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Claire Jagodzinski
                            1
January 2012   Pauline Flipo
Alzheimer’s Disease
                                                              2010
         Multifactorial dementia                           More than
                                                           35 millions
        Memory loss (first short term)                       people

                            Apathy

                          Confusion                      Risk factors
                  Language problems
                                                       Cardiovascular risk
         Dependance upon caregivers
                                                             Ageing

                                                        Genetic factors

                                                       Under-stimulated
                                                         environment

Reitz, C. et al. Nat. Rev. Neurol. 7, 137–152 (2011)                         2
Mechanisms
              Misfolded proteins


                Oxidative and
           inflammatory damage


             Energy failure and
            synaptic dysfunction


                      Dementia

                                                                                                                 3
Henry W. Querfuth, Frank M. LaFerla. Alzheimer’s Disease. New England Journal of Medicine, 2010;362(4):329-344
Misfolded proteins :
                          Focus on Aβ aggregates
                                                       APP = Amyloid Precursor Protein

                                                                               Aβ40

                                                                         Aβ42 is toxic and
                                                                          associated with
                                                                         Alzheimer disease



                                                              β secretase
                                                               (BACE-1)


                                     γ secretase


   Secretases lead to a pathological
          processing of APP
Reitz, C. et al. Nat. Rev. Neurol. 7, 137–152 (2011)                                         4
Correlation


Neurotoxicity                     Aβ Oligomers and fibrils



                Transient and hazardous
                                                             5
The Aβ pathway : trials
           Vaccination (AN-1792 = AIP-001)

                 Phase IIa, NCT00021723                                        Ongoing
                Diminution of plaques
                     Encephalitis
            No cognitive or survival benefit                                   2 monoclonal antibodies
                                                                                 against Aβ, Phase III :
                                                                             Bapineuzumab, Solanezumab
       Passive immunization (bapineuzumab)

                  Phase II, NCT00112073                                       Human Immune Globulin IV,
                                                                                      Phase III
               Vasogenic cerebral oedema



            γ-secretase inhibitor (LY450139)

                                                                                                                 6
Henry W. Querfuth, Frank M. LaFerla. Alzheimer’s Disease. New England Journal of Medicine, 2010;362(4):329-344
7
http://www.fiercebiotech.com/press-releases/researchers-design-alzheimers-antibodies
Structure of Antibody
                                    CDR: Complementary Determining Region




Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid β.   8
PNAS Early Edition, October 2011
Motif-grafting strategy
                           N-ter
                                          C-ter
                                                                                Gammabodies:
                                                                       Grafted-Amyloid Motif Antibodies

                                                                                 C ter Aβ motif
                                                                     => reactive with Aβ soluble oligomers

                                                                                   Central Aβ motif
                                                                              => reactive with Aβ fibrils


                                                                          The grafted motifs target the
                                                                         corresponding peptide segment
                                                                         within misfolded Aβ conformers




Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid β.   9
PNAS Early Edition, October 2011
Gammabodies: Motif-grafting strategy
             Sequence-specific antibodies:
            Detection of each Aβ conformer
          6E10: N-ter (Aβ 1-16)
          4G8: middle region (Aβ 18-22)
          9F1: C-ter (Aβ 34-39)


           Conformation-specific antibodies:
              Specifically recognize folded
             conformers of amyloidogenic
                         proteins
          OC, WO1: fibrils
          A11: oligomers




Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid β.   10
PNAS Early Edition, October 2011
Which interactions?
                                Hypothesis : Homotypic interaction


                     Aβ motifs                                                    Same Aβ motifs
                     Antibody                                                       Conformers



                                      Competitive binding analysis

                                                     Gammabodies

                                                                VS

                    Sequence-specific monoclonal antibodies against Aβ
Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   11
β. PNAS Early Edition, October 2011
Competitive binding analysis




Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   12
β. PNAS Early Edition, October 2011
Neutralisation of oligomers and fibrils’
                   toxicity
                        Cell culture                                                  Reduction of MTT
                                                                                        Cell survival



                                                                                        Aβ gammabodies
                                                                                          are nontoxic


                                                                                                      Sequences of
                                                                                                       grafted Aβ
                                                                                                        peptide



Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   13
β. PNAS Early Edition, October 2011
Neutralisation of oligomers and fibrils’
                   toxicity
                        Cell culture



                                                                                          Aβ gammabodies
                                                                                          12-21, 15-24, 18-
                                                                                          27, 30-39 and 33-
                                                                                            42 inhibit the
                                                                                           toxicity of fibrils




Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   14
β. PNAS Early Edition, October 2011
Neutralisation of oligomers and fibrils’
                   toxicity
                                                                                          Aβ oligomers are
                        Cell culture                                                     more toxic than Aβ
                                                                                                fibrils


                                                                                           Aβ gammabodies
                                                                                           30-39 and 33-42
                                                                                          inhibit the toxicity
                                                                                              of soluble
                                                                                              oligomers




Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   15
β. PNAS Early Edition, October 2011
In brief...
                 Gammabodies

