Open Science at IRD

Open Science at IRD
PascalAventurier (IST/MCST IRD)
Jean-Christophe Desconnets (MIDN IRD)
OLInFER'2018 UCI , La Habana,Cuba
November 14th, 2018
@IST_IRD email : pascal.aventurier@ird.fr jean-christophe.Desconnets@ird.fr
https://www.netvibes.com/doc_ird_de_montpellier#aides_a_la_publication
http://horizon.documentation.ird.fr

IRD French National Research Institute for
Sustainable Development
dd/mm/yyy Menu insertion / En-tête et pied de page : pour modifier globalement + date 2
Multidisciplinary : pandemics, climate change, humanitarian and political crises
equitable scientific partnership with developing countries
65 joint research units, 2100 IRD agents and 820 researchers

Open science
OLInFER'2018. IRD Open Scienxe, nov 2018

Open Access (OA)
refers to research outputs which are distributed online and free of cost
or other barriers, and possibly with the addition of a Creative
Commons license to promote reuse. Open access can be applied to all
forms of published research output, including peer-reviewed and non
peer-reviewed academic journal articles, conference papers, theses,
book chapters, and monographs. [Wikipedia]
https://www.hesge.ch/heg/infotheque/actualites/valorisez-vos-publications-grace-lopen-access

Research Data
 Recorded factual material commonly accepted in the scientific community as
necessary to validate research findings."
 Research data covers a broad range of types of information
 and digital data can be structured and stored in a variety of file formats.
 properly managing data (and records) does not necessarily equate to sharing or
publishing that data.
EXAMPLES OF RESEARCH DATA
Some examples of research data:
Documents (text,Word), spreadsheets
Questionnaires, transcripts, codebooks
Audiotapes, videotapes
Photographs, films
Protein or genetic sequences
Spectra
Test responses
Database contents (video, audio, text, images)
Models, algorithms, scripts
https://www.lib.ncsu.edu/data-management/define

Open Science Policy at different levels
Institutional
Funders (include European Union)
France : National plan for Open
Science (2018) Loi sur le Numérique
(2016)
Others
 International Aarhus convention, Nagoya
protocol
 Publishers
6OLInFER'2018. IRD Open Scienxe, nov 2018

Open Science at an Institutional level - IRD
1955 : the Library is responsible for preserving and distributing scientific and
technical documentation related to institutional's activities"
Objective and Performance Contract (2016-2020) / Action Plan 2016-2030
Contribute to free access to scientific information in developing countries
IRD must step up its actions in favor of the dissemination of scientific
information in open access. It will strengthen the skills and capacities of its
partner institutions in developing countries creation of open repository
digitization of scientific document collections…
Strengthen the visibility of infrastructures and facilitate access of scientific
data to research actors
Since 2015 : creation of the mission MIDN (Mission for Digital Data Infrastructure)
Research Data Management
Open Science
7
For an equitable access to information in particular for South countries

Open Science at Funders level
8
http://ec.europa.eu/research/participants/docs/h2020-funding-guide/cross-cutting-issues/open-access-data-management/open-
access_en.htm
Mandate On Open Access To Publications
Open access becomes the default setting for research data
generated in Horizon 2020 but with Opt out option
European Commission- Horizon 2020.
As open as possible, as closed as necessary
Opt out
option

9
http://www.agence-nationale-recherche.fr/missions-et-organisation/open-access//
http://www.agence-nationale-recherche.fr/PA2019
http://www.agence-nationale-recherche.fr/en/project-based-funding-to-advance-
french-research/
As a signatory of the "OpenArchives Partnership
Agreement and the national HAL platform", the
ANR relies on Article 30 of the law "For a Digital
Republic“ and National Plan and recommends that
all consecutive publications the projects it
finances, will be deposited in
• Full text in an open repository, directly in
HAL or through a local institutional archive.
• 2019 Mandate for Data management plan
(action plan 2019)
• S Coalition or S Plan, 11 national funders in
2020 will fund publication in OA journals

10
1- Generalizing Open Access to
publications
2 Structure research data and
make it available through Open
Access
3- Be part of a sustainable
European and international
Open Science dynamic
http://cache.media.enseignementsup-recherche.gouv.fr/file/Recherche/50/1/SO_A4_2018_EN_01_leger_982501.pdf

1- Generalizing Open Access to publications
Roadmap
–Make open access mandatory when publishing articles and books
resulting from government-funded calls for projects.
–Create an Open Science fund
Investing in open publishing systems that remain under the control of
the scientific community
In line with the Appel de Jussieu
preprints, short-format manuscripts, data articles, open peer
review, etc.
–Support the HAL national open repository
compliant with the Article 30 of the law "For a Digital Republic. 7
October 2016 . Any version of the author’s manuscript
Maximum of 6 month (STM), 12 months (SSH) embargo
–Assessment based upon quality, not quantity – explicit
reference to the San Francisco Declaration on Research
Assessment (DORA) https://sfdora.org/
11
National plan for open science
Adapted from (Romary 2018)

