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International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056
Volume: 05 Issue: 03 | Mar-2018 www.irjet.net p-ISSN: 2395-0072
© 2018, IRJET | Impact Factor value: 6.171 | ISO 9001:2008 Certified Journal | Page 448
“Analyse Big Data Electronic Health Records Database using Hadoop
Cluster”
Mr. C.S. Arage1, Mr. M.P. Gaikwad2, Mr. Rohit Tadasare3, Mr. Ronak Bhutra4
1,2,3,4 Sou. Sushila Danchand Ghodawat Charitable Trust’s Sanjay Ghodawat Group of Institutions.
Computer Science and Engineering, Shivaji University Kolhapur, Maharashtra, India
---------------------------------------------------------------------***---------------------------------------------------------------------
ABSTRACT - Big data and the related technologies have
improved health care enormously, from understanding the
origins of diseases, better diagnoses, helping patients to
monitor their own conditions. By digitizing, combining
effectively using big data, healthcare organizations can
improve their quality of service by analyzing the effectiveness
of a treatment and the efficiency of the healthcare delivery
process and drug abuse more quickly and efficiently. General
goals to use analytics are, we can predict readmission risks,
increase the efficiency of clinical care, and finding
opportunities for cost savings. This paper gives various
solutions for how and where big data can be applied in the
health care system.
Apache Hadoop is open source software used to process huge
data sets in the distributed computing environment using
clusters and commodity hardware. MapReduce is a
programming model for processing such huge data sets.
Further, we propose a MapReduce Program to efficiently
Analyse Electronic Health Records (EHR) database.
Keywords: Big Data, HealthCare Solutions, Hadoop Use
Cases, Clinical Decision Support.
I.INTRODUCTION
Big data is a collection of techniques and technologies,which
needs new forms of integration to uncover large hidden
values from large datasets that are diverse, complex,andofa
massive scale. Big data can also be defined aslargevolumeof
unstructured data, which cannot be handled by traditional
data management tools like relationaldatabasemanagement
system. The increasing digitizationofhealthcareinformation
is opening new possibilities for providers and payers to
enhance the excellence of care, improve healthcare
outcomes, and reduce costs. Due to advance technologies,
the paper works are converted into digital format (digital
health records or Electronic Health Records (EHR). Since
information is in digital form, healthcare providers can use
some available tools and technologies to analyse that
information and generate valuable insights. As health care
data isgenerated in variety of devices, with highvelocityand
huge volume the big data solutions are required to solve the
problems of storage and processing. Therearemanybigdata
technologies available to solve these issues. But as health
care data need to be handled in a different way we many
need to customize according to the specific purpose.Bigdata
analysis in health care data can reducethecostsandimprove
the quality of health care by providing a personalized health
care. Big Data in healthcare industry promises to support a
diverse range of healthcare data managementfunctionssuch
as population health management, clinical decision support
and disease surveillance. The Healthcare industry is still in
the early stages of getting its feet wet in the large-scale
integration and analysis of big data.
With 80% of the healthcare data being unstructured, it is a
challenge for the healthcare industry to make sense of all
this data and leverage it effectively for Clinical operations,
Medical research, and Treatment courses.
II. LITERATURE REVIEW
The increasing digitization of healthcare information is
opening new possibilities for providers and payers to
improve the quality of care, health careresults,andminimize
the costs. The latest tools and technologies are used on
digital information of health care organizationscangenerate
valuable insights. Organizations must also analyse internal
and external patient information to more accurately
measure risk and outcomes. At the same time, many
providers and payers are working to increase data
transparency to produce new insight knowledge. Existing
analytical techniques can be applied to the vast amount of
existing (but currently unanalysed) patient related health
and medical data to reach a deeper understanding ofresults,
which can be applied at the point of care. Ideally, these data
would inform each physician and their patients during the
decision-making process and used to identify the
appropriate treatment option for that particular patient.
A. Tools and Application in Health Care System
The health care system has a large volume of unstructured
data, so it is impossible to do research and diagnoses
without an appropriate tool or technique. Hadoop is a tool
that is designed to process huge volumes of data, which is
integrated with map-reduce concept. Map reduce can divide
the data set into multiple chunks, each will be processed in
parallel among multiple nodes. MapR can overcome the
limitation of Hadoop, as it has dynamic read-writedatalayer
that provides unparalleled dependability.
