microbiology (by- Meenu Malik)meenumalik3
This document provides an introduction to environmental microbiology. It discusses microscopic organisms such as bacteria, fungi, protozoans, algae, and viruses. It notes that bacteria were some of the earliest life on Earth and can be found nearly everywhere. The document outlines the history of microbiology including early pioneers like Van Leeuwenhoek, Hooke, Pasteur and Jenner. It describes prokaryotic and eukaryotic cells and some of their key structures. Overall, the document provides a high-level overview of microorganisms and their role in environmental microbiology.
The document discusses strain improvement, which is the process of manipulating microbial strains to enhance their metabolic capacities. The main methods discussed are selection of natural variants, induced mutants, and use of recombinant technology. Key characteristics for improving strains are selecting for stability, resistance to infection/components, favorable morphology, and tolerance to low oxygen. The goal is to develop strains that can be used commercially.
Microbial metabolites are compounds produced through microbial metabolism. There are two types of microbial metabolism: anabolism which builds molecules and catabolism which breaks molecules down. Primary metabolites are directly involved in growth and development while secondary metabolites are not essential but may provide benefits like preventing competition. Secondary metabolites have industrial applications as antibiotics, pigments, and other products. Microorganisms are isolated from environments like soil and screened to identify strains that produce desired compounds. Fermentation is used to grow cultures and extract secondary metabolites.
A broad module on industrial microbiology is summarized with pictures .It includes the production of vitamins,vaccine ,alcohol,vinegar,steroids,amino acids ,antibiotics .it also includes the general idea on history ,media,equipment,fermentation,procedure ,uses of industrial microbiology .The production of wine,beer and vinegar are mine core interest .Hope may help ....Thank you .
Microbial metabolism involves catabolic reactions that break down molecules and anabolic reactions that build them up. Enzymes catalyze these reactions and require energy from ATP hydrolysis. Cells generate ATP through glycolysis of glucose, the citric acid cycle, and oxidative phosphorylation during aerobic respiration. Fermentation pathways produce ATP without oxygen through alcohol or lactic acid production.
The term “fermentation” is derived from the Latin verb fervere, to boil, thus describing the appearance of the action of yeast on extracts of fruit or malted grain. The boiling appearance is due to the production of carbon dioxide bubbles caused by the anaerobic catabolism of the sugars present in the extract. However, fermentation has come to have different meanings to biochemists and to industrial microbiologists. Its biochemical meaning relates to the generation of energy by the catabolism of organic compounds, whereas its meaning in industrial microbiology tends to be much broader. Fermentation is a word that has many meanings for the microbiologist: 1 Any process involving the mass culture of microorganisims, either aerobic or anaerobic. 2 Any biological process that occurs in the absence of O2. 3 Food spoilage. 4 The production of
GROWTH OF BACTERIA CANNOT BE MEASURED DIRECTLY BY SEEING THEM AS THEY ARE MICROSCOPIC STRUCTURES THEREFORE WE HAVE TO USE SEVERAL METHODS WHICH ARE DESCRIBED IN THIS PRESENTATION
This document discusses the composition and degradation of lignin. It begins by describing the composition of plant cell walls and defining lignin as a complex polymer made up of phenylpropanoid units. It then discusses the chemistry, biosynthesis, and composition of lignin, which varies between plant species. The rest of the document focuses on the biodegradation of lignin, outlining the key enzymes like peroxidases involved and microbes like white rot fungi that can break lignin down. It concludes by discussing methods to improve lignin degradation, including physical and chemical pretreatments, and how lignin inhibits carbohydrate digestibility in roughages.
Control of microbial growth using Physical & Chemical MethodsAFTAB H. ABBASI
The document discusses various physical and chemical methods for controlling microbial growth. It describes physical methods such as heat (boiling, pasteurization, autoclaving), filtration, low temperatures (refrigeration, freezing), and radiation (ultraviolet light, ionizing). Chemical methods discussed include phenols, halogens like iodine and chlorine, and iodophors. The document provides details on the mechanisms of various methods and their applications in sterilization and disinfection.
This PPT is meant for undergraduate students to clear the concepts of Microbial metabolism.
The presentation includes the basics of catabolism and anabolism
Methanogenesis is the biological production of methane through two pathways. It is carried out by methanogenic archaea under strictly anaerobic conditions. These archaea use one-carbon compounds like carbon dioxide, methanol, or methylamines as substrates. They reduce these substrates using coenzymes like coenzyme M, coenzyme F420, methanofuran, and tetrahydromethanopterin to produce methane as the end product through a series of reduction steps. Methanogenesis provides an important source of energy for the methanogenic archaea in environments like wetlands, digestive systems, and anaerobic digesters.
