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Modelling Food Systems
as Neural Networks
John M. Ulimwengu
Senior Research Fellow, Africa Division, IFPRI (j.ulimwengu@cgiar.org)
Ferguson, Nathaniel
Intern, Africa Division, IFPRI (N.Ferguson@cgiar.org)
MOTIVATION
 In 2021, convened the UN Food Systems Summit as part of the Decade of
Action to achieve the Sustainable Development Goals (SDGs) by 2030.
 The Summit launched bold new actions to deliver progress on all 17 SDGs,
each of which relies on healthier, more sustainable, and equitable food
systems.
 The next stage is to maintain the momentum and Secure have countries
domesticate and implement outcomes
 Increasing demand for food system evidence: “identify and model” core
characteristics which enable food systems to deliver food and nutrition
security (Allen & Prosperi, 2016).
WHAT IS A FOOD SYSTEM?
Source: Tendall et al. (2015)
• Food systems comprise all
activities/actors required
to feed and nourish
people.
• Multiple value chains
contributing to food
security and other
outcomes of importance in
the region;
• Other non-food sectors;
• Drivers.
OBJECTIVE
Estimate the link between geo-localized multiple
components of a food system and food security.
CHALLENGE OF MODELLING FOOD SYSTEMS
 Food system is a network of heterogeneous components (activities/actors);
 Components work together to produce a common outcome;
 Interactions between components are non-linear relationships;
 Lack of appropriate datasets.
HUMAN BRAIN (NEURON) AND SYSTEM MODELLING
Neuron functioning
System functioning
ARTIFICIAL NEURAL NETWORKS
 Machine learning model with input nodes, output nodes, bias nodes, and
nonlinear “hidden nodes”
 Mimic the functioning of the human brain, which contains billions of
interconnected neurons.
 Learning algorithms adjusts weights and biases until the model can
accurately predict outputs.
 Reputation as black box, where results are accurate but uninterpretable.
EXAMPLES OF ARTIFICIAL NEURAL NETWORKS
APPLICATIONS
 Jean et al. utilize a convolutional neural network to predict household
expenditures from satellite data in five African countries.
 Ganguli et al. use ANNs in a similar manner to predict local food security
from satellite images.
 Jena & Majhi apply several types of ANNs to predict the behavior of maize
farmers in Kenya based on technology adoption, because decisions in
agricultural households are widely non-linear.
 In all cases, neural networks proved to be more accurate than standard
statistical methods.
Data
 Lin et al. (2019), uses existing data to estimate food flows between US
counties.
 Outflows: value of food produced in a county and consumed in another
county (in Billion USD).
 Inflows: value of food that flowed in and was consumed in a county.
 Food insecurity: Map the Meal Gap study estimates county-level food
insecurity in 2019.
Food categories
SCTG Products
1 Animals and fish (live)
2 Cereal grains (includes seed)
3 Agricultural products (excludes animal feed, cereal grains, and forage products)
4 Animal feed, eggs, honey, and other products of animal origin
5 Meat, poultry, fish, seafood, and their preparations
6 Milled grain products and preparations, and bakery products
7 Other prepared foodstuffs, fats and oils
DATA
7 food networks Food security
Data Preparation
 Data split into train and test sets (75/25 percent)
 Min-max method used to normalize input data within [0,1].
 Output data already falls in range of activation function.
xnorm = (x-minX))/(maxX - minX)
Neural Network Interpretation
 Garson’s algorithm: computes relative importance of each predictor
variable using the connection weights.
 Connection weight approach (Olden et. al, 2004): improves Garson’s by
retaining sign.
 Problem: Neural network converges to one of several local minima, rather
than “global minimum.”
 Randomization method: test network to see if connection weights differ
significantly from random.
 P-value: proportion of “random” parameter values which have a more
extreme value than the corresponding value in the “best” model
Randomization Method
 Find “best” neural network parameters.
 Run “best” model 1000 times with random starting weights, and record
variable importance scores/weight products from most predictive model.