B. Application of Big Data in Health Care:
1. Personalized Treatment Planning:Basedonthemedical
histories of every individual patient, diagnoses can be done,
which can be used to decide the appropriate treatment and
medicine for that patient. Real time analysis will be done
using MapR and Hadoop, based on the analytics results, the
patient can have personalized care for them.
International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056
Volume: 05 Issue: 03 | Mar-2018 www.irjet.net p-ISSN: 2395-0072
© 2018, IRJET | Impact Factor value: 6.171 | ISO 9001:2008 Certified Journal | Page 449
2. Assisted Diagnosis: Physicians can isolate and treatthe
patient based on some factors like symptoms, medical
history, and side effects. Using prediction modeling and
Hadoop can provide information which will be helpfultothe
doctors.
3. Utilization Review: To assist evidence-based treatment,
which isconsidered to be the best form of treatment, the big
data analytics of health information are required. The
analysis can be further improved by getting information
from non-traditional sources like social and other electronic
media for more insightful information using big data
analytics tools and techniques like Hadoop and MapReduce.
C. K-Means Clustering:
K-means is one of the simplest unsupervised learning
algorithm that solve the well-known clusteringproblem.The
procedure follows a simple and easy way to classify a given
data set through a certain number of clusters (assume k
clusters) fixed apriori. The main idea is to define k centres,
one for each cluster. These centers should be place in a
cunning way because of different location causes different
result. So, the better choice is to place them as much as
possible far away from each other. The next step is to take
each point belonging to a given data set and associate it to
the nearest center. When no point is pending, the first stepis
completed and an early group age is done. At this point, we
need to re-calculate k new centroids as barycentre of the
clusters resulting from the previous step. After we have
these k new centroids, a new binding hastobedonebetween
the same data set points and the nearest new center. A loop
has been generated. As a result of this loop we may notice
that the k centre’s change their location step by step until no
more changes are done or in other words centres do not
move any more. Finally, this algorithm focus minimizing a
objective function know as squared error function given by:
Where,
‘||xi - vj||’ is the Euclidean distance
between xi and vj.
‘ci’ is the number of data points
in ith cluster.
‘c’ is the number of cluster
centers.
Algorithmic steps for k-means clustering
Let X = {x1,x2,x3,……..,xn} be the set of data
points and V = {v1,v2,…….,vc} be the set of centers.
1) Randomly select ‘c’ cluster centers.
2) Calculate the distance between each data point and
cluster centers.
3) Assign the data point to the clustercenterwhosedistance
from the cluster center is minimum of all the cluster centers.
4) Recalculate the new cluster center using:
5) Recalculate the distance between each data point and
new obtained cluster centers.
6) If no data point was reassigned then stop, otherwise
repeat from step 3).
III.CONCLUSION
Today healthcare providers, payers, physicians generate
huge data which requires analysis to provide better health
care to patients. Patients can have personalized health care
and in order to reduce the cost analytics play a major role.In
this paper we have seen the importance of Big Dataanalytics
in health care. MapReduce model is an efficient
programming paradigm for processing such huge data. .
Efficient in MapReduce model can beincreasedbyimproving
the efficiency of algorithm. In this paper, we propose an
algorithm where the EHR database canbehandledefficiently
with minimum time taken for reading the database.Thetime
taken to reduce the records and write the results back to the
file is also minimized. The MapReduce algorithm run on
Hadoop clusters.
IV. REFERENCES
1. Wimalasiri, J. S., Ray, P. and Wilson, C. S.,
"Maintaining Security in an Ontology Driven Multi-
Agent System for Electronic Health Records",
Proceedings of the IEEE Healthcom 2004, Odawara,
Vol 3, June 2004. Page no:47-52
2. Sreekanth et al. “MapReduce Program to Efficiently
Analyse Big Data Electronic Health Records
Database using Hadoop Cluster on Amazon Elastic
Compute Cloud ”, International Journal ofAdvanced
Research in Computer Science and Software
Engineering. Volume 5, Issue 8, August 2015.Page
no: 774-777.
3. HAN HU, YONGGANG WEN, TAT-SENG CHUA, AND
XUELONG LI, Toward Scalable Systems for Big Data
Analytics, Vol: 2, April2014. Page No: 652-658
4. Sreekanth Rallapalli “Improving Health care - Big
Data Analytics for Electronic Health Records on
Cloud” IEEE Jounal of Advances in Information
Technology Vol. 7,No. 1, February 2016.Pageno:65-
68
5. Haritha Chennamsetty”Predictive Analytics on
Electronic Health Records(EHRs)usingHadoopand
Hive”. IEEE Journals of Advances in Computer
Engineering. Vol 9, Sept 2009, Page no: 978-98.