This document discusses the key concepts and goals of industrial microbiology and biotechnology. It explains that these fields involve using microorganisms to achieve specific aims, such as producing antibiotics, amino acids, organic acids, and other useful products. The document outlines various techniques for genetically manipulating microorganisms, preserving strains, growing microbes in controlled environments, and utilizing microbial communities in natural environments for applications like biodegradation. The overall aim is to discuss how microbes can be utilized and manipulated for industrial and biotechnological processes.
Phototrophy, chemotrophy and autotrophy in prokaryotesRahul Kunwar Singh
This document provides information about the microbial physiology course SLS/MIC/C007. The course covers microbial growth, metabolism, and cell structure over 5 units: 1) Phototrophy and Chemotrophy, 2) Respiration, 3) Nitrogen and Sulfur Metabolism, 4) Transport and Communication, and 5) Stress Response. Key topics include photosynthesis, chemolithotrophy utilizing hydrogen, sulfur, and iron oxidation, and carbon fixation pathways such as the Calvin cycle and reverse citric acid cycle that allow autotrophic growth.
AMYLASES AND PROTEASES ARE THE ENZYMES USED A LOT IN FOOD INDUSTRIES FOR THE PRODUCTION OF FOODS. THESE ARE SUPPOSED TO PRODUCE AT A LARGER QUANTITIES IN ORDER TO FULFILL THE DEMANDS FROM THESE INDUSTRIES, THE LARGE SCALE PRODUCTION OF THESE ENZYMES MUST BE CARRIED OUT. THIS METHOD OF LARGER PRODUCTION OF THESE ENZYMES ARE EXPLAINED IN THIS PRESENTATION.
This document discusses sulfur-oxidizing bacteria and their chemolithotrophic metabolism. It provides details on various sulfur-oxidizing bacteria such as Beggiatoa, Thiobacillus, Sulfolobus, and Thiomicrospira. It explains that these bacteria are able to use reduced inorganic sulfur compounds like hydrogen sulfide as electron donors to generate energy through electron transport phosphorylation. The oxidation of these compounds produces sulfuric acid. It also notes that while most sulfur oxidation is aerobic, some bacteria can perform this process anaerobically using nitrate as the terminal electron acceptor.
1. The document discusses various microbial metabolic pathways including glycolysis, fermentation, respiration, photosynthesis, and chemolithotrophy.
2. It defines key concepts in metabolism such as catabolism, anabolism, reduction/oxidation reactions, and describes how ATP and cofactors are used to transfer energy between reactions.
3. Specific pathways are explained including glycolysis, fermentation which regenerates NAD+, aerobic/anaerobic respiration which fully oxidizes pyruvic acid, and photosynthesis which uses light to fix carbon and produce oxygen.
This document discusses airlift fermenters, which are a type of bioreactor. It provides three key points:
1) Airlift fermenters are pneumatic bioreactors that use gas injection and density gradients to circulate liquids without a mechanical agitator, reducing shear stress and heat generation.
2) There are two main types - internal loop fermenters with a central draft tube, and external loop fermenters with separate circulation channels.
3) Airlift fermenters are commonly used for aerobic processes, producing products like single cell proteins, due to their efficiency and ability to handle fragile cells. They have simple designs but require higher gas pressures and throughputs than stirred
This document discusses raw materials used in fermentation processes. It covers various carbon sources like molasses, fruit juices, cheese whey, starches from cereals and tubers. It also discusses cellulosic materials like sulfite waste liquor, wood hydrolysates, and rice straw. Vegetable oils and hydrocarbons can also serve as carbon sources. Ideal fermentation media should satisfy the nutritional needs of microorganisms, support high product yields, use cheap and available raw materials, and not interfere with downstream processing. The type of raw material used depends on factors like cost, availability, and product being fermented.
This document summarizes carbohydrate metabolism in bacteria. It discusses heterotrophic metabolism where bacteria obtain energy from oxidizing organic compounds like carbohydrates. It describes the three main pathways of glucose metabolism - glycolysis, the Krebs cycle, and oxidative phosphorylation. It also discusses fermentation as an anaerobic form of metabolism that generates ATP. Different bacterial species utilize various pathways like glycolysis, the Entner-Doudoroff pathway, or the hexose monophosphate shunt to break down glucose depending on their metabolic capabilities.
Heterotrophic Metabolism
Bacterial Metabolism heterotrophic metabolism is the biological oxidation of organic substances such as glucose to produce ATP and simpler organic (or inorganic) chemicals that the bacterial cell need for biosynthetic or assimilatory activities.
