Sherborn: Robinson - Sherborn’s Index Animalium integration into ION: access to all
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As a list of zoological taxonomic names used in the scientific literature, the Index to Organism Names (ION) has provided a reference service to researchers for a number of years, based on the content of international publications analysed for inclusion in Zoological Record®. However, this content is limited to names included in Zoological Record (1864-present). This project extends the names database and brings new opportunities through collaboration between the Smithsonian Institute, Thomson Reuters, and the Biodiversity Heritage Library to provide a more complete resource to compliment other taxonomic names services.
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Sherborn: Robinson - Sherborn’s Index Animalium integration into ION: access to all
- 1. SHERBORN’S INDEX ANIMALIUM INTEGRATION INTO ION: ACCESS TO ALL NIGEL ROBINSON DIRECTOR YORK OPERATIONS 28 OCTOBER 2011
- 2. ZOOLOGICAL RECORD & INDEX ANIMALIUM 1758 1850 ©2010 Thomson Reuters Index Animalium 1864 1999 Current ZR Zoological Record ION created and ION founded
- 3. TEXT TO DATABASE ID Image ID Page Name & reference "362382","SIL34_02_24_0193","6101","splendens Turdus, W. E. Leach, Zool. Miscell. II. 1815, 30.”
- 4. CHALLENGES • Interpretation of Index Animalium data • Inconsistent formatting, punctuation etc. in original books • OCR errors • Variant publication titles ©2010 Thomson Reuters • Application of management classification
- 5. NORMALISED DATA RECORD Genus: Turdus Species: splendens • Bibliographic Name string: Turdus splendens record Author lastname: Leach • Classification Author forename: W.E. routines Abbreviated publication name: Zool. Miscell. Full publication name: The Zoological Miscellany • ZR style entry Volume: II • Standard data Year: 1815 load and QC ©2010 Thomson Reuters Page: 30
- 6. PROCESS FLOW BIODIVERSITY COMMUNITY OUTPUT FILES ION DATA WAREHOUSE (in standard format) Correction cycles ZR CLASSIFICATION APPLIED PARSING ROUTINES ©2010 Thomson Reuters INPUT FILE
- 7. INDEX TO ORGANISM NAMES SEARCH Turdus splendens
- 9. DETAILS - MERGED RECORD
- 10. LINK OUT FOR ADDITIONAL INFORMATION
- 11. UPDATE NOTIFICATIONS – RSS ALERTS
- 13. NEXT STEPS • Load next 200,000 names • Further processing of remaining names 2011 • Load remaining names • Web services and APIs • Publication name unification 2012 • Apply unification and links to BHL ©2010 Thomson Reuters
- 14. BENEFITS OF COLLABORATION • Zoological Record production – Authority file validation – Resolution of homonyms in ZR production • Enable notification to authors – Increased links to literature and ZR in ION • Extends the list of names used in the literature to 1758 – Homonym checks – Data available for other projects • More granular digital format ©2010 Thomson Reuters • Cleaner version of the data
- 15. QUESTIONS?? • Access http://www.organismnames.com • Contact nigel.robinson@thomsonreuters.com ©2010 Thomson Reuters
Notes de l'éditeur
- More granularity needed to be a useful tool in detailed nomenclatural and bibliographic databasesBreak down data into standard bibliographic and nomenclatural fieldsEmploy current ZR editorial processes and practicesFacilitate loading to ION through normal update processes
- IA data csv fileParsing algorithmsNormalised data loaded to data warehouseZR classification appliedFurther QC, clean upAssignment of BHL linksLoad to ION, assignment of LSIDUpdate capabilities