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[citations needed]
for the sum of all human knowledge
Dario Taraborelli
@readermeter
COASP 2016 • September 21, 2016
1. a major entry point into the scholarly literature
top sources of DOI lookups
http://crosstech.crossref.org/2014/02/many-metrics-such-data-wow.html
http://blog.crossref.org/2016/05/https-and-wikipedia.html
wikipedia.org
world’s most accessed online medical resource
Heilman and West (2015) doi.org/10.2196/jmir.4069
most visited resource on Ebola in West Africa
Heilman (2016) http://tinyurl.com/jfuyduv
Most used internet site in Liberia,
Sierra Leone and Guinea for
Ebola during 2014 outbreak
Greater than CNN, CDC and WHO
2. central hub in the linked open data ecosystem
Schmachtenberg et al (2014)
http://lod-cloud.net [CC BY SA]
Challenges 🤔🤔
Machine-readable knowledge base
Editable by anyone
Supporting human + algorithmic curation
Comprehensive coverage
Transparently verifiable
Free knowledge base that anyone can edit
Launched in 2012
Integrated with Wikipedia and other sister
projects
Statistics (September 2016)
Over 20M items
Over 100M statements
Fastest growing active editor population
among largest Wikimedia projects
Wikidata’s anatomy
https://www.wikidata.org/wiki/Wikidata:Introduction
Wikidata’s anatomy
Linked data, San Francisco, Jeblad
https://commons.wikimedia.org/wiki/File:Linked_Data_-_San_Francisco.svg [CC BY SA]
SPARQL:
https://t.co/cDR4Lt7V6P
Birth place of people
employed by MIT
Wikidata queries
SPARQL:
http://tinyurl.com/h2lqv9y
Authors with a known
location and ORCID
Wikidata queries
Expert curation of scientific open data
Benjamin Good (2016) Opportunities and challenges
presented by Wikidata in the context of biocuration
http://tinyurl.com/hk9qrmz
Expert curation of scientific open data
Gene Wiki: WIkidata SPARQL examples
https://bitbucket.org/sulab/wikidatasparqlexamples/overview
Get all known drug-drug interactions for Methadone via its CHEMBL id
Get a list of all diseases known to be treated by Metformin
Get a list of all diseases that might be treated by Metformin
https://twitter.com/egonwillighagen/status/718474906858582016
Benjamin Good (2016) Opportunities and challenges presented by Wikidata in the context of biocuration
http://tinyurl.com/hk9qrmz
WikiCite: goals
Build a repository of all Wikimedia citations
and bibliographic metadata
Design data models and technology to improve the coverage,
quality, standards-compliance and machine-readability of
citations and bibliographic metadata in Wikimedia projects
@wikicite • meta.wikimedia.org/wiki/WikiCite
https://tools.wmflabs.org/sqid/#/view?id=P2860
All biomedical OA review articles of the last 5 years
The Zika corpus
Open citation graph layer
Bibliographic metadata layer
Expert annotation layer
Encyclopedic layer
The Zika corpus
Encyclopedic layer
The Zika corpus
Expert annotation layer
Encyclopedic layer
The Zika corpus
Bibliographic metadata layer
Expert annotation layer
Encyclopedic layer
The Zika corpus
Open citation graph layer
Bibliographic metadata layer
Expert annotation layer
Encyclopedic layer
Most cited authors in the Zika research corpus (filtered by journal, OA status or type of statement)
SPARQL: http://tinyurl.com/jb8da68
Semi-automated recommendation of entities, missing statements, references for unsourced statements
https://www.wikidata.org/wiki/Wikidata:Primary_sources_tool
https://meta.wikimedia.org/wiki/Grants:IEG/StrepHit:_Wikidata_Statements_Validation_via_References
https://meta.wikimedia.org/wiki/Grants:Project/WikiFactMine
all statements citing a New York Times article
most popular journals cited by statements of any item that is a subclass of economics
all statements citing the works of Joseph Stiglitz
all statements citing journal articles by physicists at Oxford University in the 1970s
all statements citing a journal article that was retracted
all statements citing a source that cites a journal article that was retracted
https://meta.wikimedia.org/wiki/WikiCite_2016/Report/Group_5
Asks 🙏🙏
1. release open citation data
Distributing references via Crossref: blog.crossref.org/2016/06/distributing-references-via-crossref.html
2. use licenses supporting content mining
1. release open citation data
The Right to Read Is the Right to Mine: blog.okfn.org/2012/06/01/the-right-to-read-is-the-right-to-mine
Crossref Text and Data Mining Services: tdmsupport.crossref.org/
Accelerate the discoverability, reusability,
and societal impact of open access
Thank you
Acknowledgments
Daniel Mietchen, Jonathan Dugan, Lydia Pintscher, Cameron Neylon, James Hare, James Heilman,
Magnus Manske, Egon Willighagen, the Gene Wiki team (especially Andra Waagmeester, Tim
Putman, Benjamin Good), the ContentMine team, the University of Chicago Knowledge Lab, all
WikiCite 2016 participants and Wikidata Source Metadata project contributors.