Respiration
Respiration is a kind of heterotrophic metabolism that utilises oxygen and produces 380,000 calories from the oxidation of one mole of glucose. (Another 308,000 calories are wasted as heat.)
Krebs Cycle
The Krebs cycle is the oxidative mechanism in respiration that fully decarboxylates pyruvate (through acetyl coenzyme A). 15 moles of ATP (150,000 calories) are produced by the route.
Glyoxylate Cycle
The glyoxylate cycle, seen in some bacteria, is a variant of the Krebs cycle. The oxidation of fatty acids or other lipid molecules produces acetyl coenzyme A.
Electron Transport and Oxidative Phosphorylation
ATP is produced in the last stage of respiration by a series of electron transfer processes within the cytoplasmic membrane that drive the oxidative phosphorylation of ADP to ATP. For this process, bacteria utilise a variety of flavins, cytochrome and non-heme iron components, as well as several cytochrome oxidases.
The document discusses strain improvement, which is the process of manipulating microbial strains to enhance their metabolic capacities. The main methods discussed are selection of natural variants, induced mutants, and use of recombinant technology. Key characteristics for improving strains are selecting for stability, resistance to infection/components, favorable morphology, and tolerance to low oxygen. The goal is to develop strains that can be used commercially.
Microbial metabolites are compounds produced through microbial metabolism. There are two types of microbial metabolism: anabolism which builds molecules and catabolism which breaks molecules down. Primary metabolites are directly involved in growth and development while secondary metabolites are not essential but may provide benefits like preventing competition. Secondary metabolites have industrial applications as antibiotics, pigments, and other products. Microorganisms are isolated from environments like soil and screened to identify strains that produce desired compounds. Fermentation is used to grow cultures and extract secondary metabolites.
A broad module on industrial microbiology is summarized with pictures .It includes the production of vitamins,vaccine ,alcohol,vinegar,steroids,amino acids ,antibiotics .it also includes the general idea on history ,media,equipment,fermentation,procedure ,uses of industrial microbiology .The production of wine,beer and vinegar are mine core interest .Hope may help ....Thank you .
Microbial metabolism involves catabolic reactions that break down molecules and anabolic reactions that build them up. Enzymes catalyze these reactions and require energy from ATP hydrolysis. Cells generate ATP through glycolysis of glucose, the citric acid cycle, and oxidative phosphorylation during aerobic respiration. Fermentation pathways produce ATP without oxygen through alcohol or lactic acid production.
The term “fermentation” is derived from the Latin verb fervere, to boil, thus describing the appearance of the action of yeast on extracts of fruit or malted grain. The boiling appearance is due to the production of carbon dioxide bubbles caused by the anaerobic catabolism of the sugars present in the extract. However, fermentation has come to have different meanings to biochemists and to industrial microbiologists. Its biochemical meaning relates to the generation of energy by the catabolism of organic compounds, whereas its meaning in industrial microbiology tends to be much broader. Fermentation is a word that has many meanings for the microbiologist: 1 Any process involving the mass culture of microorganisims, either aerobic or anaerobic. 2 Any biological process that occurs in the absence of O2. 3 Food spoilage. 4 The production of
GROWTH OF BACTERIA CANNOT BE MEASURED DIRECTLY BY SEEING THEM AS THEY ARE MICROSCOPIC STRUCTURES THEREFORE WE HAVE TO USE SEVERAL METHODS WHICH ARE DESCRIBED IN THIS PRESENTATION
This document discusses the composition and degradation of lignin. It begins by describing the composition of plant cell walls and defining lignin as a complex polymer made up of phenylpropanoid units. It then discusses the chemistry, biosynthesis, and composition of lignin, which varies between plant species. The rest of the document focuses on the biodegradation of lignin, outlining the key enzymes like peroxidases involved and microbes like white rot fungi that can break lignin down. It concludes by discussing methods to improve lignin degradation, including physical and chemical pretreatments, and how lignin inhibits carbohydrate digestibility in roughages.
Control of microbial growth using Physical & Chemical MethodsAFTAB H. ABBASI
The document discusses various physical and chemical methods for controlling microbial growth. It describes physical methods such as heat (boiling, pasteurization, autoclaving), filtration, low temperatures (refrigeration, freezing), and radiation (ultraviolet light, ionizing). Chemical methods discussed include phenols, halogens like iodine and chlorine, and iodophors. The document provides details on the mechanisms of various methods and their applications in sterilization and disinfection.
This PPT is meant for undergraduate students to clear the concepts of Microbial metabolism.
