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Welcome to MARS
 Microbial Antarctic Resource System
Welcome to MARS
 Microbial Antarctic Resource System
Logistics

• WiFi login/pass
• Coffee
• Food
• Toilets
Why are we here?
•   ANTABIF: Antarctic Biodiversity Information
    Facility
•   IPY: International Polar Year
•   CAML: Census of Antarctic Marine Life
•   CCAMBIO: Climate Change and Antarctic
    Microbial Biodiversity
•   Try to design an integrated information system
    for Antarctic microbes
Proposed approach
• 1st day to capture needs and ideas
• Interactive
• Speakup
• Hands-on
• Virtual participants
• Interdisciplinary
Challenges
•   Different levels of data processing on different data sets
•   Different regions of the same gene (16S rRNA or 18S
    rRNA) that are not comparable or alignable vs. nearly
    full length gene sequences generated in the past.
•   Different levels of sequencing effort
•   Different sequencing technologies
•   Providing raw/semi processed data AND the processed
    data that publications are built on.
•   Can consider how ICoMM dealt with this for short-read
    pyrosequencing data; there are ~ 20 Southern Ocean
    data sets there in FASTA format and processed format
Challenge


To unify data from different biodiversity domains
Expected outcomes
• scope MARS
• identify prioritized requirements for MARS
• reality check: identification of technology
  and standards
• identification of stakeholders
• recommendations (white paper)
• organize SCAR OSC meeting
Today
• Intro presentations
• Discussions
• Examination of actual data
• Identification of your needs
• Identification of your priorities
• (broad) scoping and requirements for MARS
Rest of the week

• Open
• Focused groups, hands-on
• Agile, iterative workflow
• Input always welcome
• Communication @biodiversityaq

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Mars intro

  • 1. Welcome to MARS Microbial Antarctic Resource System
  • 2. Welcome to MARS Microbial Antarctic Resource System
  • 3. Logistics • WiFi login/pass • Coffee • Food • Toilets
  • 4. Why are we here? • ANTABIF: Antarctic Biodiversity Information Facility • IPY: International Polar Year • CAML: Census of Antarctic Marine Life • CCAMBIO: Climate Change and Antarctic Microbial Biodiversity • Try to design an integrated information system for Antarctic microbes
  • 5. Proposed approach • 1st day to capture needs and ideas • Interactive • Speakup • Hands-on • Virtual participants • Interdisciplinary
  • 6. Challenges • Different levels of data processing on different data sets • Different regions of the same gene (16S rRNA or 18S rRNA) that are not comparable or alignable vs. nearly full length gene sequences generated in the past. • Different levels of sequencing effort • Different sequencing technologies • Providing raw/semi processed data AND the processed data that publications are built on. • Can consider how ICoMM dealt with this for short-read pyrosequencing data; there are ~ 20 Southern Ocean data sets there in FASTA format and processed format
  • 7. Challenge To unify data from different biodiversity domains
  • 8. Expected outcomes • scope MARS • identify prioritized requirements for MARS • reality check: identification of technology and standards • identification of stakeholders • recommendations (white paper) • organize SCAR OSC meeting
  • 9. Today • Intro presentations • Discussions • Examination of actual data • Identification of your needs • Identification of your priorities • (broad) scoping and requirements for MARS
  • 10. Rest of the week • Open • Focused groups, hands-on • Agile, iterative workflow • Input always welcome • Communication @biodiversityaq

Notes de l'éditeur

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