14/11/2018 12https://jussieucall.org/jussieu-call/
• Development of innovative scientific publishing models :
preprints, open review ….
• Research evaluation system should be adapted

2- Structure research data and make it
available through Open Access
Roadmap
–Make open access dissemination mandatory for research data resulting from
government-funded projects.
–Create the position of Chief Data Officer and the corresponding network within
the relevant institutions.
–Create the conditions for and promote the adoption of an Open Data policy for
scholarly papers.
Additional priorities
–ANR FLASH call for project to accelerate the opening of research data access in
France
–Create a research data award for outstanding teams and projects in this field
–Support the Research Data Alliance (RDA) and Software Heritage, the source code
library.
13
National plan for open science
Adapted from (Romary 2018)

Others policies
International conventions
 Nagoya Protocol on Access to Genetic Resources (2010)
https://en.wikipedia.org/wiki/Nagoya_Protocol
 Aarhus convention on environemental information. Public authorities
must provide all the information required and collect and disseminate
them and in a timely and transparent manner 2006
http://ec.europa.eu/environment/aarhus/index.htm
Publishers (Elsevier, Nature, Springer, Wiley…)
 An increasing number of journals are implementing policies and
procedures that require published articles to be accompanied by
the underlying research data
 https://www.ands.org.au/working-with-data/publishing-and-reusing-
data/data-journals/data-policies-and-journals

IRDTools for Open Science
14/11/2018 15

Open repository
Visibility
New services
To respond to the national
plan requirements
Reliable on the right to
disseminate
sustainibility
Non for Profit
Where users come from ?

Horizon : A repository for increasing visibility
17
IRD LAB
https://hal.archives-ouvertes.fr/
https://www.rechercheisidore.fr/
https://www.openaire.eu/
http://www.redalyc.org/home.oa
http://openminted.eu/
EU
internal
OAI-PMH : protocol for metadata exchange
HALThe national portal for
open repositories

Data repository project at IRD (Open mid-2019)
A cross division project (Mission for data infrastructure, Mission for
Computing services, juridical services and Libraries services)
Open source tool
Working with researchers.Collection of reactions on a panel of users
Also a support for Data management Plan
Issues
 Visibility
 Preservation
 Good practices in data management
 Connect the data repository with research information systems and Horizon
 To have an idea of our data production
 Enhance accessiblity of our data to south countries
 Be a support of open science initiatives with partners in southern countries (technical
help, training)

Open source tool create by Harvard
Use a local instance and participate to a French
network of Dataverse (Cirad, INRA, Science Po…)
Interoperability beetween Dataverses
19
https://dataverse.org/OLInFER'2018. IRD Open Scienxe, nov 2018

Conclusion
20
 Various levels of policies : IRD, Funders, National Plan for Open
Science, International that are a good background to move
towards open science.
 All french institutions are « at the same level » with the national
plan
 IRD will promote open science model with equity for South
countries
How to transform policies into actions ?
o Use of national or european Infrastructures
o Collaboration, pooling of ressources with other institutions
o Exchanges with researchers, decision makers and computing
o Research Assement should take into account Open Science.
o Librarians are playing an important role for Research data management :
advocacy, training, etc… OLInFER'2018. IRD Open Scienxe, nov 2018

References
Brunet, Emilie. 2018. “Horizon, Archive Ouverte Institutionnelle de l’IRD.” Education presented at
the Forum des AOI, Paris. https://www.slideshare.net/IST_IRD/horizon-archive-ouverte-
institutionnelle-de-lird-emilie-brunet-forum-des-aoi-13062018.
Desconnets, Jean-Christophe, Pascal Aventurier, Caroline Doucouré, and Stéphane Banon.
14:04:45 UTC. “Entrepôt de Données Ouvertes IRD. Un Service En Ligne Pour l’ouvertur….”
Education. https://www.slideshare.net/IST_IRD/entrept-de-donnes-ouvertes-ird-un-service-en-
ligne-pour-louverture-et-le-partage-des-donnes-scientifiques-au-sud-2018.
FOSTER. n.d. “Introduction to Open Science (Video),.” FOSTER : Open Science Training for
European Research. Accessed October 28, 2018.
https://www.fosteropenscience.eu/content/introduction-open-science-video.
Jones, Sarah. 2011. “How to Develop a Data Management and Sharing Plan,” 8.
http://www.dcc.ac.uk/resources/how-guides/develop-data-plan
Koulocheri, Eleni. 2018 « OpenAIRE. What Is the EC Open Research Data Pilot? » OpenAIRE.
https://www.openaire.eu/what-is-the-open-research-data-pilot.
“Data Management - H2020 Online Manual.” 2018.
http://ec.europa.eu/research/participants/docs/h2020-funding-guide/cross-cutting-issues/open-
access-data-management/data-management_en.htm.
Romary, Laurent. 2018. “Open Access in France: How the Call of Jussieu Reflects Our Social,
Technical and Political Landscape.” In . https://hal.inria.fr/hal-01881469/document.

Open Science at IRD

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