The presentation includes the basics of catabolism and anabolism
Methanogenesis is the biological production of methane through two pathways. It is carried out by methanogenic archaea under strictly anaerobic conditions. These archaea use one-carbon compounds like carbon dioxide, methanol, or methylamines as substrates. They reduce these substrates using coenzymes like coenzyme M, coenzyme F420, methanofuran, and tetrahydromethanopterin to produce methane as the end product through a series of reduction steps. Methanogenesis provides an important source of energy for the methanogenic archaea in environments like wetlands, digestive systems, and anaerobic digesters.
This document discusses the key concepts and goals of industrial microbiology and biotechnology. It explains that these fields involve using microorganisms to achieve specific aims, such as producing antibiotics, amino acids, organic acids, and other useful products. The document outlines various techniques for genetically manipulating microorganisms, preserving strains, growing microbes in controlled environments, and utilizing microbial communities in natural environments for applications like biodegradation. The overall aim is to discuss how microbes can be utilized and manipulated for industrial and biotechnological processes.
Phototrophy, chemotrophy and autotrophy in prokaryotesRahul Kunwar Singh
This document provides information about the microbial physiology course SLS/MIC/C007. The course covers microbial growth, metabolism, and cell structure over 5 units: 1) Phototrophy and Chemotrophy, 2) Respiration, 3) Nitrogen and Sulfur Metabolism, 4) Transport and Communication, and 5) Stress Response. Key topics include photosynthesis, chemolithotrophy utilizing hydrogen, sulfur, and iron oxidation, and carbon fixation pathways such as the Calvin cycle and reverse citric acid cycle that allow autotrophic growth.
AMYLASES AND PROTEASES ARE THE ENZYMES USED A LOT IN FOOD INDUSTRIES FOR THE PRODUCTION OF FOODS. THESE ARE SUPPOSED TO PRODUCE AT A LARGER QUANTITIES IN ORDER TO FULFILL THE DEMANDS FROM THESE INDUSTRIES, THE LARGE SCALE PRODUCTION OF THESE ENZYMES MUST BE CARRIED OUT. THIS METHOD OF LARGER PRODUCTION OF THESE ENZYMES ARE EXPLAINED IN THIS PRESENTATION.
This document discusses sulfur-oxidizing bacteria and their chemolithotrophic metabolism. It provides details on various sulfur-oxidizing bacteria such as Beggiatoa, Thiobacillus, Sulfolobus, and Thiomicrospira. It explains that these bacteria are able to use reduced inorganic sulfur compounds like hydrogen sulfide as electron donors to generate energy through electron transport phosphorylation. The oxidation of these compounds produces sulfuric acid. It also notes that while most sulfur oxidation is aerobic, some bacteria can perform this process anaerobically using nitrate as the terminal electron acceptor.
1. The document discusses various microbial metabolic pathways including glycolysis, fermentation, respiration, photosynthesis, and chemolithotrophy.
2. It defines key concepts in metabolism such as catabolism, anabolism, reduction/oxidation reactions, and describes how ATP and cofactors are used to transfer energy between reactions.
3. Specific pathways are explained including glycolysis, fermentation which regenerates NAD+, aerobic/anaerobic respiration which fully oxidizes pyruvic acid, and photosynthesis which uses light to fix carbon and produce oxygen.
This document discusses airlift fermenters, which are a type of bioreactor. It provides three key points:
1) Airlift fermenters are pneumatic bioreactors that use gas injection and density gradients to circulate liquids without a mechanical agitator, reducing shear stress and heat generation.
2) There are two main types - internal loop fermenters with a central draft tube, and external loop fermenters with separate circulation channels.
3) Airlift fermenters are commonly used for aerobic processes, producing products like single cell proteins, due to their efficiency and ability to handle fragile cells. They have simple designs but require higher gas pressures and throughputs than stirred
This document discusses raw materials used in fermentation processes. It covers various carbon sources like molasses, fruit juices, cheese whey, starches from cereals and tubers. It also discusses cellulosic materials like sulfite waste liquor, wood hydrolysates, and rice straw. Vegetable oils and hydrocarbons can also serve as carbon sources. Ideal fermentation media should satisfy the nutritional needs of microorganisms, support high product yields, use cheap and available raw materials, and not interfere with downstream processing. The type of raw material used depends on factors like cost, availability, and product being fermented.
This document summarizes carbohydrate metabolism in bacteria. It discusses heterotrophic metabolism where bacteria obtain energy from oxidizing organic compounds like carbohydrates. It describes the three main pathways of glucose metabolism - glycolysis, the Krebs cycle, and oxidative phosphorylation. It also discusses fermentation as an anaerobic form of metabolism that generates ATP. Different bacterial species utilize various pathways like glycolysis, the Entner-Doudoroff pathway, or the hexose monophosphate shunt to break down glucose depending on their metabolic capabilities.
