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Building Texas’ Life Science
         Infrastructure

     Charles E. Geyer, Jr., MD
       President and CMO

Innovations in Cancer Research and
      Prevention Conference
            CPRIT 2012
Creation of CTNeT

 CPRIT infrastructure grant established CTNeT to
  facilitate and coordinate the conduct of statewide
  clinical trials in cancer – Applied Science
 Main scientific tenets:
  • Conduct statewide, tissue-based and biomarker-driven
    clinical trials focused on advancing targeted, more
    personalized care for cancer
  • Collaborate closely with the CPRIT-funded Texas Cancer
    Research Biobank (TCRB)
  • Implement efficient and scalable cancer clinical trials
    model to rapidly develop, activate, conduct and analyze
    high quality clinical trials
Vision of CTNeT

 Improve access of Texans with cancers that are
  considered incurable to promising new cancer
  treatments by providing:
  • extensive genetic analyses of their tumors to
    identify targets of new drugs in development
  • statewide clinical trials of new drugs targeting
    genetic abnormalities identified as possible key
    drivers of their cancers
  • statewide clinical trials evaluating new drugs in
    rare malignancies including childhood cancers
Chronic Myeloid Leukemia
Chronic Myeloid Leukemia
Translocation – Dominant Driver Gene



                                 Legend

                              BCR-Abl
                              fusion gene - 99%
Breast Cancer
Breast Cancer
Amplification – Dominant Driver Gene



                                  Legend

                               HER2
                               Amplification - 15%
Lung Cancer
Lung Cancer
Array of Low Frequency Genetic Alterations


                                    Legend

                                  EGFR
                                  mutation - 14%

                                  KRAS
                                  mutation - 24%
                                  EML4-ALK
                                  translocation - 4%
                                  MET
                                  aberration - 15%
                                  KIF5B RET
                                  translocation - 2%
                                  BRAF
                                  mutation - 2%
Lung Cancer
Clinical Trial Targeting MET Aberrant Disease



                                     Legend
                                     MET
                                     aberrations
Lung Cancer
Clinical Trial Targeting MET Aberrant Disease



                                     Legend
                                     MET
                                     mutation or
                                     overexpression

                                     MET
                                     amplification
Lung Cancer
Clinical Trial Targeting MET Aberrant Disease




                             Legend
             MET mutation             MET
             or overexpression        amplification
Lung Cancer
Clinical Trial Targeting KRAS Mutant Disease



                                    Legend
                                    KRAS
                                    mutation
Lung Cancer
Clinical Trial Targeting KRAS Mutant Disease



                                    Legend

                                    KRAS mutation
                                    TS gene 1 wild
                                    TS gene 2 wild


                                    KRAS mutation
                                    TS gene 1 mutant
                                    TS gene 2 wild


                                    KRAS mutation
                                    TS gene 1 wild
                                    TS gene 2 mutant
Lung Cancer
Clinical Trial Targeting KRAS Mutant Disease




                            Legend
          KRAS mutation    KRAS mutation      KRAS mutation
          TS gene 1 wild   TS gene 1 mutant   TS gene 1 wild
          TS gene 2 wild   TS gene 2 wild     TS gene 2 mutant
Lung Cancer
Trial Targeting KIF5B RET Translocation



                                  Legend
                                  KIF5B RET
                                  translocation
KIF5B RET Inhibitor Clinical Trial
BRAF V600E Inhibitor Clinical Trial
Single Molecular Characterization Protocol
Molecular Characterization Infrastructure


                          Tissue             Results
Patient      Patient      submitted          reported              CTNeT
Consent    Registration                                           Members


                    Tissue stored for   All test results stored
                    future research     in data warehouse

                                                                   Communication with
                                                                   site for future
                                               CTNeT               potential studies
                                            Biorepository
                                             Operations
Members of CTNeT