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IRJET- Analyse Big Data Electronic Health Records Database using Hadoop Cluster

  • 1. International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 05 Issue: 03 | Mar-2018 www.irjet.net p-ISSN: 2395-0072 © 2018, IRJET | Impact Factor value: 6.171 | ISO 9001:2008 Certified Journal | Page 448 “Analyse Big Data Electronic Health Records Database using Hadoop Cluster” Mr. C.S. Arage1, Mr. M.P. Gaikwad2, Mr. Rohit Tadasare3, Mr. Ronak Bhutra4 1,2,3,4 Sou. Sushila Danchand Ghodawat Charitable Trust’s Sanjay Ghodawat Group of Institutions. Computer Science and Engineering, Shivaji University Kolhapur, Maharashtra, India ---------------------------------------------------------------------***--------------------------------------------------------------------- ABSTRACT - Big data and the related technologies have improved health care enormously, from understanding the origins of diseases, better diagnoses, helping patients to monitor their own conditions. By digitizing, combining effectively using big data, healthcare organizations can improve their quality of service by analyzing the effectiveness of a treatment and the efficiency of the healthcare delivery process and drug abuse more quickly and efficiently. General goals to use analytics are, we can predict readmission risks, increase the efficiency of clinical care, and finding opportunities for cost savings. This paper gives various solutions for how and where big data can be applied in the health care system. Apache Hadoop is open source software used to process huge data sets in the distributed computing environment using clusters and commodity hardware. MapReduce is a programming model for processing such huge data sets. Further, we propose a MapReduce Program to efficiently Analyse Electronic Health Records (EHR) database. Keywords: Big Data, HealthCare Solutions, Hadoop Use Cases, Clinical Decision Support. I.INTRODUCTION Big data is a collection of techniques and technologies,which needs new forms of integration to uncover large hidden values from large datasets that are diverse, complex,andofa massive scale. Big data can also be defined aslargevolumeof unstructured data, which cannot be handled by traditional data management tools like relationaldatabasemanagement system. The increasing digitizationofhealthcareinformation is opening new possibilities for providers and payers to enhance the excellence of care, improve healthcare outcomes, and reduce costs. Due to advance technologies, the paper works are converted into digital format (digital health records or Electronic Health Records (EHR). Since information is in digital form, healthcare providers can use some available tools and technologies to analyse that information and generate valuable insights. As health care data isgenerated in variety of devices, with highvelocityand huge volume the big data solutions are required to solve the problems of storage and processing. Therearemanybigdata technologies available to solve these issues. But as health care data need to be handled in a different way we many need to customize according to the specific purpose.Bigdata analysis in health care data can reducethecostsandimprove the quality of health care by providing a personalized health care. Big Data in healthcare industry promises to support a diverse range of healthcare data managementfunctionssuch as population health management, clinical decision support and disease surveillance. The Healthcare industry is still in the early stages of getting its feet wet in the large-scale integration and analysis of big data. With 80% of the healthcare data being unstructured, it is a challenge for the healthcare industry to make sense of all this data and leverage it effectively for Clinical operations, Medical research, and Treatment courses. II. LITERATURE REVIEW The increasing digitization of healthcare information is opening new possibilities for providers and payers to improve the quality of care, health careresults,andminimize the costs. The latest tools and technologies are used on digital information of health care organizationscangenerate valuable insights. Organizations must also analyse internal and external patient information to more accurately measure risk and outcomes. At the same time, many providers and payers are working to increase data transparency to produce new insight knowledge. Existing analytical techniques can be applied to the vast amount of existing (but currently unanalysed) patient related health and medical data to reach a deeper understanding ofresults, which can be applied at the point of care. Ideally, these data would inform each physician and their patients during the decision-making process and used to identify the appropriate treatment option for that particular patient. A. Tools and Application in Health Care System The health care system has a large volume of unstructured data, so it is impossible to do research and diagnoses without an appropriate tool or technique. Hadoop is a tool that is designed to process huge volumes of data, which is integrated with map-reduce concept. Map reduce can divide the data set into multiple chunks, each will be processed in parallel among multiple nodes. MapR can overcome the limitation of Hadoop, as it has dynamic read-writedatalayer that provides unparalleled dependability. B. Application of Big Data in Health Care: 1. Personalized Treatment Planning:Basedonthemedical histories of every individual patient, diagnoses can be done, which can be used to decide the appropriate treatment and medicine for that patient. Real time analysis will be done using MapR and Hadoop, based on the analytics results, the patient can have personalized care for them.