Heterotrophic Metabolism
Bacterial Metabolism heterotrophic metabolism is the biological oxidation of organic substances such as glucose to produce ATP and simpler organic (or inorganic) chemicals that the bacterial cell need for biosynthetic or assimilatory activities.
Respiration
Respiration is a kind of heterotrophic metabolism that utilises oxygen and produces 380,000 calories from the oxidation of one mole of glucose. (Another 308,000 calories are wasted as heat.)
Krebs Cycle
The Krebs cycle is the oxidative mechanism in respiration that fully decarboxylates pyruvate (through acetyl coenzyme A). 15 moles of ATP (150,000 calories) are produced by the route.
Glyoxylate Cycle
The glyoxylate cycle, seen in some bacteria, is a variant of the Krebs cycle. The oxidation of fatty acids or other lipid molecules produces acetyl coenzyme A.
Electron Transport and Oxidative Phosphorylation
ATP is produced in the last stage of respiration by a series of electron transfer processes within the cytoplasmic membrane that drive the oxidative phosphorylation of ADP to ATP. For this process, bacteria utilise a variety of flavins, cytochrome and non-heme iron components, as well as several cytochrome oxidases.
1. The document provides an overview of key concepts in biology including cellular transport mechanisms, cellular respiration, photosynthesis, enzymes, and ATP.
2. It defines different types of cellular transport such as diffusion, osmosis, active transport, endocytosis, and exocytosis. Active transport requires energy and uses carrier proteins to move materials against a concentration gradient.
3. Cellular respiration and photosynthesis are described as processes by which cells generate energy. Cellular respiration breaks down glucose to produce ATP through pathways like glycolysis, the citric acid cycle, and the electron transport chain. Photosynthesis uses light to produce oxygen, ATP, and NADPH through light-dependent and light-independent reactions.
Photosynthesis and cellular respirationDiane Blanco
Photosynthesis and cellular respiration are important biological processes. Photosynthesis occurs in plant leaves and uses carbon dioxide, water, and sunlight to produce glucose and oxygen. It has two stages - the light dependent reactions where ATP and NADPH are produced, and the light independent reactions where carbon is fixed and sugars are assembled. Cellular respiration uses oxygen and glucose to produce ATP through three stages - glycolysis, the citric acid cycle, and oxidative phosphorylation which takes place in mitochondria.
Heterotrophic Metabolism
Bacterial Metabolism heterotrophic metabolism is the biological oxidation of organic substances such as glucose to produce ATP and simpler organic (or inorganic) chemicals that the bacterial cell need for biosynthetic or assimilatory activities.
Respiration
Respiration is a kind of heterotrophic metabolism that utilizes oxygen and produces 380,000 calories from the oxidation of one mole of glucose. (Another 308,000 calories are wasted as heat.)
Chapter 6 life processes 1 (introduction, nutrition and digestion)Rajesh Kumar
1. The document discusses photosynthesis and cellular respiration, the two key processes by which living organisms produce and use energy.
2. Photosynthesis occurs in plants and uses sunlight, carbon dioxide, water and chlorophyll to produce glucose and oxygen. Cellular respiration uses glucose and oxygen to produce energy in the form of ATP.
3. Both processes involve multi-step reactions. Photosynthesis has light-dependent and light-independent reactions, while cellular respiration involves glycolysis, the Krebs cycle, and the electron transport chain.
Cellular respiration is the process by which organisms convert the chemical energy from nutrients into ATP. It occurs in three main stages: glycolysis, the Krebs cycle, and the electron transport chain. Glycolysis breaks down glucose into pyruvate and occurs in the cytoplasm, producing a small amount of ATP. The Krebs cycle further breaks down pyruvate in the mitochondria, producing more ATP and electron carriers. In the electron transport chain, electrons are passed through protein complexes in the mitochondrial membrane, pumping protons and producing the most ATP through chemiosmosis. Oxygen is the final electron acceptor, with carbon dioxide and water as end products.
Metabolism is the set of life-sustaining chemical reactions in organisms that have three main purposes: converting food to energy, building molecular blocks, and eliminating waste. There are two types of metabolic reactions - anabolic reactions that construct molecules and catabolic reactions that break them down. Key metabolic processes in the biosphere include photosynthesis, the Calvin cycle, C4 carbon fixation, cellular respiration, protein synthesis, excretion, and fermentation.