Additional image credits
Library, National Park Service Collection thenounproject.com/term/library/191/ [CC0]
Robot, Creative Stall thenounproject.com/term/robot/132360/ [CC BY]
Open Access logo commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_transparent.svg [CC0]
dario@wikimedia.org • @readermeter • @Wikidata • @WikiCite • @WikiResearch

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Citations needed for the sum of all human knowledge: Wikidata as the missing link between scholarly publishing and linked open data

  • 1. [citations needed] for the sum of all human knowledge Dario Taraborelli @readermeter COASP 2016 • September 21, 2016
  • 2.
  • 3. 1. a major entry point into the scholarly literature
  • 4. top sources of DOI lookups http://crosstech.crossref.org/2014/02/many-metrics-such-data-wow.html http://blog.crossref.org/2016/05/https-and-wikipedia.html wikipedia.org
  • 5. world’s most accessed online medical resource Heilman and West (2015) doi.org/10.2196/jmir.4069
  • 6. most visited resource on Ebola in West Africa Heilman (2016) http://tinyurl.com/jfuyduv Most used internet site in Liberia, Sierra Leone and Guinea for Ebola during 2014 outbreak Greater than CNN, CDC and WHO
  • 7. 2. central hub in the linked open data ecosystem
  • 8. Schmachtenberg et al (2014) http://lod-cloud.net [CC BY SA]
  • 10. Machine-readable knowledge base Editable by anyone Supporting human + algorithmic curation Comprehensive coverage Transparently verifiable
  • 11.
  • 12. Free knowledge base that anyone can edit Launched in 2012 Integrated with Wikipedia and other sister projects Statistics (September 2016) Over 20M items Over 100M statements Fastest growing active editor population among largest Wikimedia projects
  • 14. Wikidata’s anatomy Linked data, San Francisco, Jeblad https://commons.wikimedia.org/wiki/File:Linked_Data_-_San_Francisco.svg [CC BY SA]
  • 15. SPARQL: https://t.co/cDR4Lt7V6P Birth place of people employed by MIT Wikidata queries
  • 16. SPARQL: http://tinyurl.com/h2lqv9y Authors with a known location and ORCID Wikidata queries
  • 17. Expert curation of scientific open data Benjamin Good (2016) Opportunities and challenges presented by Wikidata in the context of biocuration http://tinyurl.com/hk9qrmz
  • 18. Expert curation of scientific open data Gene Wiki: WIkidata SPARQL examples https://bitbucket.org/sulab/wikidatasparqlexamples/overview Get all known drug-drug interactions for Methadone via its CHEMBL id Get a list of all diseases known to be treated by Metformin Get a list of all diseases that might be treated by Metformin
  • 20. Benjamin Good (2016) Opportunities and challenges presented by Wikidata in the context of biocuration http://tinyurl.com/hk9qrmz
  • 21.
  • 22. WikiCite: goals Build a repository of all Wikimedia citations and bibliographic metadata Design data models and technology to improve the coverage, quality, standards-compliance and machine-readability of citations and bibliographic metadata in Wikimedia projects @wikicite • meta.wikimedia.org/wiki/WikiCite
  • 24. The Zika corpus Open citation graph layer Bibliographic metadata layer Expert annotation layer Encyclopedic layer
  • 26. The Zika corpus Expert annotation layer Encyclopedic layer
  • 27. The Zika corpus Bibliographic metadata layer Expert annotation layer Encyclopedic layer
  • 28. The Zika corpus Open citation graph layer Bibliographic metadata layer Expert annotation layer Encyclopedic layer
  • 29. Most cited authors in the Zika research corpus (filtered by journal, OA status or type of statement) SPARQL: http://tinyurl.com/jb8da68
  • 30. Semi-automated recommendation of entities, missing statements, references for unsourced statements https://www.wikidata.org/wiki/Wikidata:Primary_sources_tool https://meta.wikimedia.org/wiki/Grants:IEG/StrepHit:_Wikidata_Statements_Validation_via_References https://meta.wikimedia.org/wiki/Grants:Project/WikiFactMine
  • 31. all statements citing a New York Times article most popular journals cited by statements of any item that is a subclass of economics all statements citing the works of Joseph Stiglitz all statements citing journal articles by physicists at Oxford University in the 1970s all statements citing a journal article that was retracted all statements citing a source that cites a journal article that was retracted https://meta.wikimedia.org/wiki/WikiCite_2016/Report/Group_5
  • 33. 1. release open citation data Distributing references via Crossref: blog.crossref.org/2016/06/distributing-references-via-crossref.html
  • 34. 2. use licenses supporting content mining 1. release open citation data The Right to Read Is the Right to Mine: blog.okfn.org/2012/06/01/the-right-to-read-is-the-right-to-mine Crossref Text and Data Mining Services: tdmsupport.crossref.org/
  • 35. Accelerate the discoverability, reusability, and societal impact of open access
  • 36. Thank you Acknowledgments Daniel Mietchen, Jonathan Dugan, Lydia Pintscher, Cameron Neylon, James Hare, James Heilman, Magnus Manske, Egon Willighagen, the Gene Wiki team (especially Andra Waagmeester, Tim Putman, Benjamin Good), the ContentMine team, the University of Chicago Knowledge Lab, all WikiCite 2016 participants and Wikidata Source Metadata project contributors. Additional image credits Library, National Park Service Collection thenounproject.com/term/library/191/ [CC0] Robot, Creative Stall thenounproject.com/term/robot/132360/ [CC BY] Open Access logo commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_transparent.svg [CC0] dario@wikimedia.org • @readermeter • @Wikidata • @WikiCite • @WikiResearch