                          BAYLOR COLLEGE of MEDICINE   UT HEALTH SCIENCE CENTER AT HOUSTON


          CANCER CARE CENTERS of SOUTH TEXAS               UT HEALTH SCIENCE CENTER at SAN ANTONIO


     CENTER for CANCER and BLOOD DISORDERS                      UT HEALTH SCIENCE CENTER AT TYLER


MARY CROWLEY CANCER RESEARCH CENTER                               UT MD ANDERSON CANCER CENTER


   MEMORIAL HERMANN CANCER CENTER                                    UT MEDICAL BRANCH at GALVESTON


     THE METHODIST HOSPITAL SYSTEM                                 UT SOUTHWESTERN MEDICAL CENTER


          ONCOLOGY CONSULTANTS, PA                                TEXAS CHILDREN’S CANCER CENTER


              SCOTT & WHITE HEALTHCARE                          TEXAS ONCOLOGY

                           SOUTH TEXAS ONCOLOGY HEMATOLOGY AT START CENTER

                       TEXAS TECH HEALTH SCIENCES CENTER / COVENANT HEALTH SYSTEM
Initial Portfolio of Studies

 Tissue Procurement and Molecular Testing:
  • Procurement and Molecular Characterization of Existing FFPE
    Tumor Samples to Identify Biomarker-Based Cohorts of
    Patients as Potential Candidates for Clinical Trials (N=2,500)
Initial Portfolio of Studies

 Clinical Studies:
  • Phase II study of MET inhibition in previously treated NSCLC,
    SCCHN and TNBC with MET aberrations (N=72)
    Study Co-chairs - George R. Blumenschein, Jr., MD and
    Ana M. Gonzalez-Angulo, MD, MSc (MDACC)
  • Phase II study of FAK inhibition in KRAS mutant NSCLC (N=114)
    Study Co-chairs - David E. Gerber, MD
    and Pier Paolo Scaglioni, MD (UTSW)
  • Phase II study of RET inhibition in KIF5B-RET-positive
    adenocarcinoma of the lung (N=20)
  • Phase II study of BRAF inhibition in BRAF V600E mutant
    adenocarcinoma of the lung (N=40)
Initial Portfolio of Studies

 Clinical Studies (continued):
  • Phase II study of dual MEK1 and FLT3 inhibition in
    relapsed/refractory AML with FLT3 and/or RAS mutation (N=60)
    Study Co-chairs - Gautam Borthakur, MD and
    Jorge E. Cortes, MD (MDACC)
  • Phase I/II study of combination of anti-CD22 antibody-
    chemotherapy conjugate with lower-intensity chemotherapy in
    elderly patients with ALL (N=66)
    Study Chair – Hagop M Kantarjian, MD (MDACC)
  • A Phase II, Multicenter, Single-Arm Study of G-202 as Second-
    Line Therapy Following Sorafenib for Adult Patients with
    Progressive Advanced Hepatocellular Carcinoma (N=29)
    Study Chair - Devalingam Mahalingam, MD, PhD
    (CTRC at UTHSC San Antonio)

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CTNeT - Dr. Geyer Presentation CPRIT 2012