Respiration is the process by which cells convert the chemical energy in nutrients into a usable form, typically ATP. Aerobic respiration uses oxygen to fully break down fuels like glucose, generating much more ATP than anaerobic respiration. Anaerobic respiration occurs without oxygen, using other molecules like sulfate as the terminal electron acceptor. While it generates less ATP than aerobic respiration, it allows organisms to respire in low-oxygen environments. Obligate anaerobes cannot survive exposure to oxygen as it is toxic to them without sufficient defenses like superoxide dismutase that aerobic organisms possess.
How cells harvest or extract energy - Cell respirationVi Lia
Cellular respiration uses a series of metabolic pathways to extract energy from glucose and other food molecules in the form of ATP. It occurs in three main stages: glycolysis, the Krebs cycle in the mitochondria, and the electron transport chain. Glycolysis breaks down glucose into pyruvate and generates a small amount of ATP. Pyruvate then enters the Krebs cycle where more ATP is produced. Electrons extracted from glucose are passed through protein complexes in the electron transport chain, powering ATP synthesis via oxidative phosphorylation. The overall process oxidizes glucose and other fuels completely to carbon dioxide and water, capturing their energy to make approximately 36 ATP molecules per glucose molecule.
This document discusses various ways of categorizing micro-organisms based on their nutritional requirements and metabolic processes. It describes categories such as chemotrophs and phototrophs based on energy sources, and organotrophs and lithotrophs based on reducing power sources. It also discusses categories like heterotrophs and autotrophs based on carbon sources. Further, it summarizes the key stages of aerobic respiration, anaerobic respiration, and the cell respiration process. It provides details on diagnostic tests like the oxidase test and catalase test used to identify microbes.
Bacterial metabolism involves catabolic and anabolic processes. Catabolism breaks down nutrients to release energy through reactions like aerobic respiration, anaerobic respiration, and fermentation. Anabolism uses this energy to build macromolecules. Bacteria take in nutrients like sugars, lipids, nitrogen, and oxygen and break them down extracellularly before transporting subunits into cells for energy generation and biosynthesis through various pathways. Aerobic respiration is most efficient, while anaerobic respiration and fermentation are less efficient in the absence of oxygen.
This document discusses microbial metabolism. It defines anabolism as the synthesis of complex molecules using energy, and catabolism as the breakdown of polymers into simple forms with energy release. Oxidation and reduction reactions are described. Glycolysis and the Krebs cycle are discussed as the first two steps of aerobic respiration, where glucose is oxidized to pyruvate and acetyl CoA respectively. The generation of ATP through substrate level phosphorylation and oxidative phosphorylation is also summarized. Key pathways of glucose catabolism like glycolysis and the TCA cycle are outlined.
This document summarizes microbial metabolism. It describes how hundreds of reactions take place simultaneously in a living cell in an organized manner, collectively called metabolism. Metabolic pathways involve a series of enzymatic reactions to produce specific products. Degradative processes break down complex molecules into simpler ones, releasing energy, while biosynthetic reactions form complex molecules from simple precursors. Key stages of metabolism include breaking biomolecules into building blocks like monosaccharides, converting these into intermediates like pyruvate and acetyl-CoA, and the final oxidation of acetyl-CoA through the Krebs cycle. The document also discusses various metabolic pathways like glycolysis, the pentose phosphate pathway, and the Entner-Doudoroff pathway
This document provides an overview of cellular respiration by discussing its three main stages: glycolysis, the Krebs cycle, and the electron transport chain. It explains that cellular respiration occurs in the mitochondria and releases energy from glucose and other food molecules to produce ATP, the energy currency of cells. The document also compares aerobic and anaerobic respiration, and contrasts how photosynthetic and non-photosynthetic cells generate ATP through these metabolic pathways.
The document outlines photosynthesis and cellular respiration. Photosynthesis uses light energy to convert carbon dioxide and water into glucose and oxygen through light-dependent and light-independent reactions in chloroplasts. Cellular respiration harvests the chemical energy stored in glucose through glycolysis, the Krebs cycle, and the electron transport chain to produce ATP in aerobic organisms or byproducts like ethanol in anaerobic organisms. Both processes are essential for energy transfer within living systems.
Metabolism allows organisms to break down foods into energy through catabolic pathways. There are three main stages: digestion, degradation of molecules into two and three carbon compounds, and oxidation to provide ATP energy. The citric acid cycle and electron transport system further break down pyruvate from glycolysis to generate more ATP. Photosynthesis uses light energy to convert carbon dioxide and water into glucose and oxygen through light-dependent and light-independent reactions. The light reactions produce ATP and NADPH, while the Calvin cycle uses these products to fix carbon and produce glucose.