 Randomly permute food insecurity, and run 1000 trials with same start
weights.
 P-value for significance of variable importance scores and weight
products: proportion of “random” values more extreme than corresponding
values in model.
Model Setup
 Average MSE from 50 trials of 32 neural network parameters, using
different variables, learning algorithm, and # of hidden layers
 Best model parameters will be used to create 1000 neural networks,
selecting the most accurate trial for significance testing.
Randomization Results
 After 1000 trials, the most accurate model had MSE of 0.00095, as
opposed to the generalized linear model, which had an MSE of 0.0021.
 Weight-products and variable importance scores tested for significance.
 Only 17 of 60 input-hidden-output weight-products are significant,
including all originating with inflows of Animals and Fish (live).
 10 of 14 variable importance scores are significant.
 Most extreme variable importance score: Animals and Fish (live), with
positive effect on food insecurity.
Randomization Results
Neural Interpretation Diagram
I: Inflows (SCTG 1-7)
O: Outflows (SCTG 1-7)
Discussion
 Inflows+outflows model more accurate than inflows and outflows models,
as well as linear model.
 Largest importances: Outflows of Animals and Fish (live) (SCTG 1), with
positive effect on food insecurity, and outflows of Other prepared
foodstuffs, fats, and oils (SCTG 7), with negative effect.
 Dissonance between significance of connection weights and of variable
importance scores.
 Interactions among variables can be identified as contrasting connection
weights entering the same hidden neuron. Ex: SCTG 1, 6, and 7 in hidden
neuron B.
Conclusion
 The ANN predicts food insecurity with accuracy, but results are difficult to
translate into policy objectives.
 Makes little sense to advise a county that reducing or increasing their
inflows/outflows of food categories will have a measurable impact on food
insecurity.
 Apply improved methods of ANN interpretation to food system modelling.
 Include other food system components as variables (county self-
sufficiency ratio, demographic information, infrastructure).
 Validate ANN results with evidence, as more research devoted to food
flows is published.
 Need to invest in comprehensive and geo-localised databases
THANKS

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Modelling Food Systems as Neural Networks

  • 1. Modelling Food Systems as Neural Networks John M. Ulimwengu Senior Research Fellow, Africa Division, IFPRI (j.ulimwengu@cgiar.org) Ferguson, Nathaniel Intern, Africa Division, IFPRI (N.Ferguson@cgiar.org)
  • 2. MOTIVATION  In 2021, convened the UN Food Systems Summit as part of the Decade of Action to achieve the Sustainable Development Goals (SDGs) by 2030.  The Summit launched bold new actions to deliver progress on all 17 SDGs, each of which relies on healthier, more sustainable, and equitable food systems.  The next stage is to maintain the momentum and Secure have countries domesticate and implement outcomes  Increasing demand for food system evidence: “identify and model” core characteristics which enable food systems to deliver food and nutrition security (Allen & Prosperi, 2016).
  • 3. WHAT IS A FOOD SYSTEM? Source: Tendall et al. (2015) • Food systems comprise all activities/actors required to feed and nourish people. • Multiple value chains contributing to food security and other outcomes of importance in the region; • Other non-food sectors; • Drivers.
  • 4. OBJECTIVE Estimate the link between geo-localized multiple components of a food system and food security.
  • 5. CHALLENGE OF MODELLING FOOD SYSTEMS  Food system is a network of heterogeneous components (activities/actors);  Components work together to produce a common outcome;  Interactions between components are non-linear relationships;  Lack of appropriate datasets.
  • 6. HUMAN BRAIN (NEURON) AND SYSTEM MODELLING Neuron functioning System functioning
  • 7. ARTIFICIAL NEURAL NETWORKS  Machine learning model with input nodes, output nodes, bias nodes, and nonlinear “hidden nodes”  Mimic the functioning of the human brain, which contains billions of interconnected neurons.  Learning algorithms adjusts weights and biases until the model can accurately predict outputs.  Reputation as black box, where results are accurate but uninterpretable.
