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Writing a Good Paper Philip Bourne & Steven Brenner [email_address] [email_address] ISMB 2010
PB’s Perspective ,[object Object],[object Object],[object Object],[object Object],[object Object],ISMB 2010
Disclaimer Everyone is different these are just guidelines we have found useful and even these we do not necessarily agree on – consider what follows as 2 perspectives Every academic/industrial laboratory is different – alternative approaches may be more  appropriate ISMB 2010
The Facets and Believed Importance in a US Academic Career ISMB 2010
Good Papers Start with Good Science (duh) – Ask Hamming … ,[object Object],[object Object],[object Object],[object Object],[object Object],ISMB 2010 PLos Comp Biol  2007 3(10) e213
Good Papers Start with Good Science – Ask Hamming ,[object Object],[object Object],[object Object],[object Object],ISMB 2010 PLos Comp Biol  2007 3(10) e213
Okay your work is hot you, are working around the clock, now what? ISMB 2010
Start Writing the Paper on Day 1 ,[object Object],[object Object],[object Object],[object Object],ISMB 2010
Which means… If you hate writing – get over it If you do not write well take classes – the earlier the better ISMB 2010
And Remember Each Day as you Write …  what you put in the literature is your scientific legacy after all else is gone ISMB 2010
…  And Always Look From a Distance Try and see your paper as the reviewer will see it – believe me the reviewer will not see it as the best thing since sliced bread even though you do! ISMB 2010
A Few Obvious Ingredients of a Good Paper ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],ISMB 2010
Avoid the Obvious Traps ,[object Object],[object Object],ISMB 2010
How to Write a Good Paper - Pragmatically ,[object Object],[object Object],[object Object],ISMB 2010
How to Write a Good Paper - Pragmatically ,[object Object],[object Object],[object Object],ISMB 2010
Become a Reviewer (Critic) Earily ,[object Object],[object Object],[object Object],[object Object],ISMB 2010
How to Write a Good Paper - Pragmatically ,[object Object],[object Object],ISMB 2010
The Work is Never Finished, but the Paper is – Now What? ISMB 2010
Choose the Journal Wisely ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],ISMB 2010
Understand the Publishing Process ,[object Object],[object Object],[object Object],[object Object],ISMB 2010
Consider how PLoS Computational Biology works ISMB 2010
Understand that the best scientists get rejected and/or have to make major revisions, they just know how to work the process better ISMB 2010
The Post Review Phase ,[object Object],[object Object],[object Object],[object Object],[object Object],ISMB 2010
Example of What I Regard As a Good Paper ,[object Object],[object Object],[object Object],ISMB 2010 PNAS 2005 102(2): 373-378
Example of a Not So Good Paper ,[object Object],[object Object],[object Object],ISMB 2010 Bioinformatics 2003 19(7) 897-898
Questions? ISMB 2010

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How To Writea Paper10

  • 1. Writing a Good Paper Philip Bourne & Steven Brenner [email_address] [email_address] ISMB 2010
  • 2.
  • 3. Disclaimer Everyone is different these are just guidelines we have found useful and even these we do not necessarily agree on – consider what follows as 2 perspectives Every academic/industrial laboratory is different – alternative approaches may be more appropriate ISMB 2010
  • 4. The Facets and Believed Importance in a US Academic Career ISMB 2010
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  • 7. Okay your work is hot you, are working around the clock, now what? ISMB 2010
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  • 9. Which means… If you hate writing – get over it If you do not write well take classes – the earlier the better ISMB 2010
  • 10. And Remember Each Day as you Write … what you put in the literature is your scientific legacy after all else is gone ISMB 2010
  • 11. … And Always Look From a Distance Try and see your paper as the reviewer will see it – believe me the reviewer will not see it as the best thing since sliced bread even though you do! ISMB 2010
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  • 18. The Work is Never Finished, but the Paper is – Now What? ISMB 2010
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  • 21. Consider how PLoS Computational Biology works ISMB 2010
  • 22. Understand that the best scientists get rejected and/or have to make major revisions, they just know how to work the process better ISMB 2010
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