Bioenergetics is the study of energy in living systems and how organisms utilize energy. All organisms require energy, which can be in kinetic or potential forms. Bioenergetics examines how organisms harness energy through metabolic pathways and chemical reactions, breaking and forming chemical bonds to facilitate biological processes like growth. A key part of bioenergetics is how ATP serves as the "energy currency" of cells, being produced through cellular respiration and allowing energy transfer for various reactions. The laws of thermodynamics also govern energy transformations in biological systems.
When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best.
Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level.
Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Leonel Morgado
Current descriptions of immersive learning cases are often difficult or impossible to compare. This is due to a myriad of different options on what details to include, which aspects are relevant, and on the descriptive approaches employed. Also, these aspects often combine very specific details with more general guidelines or indicate intents and rationales without clarifying their implementation. In this paper we provide a method to describe immersive learning cases that is structured to enable comparisons, yet flexible enough to allow researchers and practitioners to decide which aspects to include. This method leverages a taxonomy that classifies educational aspects at three levels (uses, practices, and strategies) and then utilizes two frameworks, the Immersive Learning Brain and the Immersion Cube, to enable a structured description and interpretation of immersive learning cases. The method is then demonstrated on a published immersive learning case on training for wind turbine maintenance using virtual reality. Applying the method results in a structured artifact, the Immersive Learning Case Sheet, that tags the case with its proximal uses, practices, and strategies, and refines the free text case description to ensure that matching details are included. This contribution is thus a case description method in support of future comparative research of immersive learning cases. We then discuss how the resulting description and interpretation can be leveraged to change immersion learning cases, by enriching them (considering low-effort changes or additions) or innovating (exploring more challenging avenues of transformation). The method holds significant promise to support better-grounded research in immersive learning.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...Sérgio Sacani
Context. With a mass exceeding several 104 M⊙ and a rich and dense population of massive stars, supermassive young star clusters
represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions
among stars.
Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate
the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars.
The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun.
Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically,
the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec.
Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within
and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation
were carried out using the ACIS-Extract software.
Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a
photon flux threshold of approximately 2 × 10−8 photons cm−2
s
−1
. The X-ray sources exhibit a highly concentrated spatial distribution,
with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known
massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217.
Or: Beyond linear.
Abstract: Equivariant neural networks are neural networks that incorporate symmetries. The nonlinear activation functions in these networks result in interesting nonlinear equivariant maps between simple representations, and motivate the key player of this talk: piecewise linear representation theory.
Disclaimer: No one is perfect, so please mind that there might be mistakes and typos.
dtubbenhauer@gmail.com
Corrected slides: dtubbenhauer.com/talks.html
Immersive Learning That Works: Research Grounding and Paths ForwardLeonel Morgado
We will metaverse into the essence of immersive learning, into its three dimensions and conceptual models. This approach encompasses elements from teaching methodologies to social involvement, through organizational concerns and technologies. Challenging the perception of learning as knowledge transfer, we introduce a 'Uses, Practices & Strategies' model operationalized by the 'Immersive Learning Brain' and ‘Immersion Cube’ frameworks. This approach offers a comprehensive guide through the intricacies of immersive educational experiences and spotlighting research frontiers, along the immersion dimensions of system, narrative, and agency. Our discourse extends to stakeholders beyond the academic sphere, addressing the interests of technologists, instructional designers, and policymakers. We span various contexts, from formal education to organizational transformation to the new horizon of an AI-pervasive society. This keynote aims to unite the iLRN community in a collaborative journey towards a future where immersive learning research and practice coalesce, paving the way for innovative educational research and practice landscapes.
Authoring a personal GPT for your research and practice: How we created the Q...Leonel Morgado
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
2. MICROBES
Microbes are microorganisms which means
they cannot be seen with the naked eye and we
use microscope to see and observe them.
Examples:
Bacteria, archaea, and single cell, amoeba or a
paramecium. Sometimes we call viruses
microbes too.
3. Introduction of Microbial Metabolism
The term metabolism denotes all chemical reactions & physical
workings occurring in a cell.
Energy production from metabolism helps a bacterial cell to be
extensive and varied.
Energy which produces from metabolism system is required for
synthesis of enzymes, nucleic acids, polysaccharides and other
chemical components.
Energy is also required for repair damage of cell.
4. Metabolism
Metabolism is the chemical reaction and it is the use of body cell which breaks food into energy
and then this energy will be used by the body to move and grow and this chemical reaction is
controlled by specific proteins.
There are two types of metabolism:
Metabolism
Anabolism Catabolism
5. Types of Metabolism
Catabolism
A building and bond-making process that forms larger macromolecules from
smaller ones.
Requires the input of energy stored in the bonds of ATP.
Examples;
Catabolic processes are proteins becoming amino acids, glycogen breaking
down into glucose and triglycerides breaking up into fatty acids.