  • 1. Building Texas’ Life Science Infrastructure Charles E. Geyer, Jr., MD President and CMO Innovations in Cancer Research and Prevention Conference CPRIT 2012
  • 2. Creation of CTNeT  CPRIT infrastructure grant established CTNeT to facilitate and coordinate the conduct of statewide clinical trials in cancer – Applied Science  Main scientific tenets: • Conduct statewide, tissue-based and biomarker-driven clinical trials focused on advancing targeted, more personalized care for cancer • Collaborate closely with the CPRIT-funded Texas Cancer Research Biobank (TCRB) • Implement efficient and scalable cancer clinical trials model to rapidly develop, activate, conduct and analyze high quality clinical trials
  • 3. Vision of CTNeT  Improve access of Texans with cancers that are considered incurable to promising new cancer treatments by providing: • extensive genetic analyses of their tumors to identify targets of new drugs in development • statewide clinical trials of new drugs targeting genetic abnormalities identified as possible key drivers of their cancers • statewide clinical trials evaluating new drugs in rare malignancies including childhood cancers
  • 5. Chronic Myeloid Leukemia Translocation – Dominant Driver Gene Legend BCR-Abl fusion gene - 99%
  • 7. Breast Cancer Amplification – Dominant Driver Gene Legend HER2 Amplification - 15%
  • 9. Lung Cancer Array of Low Frequency Genetic Alterations Legend EGFR mutation - 14% KRAS mutation - 24% EML4-ALK translocation - 4% MET aberration - 15% KIF5B RET translocation - 2% BRAF mutation - 2%
  • 10. Lung Cancer Clinical Trial Targeting MET Aberrant Disease Legend MET aberrations
  • 11. Lung Cancer Clinical Trial Targeting MET Aberrant Disease Legend MET mutation or overexpression MET amplification
  • 12. Lung Cancer Clinical Trial Targeting MET Aberrant Disease Legend MET mutation MET or overexpression amplification
  • 13. Lung Cancer Clinical Trial Targeting KRAS Mutant Disease Legend KRAS mutation
  • 14. Lung Cancer Clinical Trial Targeting KRAS Mutant Disease Legend KRAS mutation TS gene 1 wild TS gene 2 wild KRAS mutation TS gene 1 mutant TS gene 2 wild KRAS mutation TS gene 1 wild TS gene 2 mutant
  • 15. Lung Cancer Clinical Trial Targeting KRAS Mutant Disease Legend KRAS mutation KRAS mutation KRAS mutation TS gene 1 wild TS gene 1 mutant TS gene 1 wild TS gene 2 wild TS gene 2 wild TS gene 2 mutant
  • 16. Lung Cancer Trial Targeting KIF5B RET Translocation Legend KIF5B RET translocation
  • 17. KIF5B RET Inhibitor Clinical Trial
  • 18. BRAF V600E Inhibitor Clinical Trial
  • 20. Molecular Characterization Infrastructure Tissue Results Patient Patient submitted reported CTNeT Consent Registration Members Tissue stored for All test results stored future research in data warehouse Communication with site for future CTNeT potential studies Biorepository Operations
  • 21. Members of CTNeT BAYLOR COLLEGE of MEDICINE UT HEALTH SCIENCE CENTER AT HOUSTON CANCER CARE CENTERS of SOUTH TEXAS UT HEALTH SCIENCE CENTER at SAN ANTONIO CENTER for CANCER and BLOOD DISORDERS UT HEALTH SCIENCE CENTER AT TYLER MARY CROWLEY CANCER RESEARCH CENTER UT MD ANDERSON CANCER CENTER MEMORIAL HERMANN CANCER CENTER UT MEDICAL BRANCH at GALVESTON THE METHODIST HOSPITAL SYSTEM UT SOUTHWESTERN MEDICAL CENTER ONCOLOGY CONSULTANTS, PA TEXAS CHILDREN’S CANCER CENTER SCOTT & WHITE HEALTHCARE TEXAS ONCOLOGY SOUTH TEXAS ONCOLOGY HEMATOLOGY AT START CENTER TEXAS TECH HEALTH SCIENCES CENTER / COVENANT HEALTH SYSTEM
  • 22. Initial Portfolio of Studies  Tissue Procurement and Molecular Testing: • Procurement and Molecular Characterization of Existing FFPE Tumor Samples to Identify Biomarker-Based Cohorts of Patients as Potential Candidates for Clinical Trials (N=2,500)
  • 23. Initial Portfolio of Studies  Clinical Studies: • Phase II study of MET inhibition in previously treated NSCLC, SCCHN and TNBC with MET aberrations (N=72) Study Co-chairs - George R. Blumenschein, Jr., MD and Ana M. Gonzalez-Angulo, MD, MSc (MDACC) • Phase II study of FAK inhibition in KRAS mutant NSCLC (N=114) Study Co-chairs - David E. Gerber, MD and Pier Paolo Scaglioni, MD (UTSW) • Phase II study of RET inhibition in KIF5B-RET-positive adenocarcinoma of the lung (N=20) • Phase II study of BRAF inhibition in BRAF V600E mutant adenocarcinoma of the lung (N=40)
  • 24. Initial Portfolio of Studies  Clinical Studies (continued): • Phase II study of dual MEK1 and FLT3 inhibition in relapsed/refractory AML with FLT3 and/or RAS mutation (N=60) Study Co-chairs - Gautam Borthakur, MD and Jorge E. Cortes, MD (MDACC) • Phase I/II study of combination of anti-CD22 antibody- chemotherapy conjugate with lower-intensity chemotherapy in elderly patients with ALL (N=66) Study Chair – Hagop M Kantarjian, MD (MDACC) • A Phase II, Multicenter, Single-Arm Study of G-202 as Second- Line Therapy Following Sorafenib for Adult Patients with Progressive Advanced Hepatocellular Carcinoma (N=29) Study Chair - Devalingam Mahalingam, MD, PhD (CTRC at UTHSC San Antonio)