          Recognize aggregated Aβ isoforms in a conformation-
          specific manner

          Via homotypic interactions between amyloidogenic
          peptide motifs

          Are sequence-specific

          Neutralize the toxicity of Aβ oligomers and fibrils


Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   16
β. PNAS Early Edition, October 2011
Conclusion

                                        Simple design strategy



                                  Hope for Alzheimer Disease



                     Strategy potentially applicable to other
                                    diseases

Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid   17
β. PNAS Early Edition, October 2011

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Alzheimer Antibody

  • 1. Claire Jagodzinski 1 January 2012 Pauline Flipo
  • 2. Alzheimer’s Disease 2010 Multifactorial dementia More than 35 millions Memory loss (first short term) people Apathy Confusion Risk factors Language problems Cardiovascular risk Dependance upon caregivers Ageing Genetic factors Under-stimulated environment Reitz, C. et al. Nat. Rev. Neurol. 7, 137–152 (2011) 2
  • 3. Mechanisms Misfolded proteins Oxidative and inflammatory damage Energy failure and synaptic dysfunction Dementia 3 Henry W. Querfuth, Frank M. LaFerla. Alzheimer’s Disease. New England Journal of Medicine, 2010;362(4):329-344
  • 4. Misfolded proteins : Focus on Aβ aggregates APP = Amyloid Precursor Protein Aβ40 Aβ42 is toxic and associated with Alzheimer disease β secretase (BACE-1) γ secretase Secretases lead to a pathological processing of APP Reitz, C. et al. Nat. Rev. Neurol. 7, 137–152 (2011) 4
  • 5. Correlation Neurotoxicity Aβ Oligomers and fibrils Transient and hazardous 5
  • 6. The Aβ pathway : trials Vaccination (AN-1792 = AIP-001) Phase IIa, NCT00021723 Ongoing Diminution of plaques Encephalitis No cognitive or survival benefit 2 monoclonal antibodies against Aβ, Phase III : Bapineuzumab, Solanezumab Passive immunization (bapineuzumab) Phase II, NCT00112073 Human Immune Globulin IV, Phase III Vasogenic cerebral oedema γ-secretase inhibitor (LY450139) 6 Henry W. Querfuth, Frank M. LaFerla. Alzheimer’s Disease. New England Journal of Medicine, 2010;362(4):329-344
  • 8. Structure of Antibody CDR: Complementary Determining Region Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid β. 8 PNAS Early Edition, October 2011
  • 9. Motif-grafting strategy N-ter C-ter Gammabodies: Grafted-Amyloid Motif Antibodies C ter Aβ motif => reactive with Aβ soluble oligomers Central Aβ motif => reactive with Aβ fibrils The grafted motifs target the corresponding peptide segment within misfolded Aβ conformers Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid β. 9 PNAS Early Edition, October 2011
  • 10. Gammabodies: Motif-grafting strategy Sequence-specific antibodies: Detection of each Aβ conformer 6E10: N-ter (Aβ 1-16) 4G8: middle region (Aβ 18-22) 9F1: C-ter (Aβ 34-39) Conformation-specific antibodies: Specifically recognize folded conformers of amyloidogenic proteins OC, WO1: fibrils A11: oligomers Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid β. 10 PNAS Early Edition, October 2011
  • 11. Which interactions? Hypothesis : Homotypic interaction Aβ motifs Same Aβ motifs Antibody Conformers Competitive binding analysis Gammabodies VS Sequence-specific monoclonal antibodies against Aβ Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 11 β. PNAS Early Edition, October 2011
  • 12. Competitive binding analysis Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 12 β. PNAS Early Edition, October 2011
  • 13. Neutralisation of oligomers and fibrils’ toxicity Cell culture Reduction of MTT  Cell survival Aβ gammabodies are nontoxic Sequences of grafted Aβ peptide Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 13 β. PNAS Early Edition, October 2011
  • 14. Neutralisation of oligomers and fibrils’ toxicity Cell culture Aβ gammabodies 12-21, 15-24, 18- 27, 30-39 and 33- 42 inhibit the toxicity of fibrils Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 14 β. PNAS Early Edition, October 2011
  • 15. Neutralisation of oligomers and fibrils’ toxicity Aβ oligomers are Cell culture more toxic than Aβ fibrils Aβ gammabodies 30-39 and 33-42 inhibit the toxicity of soluble oligomers Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 15 β. PNAS Early Edition, October 2011
  • 16. In brief... Gammabodies Recognize aggregated Aβ isoforms in a conformation- specific manner Via homotypic interactions between amyloidogenic peptide motifs Are sequence-specific Neutralize the toxicity of Aβ oligomers and fibrils Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 16 β. PNAS Early Edition, October 2011
  • 17. Conclusion Simple design strategy Hope for Alzheimer Disease Strategy potentially applicable to other diseases Joseph M. Perchiacca et al. Structure-based design of conformation- and sequence-specific antibodies against amyloid 17 β. PNAS Early Edition, October 2011