Anabolism
Breaks the bonds of larger molecules into smaller molecules.
Release energy.
Examples;
Include the formation of polypeptides from amino acids, glucose forming
glycogen and fatty acids forming triglycerides.
6. Types of Microbial Metabolism
All microbial metabolisms can be arranged according to:
Autotrophs:
An autotroph is an organism that can produce its own food using light, water, carbon dioxide, or
other chemicals.
Examples of autotrophs include plants, algae, plankton and bacteria.
Heterotrophs:
A heterotroph is an organism that eats other plants or animals for energy and nutrients.
Dogs, birds, fish, and humans are all examples of heterotrophs.
Phototrophs:
An organism, typically a plant, obtaining energy from sunlight as its source of energy to convert
inorganic materials into organic materials for use in cellular functions such as biosynthesis and
respiration.
These organisms are purple non-sulfur bacteria, green non-sulfur bacteria, and heliobacteria
7. Chemotrophs:
Chemotrophs obtain their energy from chemicals (organic and inorganic compounds).
They include organisms that use chemical reaction to obtain energy.
Lithotrophs:
Lithotrophs are a diverse group of organisms using an inorganic substrate to obtain
reducing equivalents for use in biosynthesis or energy conservation via aerobic or
anaerobic respiration.
Organotrophs:
An organotroph is an organism that obtains hydrogen or electrons from organic
substrates.
8. Enzymes
Enzymes are proteins that act as biological
catalysts.
Catalysts accelerate chemical reactions.
The molecules upon which enzymes may act
are called substrates.
Enzyme converts the substrates into different
molecules known as products
They have a globular shape.
A complex 3-D structure.
9. Transfer reaction of enzyme
Oxidation-reduction reactions:
Transfer of electrons.
Aminotransferases:
Convert one type of amino acid to another by
transferring an amino group.
Phosphotransferases:
Transfer phosphate groups, involved in energy
transfer.
Methyltransferases:
Move methyl groups from one molecule to another.
Decarboxylases:
Remove carbon dioxide from organic acids.
10. Fermentation
Fermentation is a specific type of heterotrophic metabolism that uses organic carbon instead of oxygen as
a terminal electron acceptor.
In the absence of aerobic or anerobic respiration, NADH is not oxidized by the ETC. This is because no
external electron acceptor is available. But to continue the metabolism, NAD must be regenerated. In such
situations, microorganisms do not convert pyruvate into Acetyl - CoA.
Instead, they use pyruvate or its derivatives as an electron acceptor for reoxidation of NADH.
It also leads to production of ATP.
The lactic fermentation is a typical example:
Bacteria produce energy by fermentation.
Streptococcus lactis.
11. Glycolytic pathway
The pathway is also known as Embden–Meyerhof–Parnas(EMP)
pathway.
It is the common pathway for glucose degradation to pyruvate
and is found in animals, plants and large number of microorganism.
This pathway is used by anaerobic as well as aerobic organisms.
The process takes place in the cytoplasm of prokaryotes and eukaryotes.
The pathway consists of ten enzyme- catalyzed reactions that
begin with a glucose molecule.
These reactions comprise three stages:
Conversion of glucose into fructose 1,6 - bisphosphate
Splitting of the fructose 1-6- bisphosphate into two three- carbon
fragments.
The formation of pyruvate along with ATP generation.
14. Krebs's cycle
The Kreb's cycle is named after its discoverer, British scientist
Hans Adolf Krebs (1900–1981).
Kreb's Cycle also called;
Citric acid cycle
Tricarboxylic acid cycle (TCA).
15. Kreb's cycle Process
The Krebs cycle takes place in the cytoplasm of bacteria and in the
mitochondrial matrix of eukaryotes:
Transfers the energy stored in acetyl CoA to NAD+ and FAD by
reducing them (transferring hydrogen ions to them).
NADH and FADH2 carry electrons to the electron transport chain.
Two ATPs are produced for each molecule of glucose through
phosphorylation.
Along the way, acetyl CoA, which joins with oxaloacetic acid, and
then participates in seven other additional transformations.
17. Nitrogen cycle
The nitrogen cycle is the process by which nitrogen is converted between its
various chemical forms. This transformation can be carried out through both
biological and physical processes.
Jules Reiset recognized in 1856
that decaying organic matter releases
nitrogen.
This discovery ultimately provided
the basis for the nitrogen cycle because
it was the first evidence of nitrogen
cycling in the biological sphere.
18. Nitrogen cycle
Nitrogen Cycle Nitrogen cycle consists of the following steps:
Nitrogen Fixation
Nitrogen assimilation
Ammonification
Nitrification
Denitrification.