  • 2. International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 05 Issue: 03 | Mar-2018 www.irjet.net p-ISSN: 2395-0072 © 2018, IRJET | Impact Factor value: 6.171 | ISO 9001:2008 Certified Journal | Page 449 2. Assisted Diagnosis: Physicians can isolate and treatthe patient based on some factors like symptoms, medical history, and side effects. Using prediction modeling and Hadoop can provide information which will be helpfultothe doctors. 3. Utilization Review: To assist evidence-based treatment, which isconsidered to be the best form of treatment, the big data analytics of health information are required. The analysis can be further improved by getting information from non-traditional sources like social and other electronic media for more insightful information using big data analytics tools and techniques like Hadoop and MapReduce. C. K-Means Clustering: K-means is one of the simplest unsupervised learning algorithm that solve the well-known clusteringproblem.The procedure follows a simple and easy way to classify a given data set through a certain number of clusters (assume k clusters) fixed apriori. The main idea is to define k centres, one for each cluster. These centers should be place in a cunning way because of different location causes different result. So, the better choice is to place them as much as possible far away from each other. The next step is to take each point belonging to a given data set and associate it to the nearest center. When no point is pending, the first stepis completed and an early group age is done. At this point, we need to re-calculate k new centroids as barycentre of the clusters resulting from the previous step. After we have these k new centroids, a new binding hastobedonebetween the same data set points and the nearest new center. A loop has been generated. As a result of this loop we may notice that the k centre’s change their location step by step until no more changes are done or in other words centres do not move any more. Finally, this algorithm focus minimizing a objective function know as squared error function given by: Where, ‘||xi - vj||’ is the Euclidean distance between xi and vj. ‘ci’ is the number of data points in ith cluster. ‘c’ is the number of cluster centers. Algorithmic steps for k-means clustering Let X = {x1,x2,x3,……..,xn} be the set of data points and V = {v1,v2,…….,vc} be the set of centers. 1) Randomly select ‘c’ cluster centers. 2) Calculate the distance between each data point and cluster centers. 3) Assign the data point to the clustercenterwhosedistance from the cluster center is minimum of all the cluster centers. 4) Recalculate the new cluster center using: 5) Recalculate the distance between each data point and new obtained cluster centers. 6) If no data point was reassigned then stop, otherwise repeat from step 3). III.CONCLUSION Today healthcare providers, payers, physicians generate huge data which requires analysis to provide better health care to patients. Patients can have personalized health care and in order to reduce the cost analytics play a major role.In this paper we have seen the importance of Big Dataanalytics in health care. MapReduce model is an efficient programming paradigm for processing such huge data. . Efficient in MapReduce model can beincreasedbyimproving the efficiency of algorithm. In this paper, we propose an algorithm where the EHR database canbehandledefficiently with minimum time taken for reading the database.Thetime taken to reduce the records and write the results back to the file is also minimized. The MapReduce algorithm run on Hadoop clusters. IV. REFERENCES 1. Wimalasiri, J. S., Ray, P. and Wilson, C. S., "Maintaining Security in an Ontology Driven Multi- Agent System for Electronic Health Records", Proceedings of the IEEE Healthcom 2004, Odawara, Vol 3, June 2004. Page no:47-52 2. Sreekanth et al. “MapReduce Program to Efficiently Analyse Big Data Electronic Health Records Database using Hadoop Cluster on Amazon Elastic Compute Cloud ”, International Journal ofAdvanced Research in Computer Science and Software Engineering. Volume 5, Issue 8, August 2015.Page no: 774-777. 3. HAN HU, YONGGANG WEN, TAT-SENG CHUA, AND XUELONG LI, Toward Scalable Systems for Big Data Analytics, Vol: 2, April2014. Page No: 652-658 4. Sreekanth Rallapalli “Improving Health care - Big Data Analytics for Electronic Health Records on Cloud” IEEE Jounal of Advances in Information Technology Vol. 7,No. 1, February 2016.Pageno:65- 68 5. Haritha Chennamsetty”Predictive Analytics on Electronic Health Records(EHRs)usingHadoopand Hive”. IEEE Journals of Advances in Computer Engineering. Vol 9, Sept 2009, Page no: 978-98.