  • 8. EXAMPLES OF ARTIFICIAL NEURAL NETWORKS APPLICATIONS  Jean et al. utilize a convolutional neural network to predict household expenditures from satellite data in five African countries.  Ganguli et al. use ANNs in a similar manner to predict local food security from satellite images.  Jena & Majhi apply several types of ANNs to predict the behavior of maize farmers in Kenya based on technology adoption, because decisions in agricultural households are widely non-linear.  In all cases, neural networks proved to be more accurate than standard statistical methods.
  • 9. Data  Lin et al. (2019), uses existing data to estimate food flows between US counties.  Outflows: value of food produced in a county and consumed in another county (in Billion USD).  Inflows: value of food that flowed in and was consumed in a county.  Food insecurity: Map the Meal Gap study estimates county-level food insecurity in 2019.
  • 10. Food categories SCTG Products 1 Animals and fish (live) 2 Cereal grains (includes seed) 3 Agricultural products (excludes animal feed, cereal grains, and forage products) 4 Animal feed, eggs, honey, and other products of animal origin 5 Meat, poultry, fish, seafood, and their preparations 6 Milled grain products and preparations, and bakery products 7 Other prepared foodstuffs, fats and oils
  • 11. DATA 7 food networks Food security
  • 12. Data Preparation  Data split into train and test sets (75/25 percent)  Min-max method used to normalize input data within [0,1].  Output data already falls in range of activation function. xnorm = (x-minX))/(maxX - minX)
  • 13. Neural Network Interpretation  Garson’s algorithm: computes relative importance of each predictor variable using the connection weights.  Connection weight approach (Olden et. al, 2004): improves Garson’s by retaining sign.  Problem: Neural network converges to one of several local minima, rather than “global minimum.”  Randomization method: test network to see if connection weights differ significantly from random.  P-value: proportion of “random” parameter values which have a more extreme value than the corresponding value in the “best” model
  • 14. Randomization Method  Find “best” neural network parameters.  Run “best” model 1000 times with random starting weights, and record variable importance scores/weight products from most predictive model.  Randomly permute food insecurity, and run 1000 trials with same start weights.  P-value for significance of variable importance scores and weight products: proportion of “random” values more extreme than corresponding values in model.
  • 15. Model Setup  Average MSE from 50 trials of 32 neural network parameters, using different variables, learning algorithm, and # of hidden layers  Best model parameters will be used to create 1000 neural networks, selecting the most accurate trial for significance testing.
  • 16. Randomization Results  After 1000 trials, the most accurate model had MSE of 0.00095, as opposed to the generalized linear model, which had an MSE of 0.0021.  Weight-products and variable importance scores tested for significance.  Only 17 of 60 input-hidden-output weight-products are significant, including all originating with inflows of Animals and Fish (live).  10 of 14 variable importance scores are significant.  Most extreme variable importance score: Animals and Fish (live), with positive effect on food insecurity.
  • 18. Neural Interpretation Diagram I: Inflows (SCTG 1-7) O: Outflows (SCTG 1-7)
  • 19. Discussion  Inflows+outflows model more accurate than inflows and outflows models, as well as linear model.  Largest importances: Outflows of Animals and Fish (live) (SCTG 1), with positive effect on food insecurity, and outflows of Other prepared foodstuffs, fats, and oils (SCTG 7), with negative effect.  Dissonance between significance of connection weights and of variable importance scores.  Interactions among variables can be identified as contrasting connection weights entering the same hidden neuron. Ex: SCTG 1, 6, and 7 in hidden neuron B.
  • 20. Conclusion  The ANN predicts food insecurity with accuracy, but results are difficult to translate into policy objectives.  Makes little sense to advise a county that reducing or increasing their inflows/outflows of food categories will have a measurable impact on food insecurity.  Apply improved methods of ANN interpretation to food system modelling.  Include other food system components as variables (county self- sufficiency ratio, demographic information, infrastructure).  Validate ANN results with evidence, as more research devoted to food flows is published.  Need to invest in comprehensive and geo-localised databases