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Objective 5: Cross-crop issues

   Activity 1: Drought phenotyping
       = Refining breeder tools

 Proposed Workplan for Phase II

ICRISAT – CIAT – ISRA – Univ North Carolina – NARS
                  of different crops
Background and rationale for that activity

No cross specie phenotyping in Phase I but comparative
genomics

Different crops work on similar traits with different methods

Incomplete / unrefined breeder tool box

No clear idea of trait value on yield

Capacity building (human) on drought phenotyping needed
What traits?

                          Reproduction /
                           partitioning

  Water use
/ productivity



                 Jw
  Water
  uptake
Proposed sub-Activities




                                Sub-Activity 5: Training
Water use / productivity

Water uptake

Reproduction and partitioning


Modeling
How to improve / enlarge / refine
               the breeder tool box?

                   “Breeder toolbox”
                         SPAD / SLA

                             CID

                          Staygreen

                            CTD
                         Grain number /
                           Grain size


Relation with yield
Relation with essential processes whose effects can be modeled
Prediction of trait / process value on yield
More / better tools
(Link with Trait phenotyping + phenot protocols
                Services of MBP)
           “Breeder toolbox”
                SPAD / SLA

                   CID

                 Staygreen

                   CTD
                Grain number /
                  Grain size
(Link with Trait phenotyping + phenot protocols Services of MBP)

“Water uptake”                                             “Water use /
                      “Breeder toolbox”                    Productivity”
                                                                High TE
                            SPAD / SLA
                                                         High mesophyll capacity
                                CID
                                                                Low Gs
                             Staygreen
                                                           Stomata sensitivity
                                CTD                            to VPD
                            Grain number /                Pre/post -anthesis
                              Grain size                      water use




             “Reproduction / Remobilization”
“Water uptake”                               “Water use /
                 “Breeder toolbox”           Productivity”
                                                High TE
                     SPAD / SLA
                                        High mesophyll capacity
                        CID
                                                Low Gs
                      Staygreen
                                         Stomata sensitivity
                        CTD                  to VPD
                     Grain number /      Pre/post -anthesis
                       Grain size            water use




           “Reproduction / Remobilization”
“Water uptake”                                      “Water use /
                        “Breeder toolbox”           Productivity”
                                                       High TE
                            SPAD / SLA
 “Right” kinetics of                           High mesophyll capacity
   water uptake                CID
                                                       Low Gs
                             Staygreen
   Higher water                                 Stomata sensitivity
      uptake                   CTD                  to VPD
                            Grain number /      Pre/post -anthesis
                              Grain size            water use




                  “Reproduction / Remobilization”
“Water uptake”                                       “Water use /
                         “Breeder toolbox”           Productivity”
                                                         High TE
                             SPAD / SLA
  “Right” kinetics of                              High mesophyll capacity
    water uptake                 CID
                                                         Low Gs
                              Staygreen
    Higher water                                    Stomata sensitivity
       uptake                   CTD                     to VPD
                             Grain number /         Pre/post -anthesis
                               Grain size               water use


Flower “tolerance”         Shorter/longer flower        PPI / PHI
  to water stress           to maturity interval        SBR / HI

                   “Reproduction / Remobilization”
“Water uptake”                                          “Water use /
                           “Breeder toolbox”            Productivity”

 “Right” kinetics of
   water uptake        ?
                                               ?            Low Gs
                              Staygreen
   Higher water                                    ?
                       ?                               Stomata sensitivity
      uptake                                               to VPD
                                               ?
                                                       Pre/post -anthesis
                                                           water use
Does my tool relate to yield?
How does the tool relate to a process?
“Water uptake”
                       “Breeder toolbox”


 “Right” kinetics of
   water uptake
                          Staygreen
Testing traits by
                       Crop simulation modeling

“Water uptake”
                         “Breeder toolbox”


 “Right” kinetics of
   water uptake
                            Staygreen
Probability of yield increase – Trait A




                                           75%




                                          Median




                                           25%
Probability of yield increase – Trait B



                                           75%




                                          Median




                                           25%
Testing traits by
Crop simulation modeling


  “Breeder toolbox”


       Trait A

       Trait B
Testing traits by
                        Crop simulation modeling

“Water uptake”                                        “Water use /
                          “Breeder toolbox”           Productivity”
                                                          High TE
                              SPAD / SLA
  “Right” kinetics of                               High mesophyll capacity
    water uptake                  CID
                                                          Low Gs
                               Staygreen
    Higher water                                     Stomata sensitivity
       uptake                    CTD                     to VPD
                              Grain number /         Pre/post -anthesis
                                Grain size               water use


