2. Informatics Modern sequencing
Molecular Developmental Biology
ゲノム資源解析ユニット
Genome Resource & Analysis Unit
Center for Developmental Biology
RIKEN, Kobe, Japan
Who am I ?
8. Collaborators
GRAS, RIKEN CDB CBRC, AIST
&
iFReC, Osaka Univ.
Christian M. Zmasek
Sanford-Burnham
Medical Research Institute
USA
Kazutaka Katoh 加藤 和貴Osamu Nishimura 西村 理
13. Downstream analysis on MAFFT server
様々な基準に従い、配列の体系的な取捨選択が可能
・配列長
・酷似する配列を削除 (CD-HIT)
・Gap-freeな座位数を制限している配列を削除(Max-Align)
・特定の生物種に絞る
・Guide-tree(案内木)上の位置
Managed by K. Katoh
14. Heuristic identification of homologs
(in publications, etc.)
Exhaustive collection of homologs Careful refinement of dataset
by deleting unnecessary sequences
Phylogenetic tree inference
Retrieval of limited number of
sequences
(on MAFFT server at CBRC, AIST)
(on aLeaves server at CDB, RIKEN)
Workflow using aLeaves-MAFFT