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Ontology-based concept
   mapping in Plant
       Sciences




Katy Jordan, Department of Plant
             Sciences
Kate Taylor, Computer Laboratory
     University of Cambridge
How we encountered Threshold Concepts in
            Plant Sciences




                                        Enhance Student
   Improve Learning   Engage Students   Recruitment and
      Outcomes            Better           Retention
Research Approach

                        Identification
                        of desirable
                        practices




Analysis of                              Development
effectiveness of                         of resources
interventions




                       Implementation
                       of resources
                       and practices
Interviews with Tutors

• To identify successful tutorial activities for each
  lecture topic
• To highlight areas where extra resources are
  likely to be useful for students and tutors
• To get ideas for new types of resources
Mapping to Meyer & Land Definition
Threshold concepts identified

• Water potential
• Electrical potential
• Gene for gene hypothesis
• Circadian clock
• Species area curves
• Photoprotection
Photoprotection
Excess          Production       PSII
   CO2                            Light           of ROS           Damage
                                  Energy


Metabolism          Limited                                                 Chronic
of TrioseP



RUBISCO                          Photosynthesis                          Photoinhibition         Dynamic
Activity



RuBP               Photosynthetic
Regeneration       Rate                                                                                     Mid-day
                                             Photoprotection



Leaf                        Physiological                               Photorespiration          Stomata
Movement                    Adaptation                                                            Close

                                                  Non-
   LAI                        Sun and             Photochemical                            Water        Transpiration
                              Shade               Quenching                                Potential    Rate
                              Leaves                                                       Change       Decreases
Chloroplast
Movement
               Reflective                           Enzymes       Carotenoids   Xanthophyll
               Leaves                                                           Cycle
From concept map to ontology
      Photosynthesis




                  Photoprotection
From concept map to ontology
      Photosynthesis




                  Photoprotection

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Ontology-based concept mapping in Plant Sciences

  • 1. Ontology-based concept mapping in Plant Sciences Katy Jordan, Department of Plant Sciences Kate Taylor, Computer Laboratory University of Cambridge
  • 2. How we encountered Threshold Concepts in Plant Sciences Enhance Student Improve Learning Engage Students Recruitment and Outcomes Better Retention
  • 3. Research Approach Identification of desirable practices Analysis of Development effectiveness of of resources interventions Implementation of resources and practices
  • 4. Interviews with Tutors • To identify successful tutorial activities for each lecture topic • To highlight areas where extra resources are likely to be useful for students and tutors • To get ideas for new types of resources
  • 5. Mapping to Meyer & Land Definition
  • 6. Threshold concepts identified • Water potential • Electrical potential • Gene for gene hypothesis • Circadian clock • Species area curves • Photoprotection
  • 8. Excess Production PSII CO2 Light of ROS Damage Energy Metabolism Limited Chronic of TrioseP RUBISCO Photosynthesis Photoinhibition Dynamic Activity RuBP Photosynthetic Regeneration Rate Mid-day Photoprotection Leaf Physiological Photorespiration Stomata Movement Adaptation Close Non- LAI Sun and Photochemical Water Transpiration Shade Quenching Potential Rate Leaves Change Decreases Chloroplast Movement Reflective Enzymes Carotenoids Xanthophyll Leaves Cycle
  • 9. From concept map to ontology Photosynthesis Photoprotection
  • 10. From concept map to ontology Photosynthesis Photoprotection