Flower “tolerance”          Shorter/longer flower        PPI / PHI
  to water stress            to maturity interval        SBR / HI

                   “Reproduction / Remobilization”
Outputs to TLII




                                        Sub-Activity 5: Training
      Water use / productivity

      Water uptake

      Reproduction and partitioning


      Modeling
Trait value       Refined protocols   Better pheno-
predicted         More tools          typing data
Thank you

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41 Vincent Vadez Tli Obj5 Phase Ii

  • 1. Objective 5: Cross-crop issues Activity 1: Drought phenotyping = Refining breeder tools Proposed Workplan for Phase II ICRISAT – CIAT – ISRA – Univ North Carolina – NARS of different crops
  • 2. Background and rationale for that activity No cross specie phenotyping in Phase I but comparative genomics Different crops work on similar traits with different methods Incomplete / unrefined breeder tool box No clear idea of trait value on yield Capacity building (human) on drought phenotyping needed
  • 3. What traits? Reproduction / partitioning Water use / productivity Jw Water uptake
  • 4. Proposed sub-Activities Sub-Activity 5: Training Water use / productivity Water uptake Reproduction and partitioning Modeling
  • 5. How to improve / enlarge / refine the breeder tool box? “Breeder toolbox” SPAD / SLA CID Staygreen CTD Grain number / Grain size Relation with yield Relation with essential processes whose effects can be modeled Prediction of trait / process value on yield More / better tools
  • 6. (Link with Trait phenotyping + phenot protocols Services of MBP) “Breeder toolbox” SPAD / SLA CID Staygreen CTD Grain number / Grain size
  • 7. (Link with Trait phenotyping + phenot protocols Services of MBP) “Water uptake” “Water use / “Breeder toolbox” Productivity” High TE SPAD / SLA High mesophyll capacity CID Low Gs Staygreen Stomata sensitivity CTD to VPD Grain number / Pre/post -anthesis Grain size water use “Reproduction / Remobilization”
  • 8. “Water uptake” “Water use / “Breeder toolbox” Productivity” High TE SPAD / SLA High mesophyll capacity CID Low Gs Staygreen Stomata sensitivity CTD to VPD Grain number / Pre/post -anthesis Grain size water use “Reproduction / Remobilization”
  • 9. “Water uptake” “Water use / “Breeder toolbox” Productivity” High TE SPAD / SLA “Right” kinetics of High mesophyll capacity water uptake CID Low Gs Staygreen Higher water Stomata sensitivity uptake CTD to VPD Grain number / Pre/post -anthesis Grain size water use “Reproduction / Remobilization”
  • 10. “Water uptake” “Water use / “Breeder toolbox” Productivity” High TE SPAD / SLA “Right” kinetics of High mesophyll capacity water uptake CID Low Gs Staygreen Higher water Stomata sensitivity uptake CTD to VPD Grain number / Pre/post -anthesis Grain size water use Flower “tolerance” Shorter/longer flower PPI / PHI to water stress to maturity interval SBR / HI “Reproduction / Remobilization”
  • 11. “Water uptake” “Water use / “Breeder toolbox” Productivity” “Right” kinetics of water uptake ? ? Low Gs Staygreen Higher water ? ? Stomata sensitivity uptake to VPD ? Pre/post -anthesis water use
  • 12. Does my tool relate to yield?
  • 13. How does the tool relate to a process?
  • 14. “Water uptake” “Breeder toolbox” “Right” kinetics of water uptake Staygreen
  • 15. Testing traits by Crop simulation modeling “Water uptake” “Breeder toolbox” “Right” kinetics of water uptake Staygreen
  • 16. Probability of yield increase – Trait A 75% Median 25%
  • 17. Probability of yield increase – Trait B 75% Median 25%
  • 18. Testing traits by Crop simulation modeling “Breeder toolbox” Trait A Trait B
  • 19. Testing traits by Crop simulation modeling “Water uptake” “Water use / “Breeder toolbox” Productivity” High TE SPAD / SLA “Right” kinetics of High mesophyll capacity water uptake CID Low Gs Staygreen Higher water Stomata sensitivity uptake CTD to VPD Grain number / Pre/post -anthesis Grain size water use Flower “tolerance” Shorter/longer flower PPI / PHI to water stress to maturity interval SBR / HI “Reproduction / Remobilization”
  • 20. Outputs to TLII Sub-Activity 5: Training Water use / productivity Water uptake Reproduction and partitioning Modeling Trait value Refined protocols Better pheno- predicted More tools typing data