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Molecular Biology 1-1

         put together by: Linda Fahlberg-Stojanovska

    Disclaimer: I put these together for my kid for his smartphone.
 However, I found most images had very small type and increased the
font size. I am posting it because another teacher might find this useful.
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                                                                           1
Contents
• Life
• Evolution
KEYWORDS
Life is the primary characteristic of organisms.
Organism is any connected living system capable of
    •   response to stimuli,
    •   reproduction,
    •   growth and development
    •   adaptation to environment
    •   homeostasis

Homeostasis is the property of organisms
    •   regulates its internal environment
    •   maintains a system of stable constant conditions like
         • temperature or pH.


                                                                3
KEYWORDS
Cell is the basic structural and functional unit of an
    organism. The main purpose of cell is to organize.
Organelle is a subunit within a cell with a specific
        function. It is usually membrane-bound.
Tissue is a layer of cells that are alike and work
 together for a specific function. Tissue is the cellular
    organizational level between cells and a complete organ.

Organ is a
•       functional group of multiple tissues
•       relatively independent part of the body
•       carries out one or more special functions

                                                               4
Organisms
can be classified as:
   - single-cellular
   - multi-cellular


Prokaryotes: bacteria and archaea
Eukaryotes: all other organisms!

Viruses are not organisms or cells.


                                      5
Prokaryotes
    •   unicellular
    •   no cell nucleus
    •   no mitochondria
    •   no membrane-bound organelles

Neither their DNA nor sites of metabolic activity are
collected together in a discrete membrane-enclosed
area.
Instead, everything is openly accessible within the
cell, some of which is free-floating.


                                                        6
Prokaryotes vs. Eukaryotes




                                                               7
            teacherweb.com/IND/.../PROKARYOTIC_CELL_new_part_2.do
            c
Developmental Eras
• Earth is probably 4.5 billion years old
• 3.8 billion years of simple cells
   (prokaryotes = bacteria and archaea)
• 3 billion years of photosynthesis,
• 2 billion years of complex cells (eukaryotes),
• 1 billion years of multicellular life,
• 600 million years of simple animals,




                                                   8
Cell Size
Bacteria
    • microbacteria ~150 nm
    • E. coli 1,5 µm x 5 µm
    • Exceptional: ~10 µm up to >100 µm

Human Cells:
   • erithrocytes ~ 8 µm
   • ovum (egg) ~ 100 µm
   • nerve cells ~ 4 µm – 100 µm

                                          9
CELL
Cell is the basic structural and functional unit of an
 organism.

Humans contain about
 10 trillion (1013) cells.

Most plant and animal cells are
  • between 1 and 100 µm
  • Visible only under the
     microscope.




                 http://toolboxes.flexiblelearning.net.au/demosites/series3/308/laboratory/studynotes/SN-   10
                 OilImmer.htm
Relative Sizes




http://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookCELL2.html




                                                                      11
KEYWORDS

Evolution is a science that investigates the
 development of species.
Creationism is the belief that life on Earth was created
 directly by a supernatural being.
Phylogeny is the science that studies the evolutionary
 relationships between groups of organisms
 (populations, species, ...).
Taxonomy is a system of classification of organisms
 into groups according to their relationships and
 evolutionary development

                                                           12
Evolution and Mutation
Start with:
• Common origin of species.
• Genetic changes accumulate and lead to the emergence of
  new characteristics.
• Genetic changes are the result of mutations, introduction of
  new genes or recombination of genes.
• New characteristics are inherited.
• Natural selection: the environment represents a selection
  pressure to force only characteristics that represent an
  advantage for survival and reproduction.
• When populations are separated, different characteristics are
  selected and new species develop.

                                                                  13
Evolution and Mutation




                                                                          14
   http://en.wikipedia.org/wiki/File:Mutation_and_selection_diagram.svg
Classification Organisms - Domains
Category: Domain
There are 3 domains.
   - Bacteria
   - Archaea
   - Eukaryotes

In 1990, the category “Domain” was added after C. R. Woese
distinguished Bacteria and Archaea based on differences in their
rRNA 16S
The three-domain system adds the level of classification Domains
above the level of Kingdoms.

                                                                   15
Taxonomy
DOMAIN   Eukaryota




                                                                  16
                     http://en.wikipedia.org/wiki/Domain_%28biology%29
Kingdoms = 6
Prokaryotes: eubacteria, archaebacteria
Eukaryotes: protista, plants, animals, fungi



History of Kingdoms
Linnéas: 2 (animals and plants)
 ~1960: 4 basic divisions
    prokaryotes and eukaryotes
 ~1969: 5 (fungi is added)
 ~1980: 6


                                                                                   17
       http://www.emc.maricopa.edu/faculty/farabee/biobk/biobookdiversity_3.html
History of Taxonomy
On the Earth there are 5-100 million different species of organisms.
They differ in morphology, biochemical and genetic characteristics.
The first really successful attempt at grouping of organisms was
carried out by Linnaeus with the introduction of species and genera.
Species representing "all instances of creatures” that are each equal
to the smallest details of physical structure.
Darwin: " “all true classification is genealogical”
Ernst Mayer (~ 1940): biological species is a population or set of
populations who can breed with each other and have fertile
offspring.


                                                                       18
Keywords
• Morphology (biology): the study of the form or shape of an
  organism.
• Biochemical Characteristics: characteristics which describe
  the chemical substances and vital processes occurring in
  living organisms.
• Genetic Characteristics: characteristics which are related to
  heredity and the variation of inherited characteristics
  among similar or related organisms.



                                                               19
Genotype vs. Phenotype
Genotype: All of the genetic code of an organism.
Phenotype: All of the properties of an organism.
Phenotype reflects the genotype, as well as environmental influences
              (diet, climate, injuries, lifestyle, …).




                   http://www.bbc.co.uk/schools/gcsebitesize/science/edexcel/genes/genesrev_print.shtml
                                                                                                          20
Phylogenic Tree

Phylogenic tree can be drawn on the basis of:
- similaritiesbetween organisms
        (fosils and their age, anatomy,…)

- differences between their amino acids and proteins
- differences between nucleotides in their DNA and RNA
    Differences based on molecular biology is called
                 molecular phylogeny.
      A node (taxa) joined together in the tree implies
        “descended from a common ancestor”.
                                                          21
Phylogenetic Tree for the 3 Domains




                                                         22
        http://en.wikipedia.org/wiki/Phylogenetic_tree
Dots indicate common ancestor.
   Numbers indicate “relative” amount of change in genome.

Phylogenetic tree based on similarities between genome sequences.

   The genome is an organism’s complete set of DNA.


                                                                 23
               https://www.llnl.gov/str/June05/Ovcharenko.html

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Molecular Biology 1-1

  • 1. Molecular Biology 1-1 put together by: Linda Fahlberg-Stojanovska Disclaimer: I put these together for my kid for his smartphone. However, I found most images had very small type and increased the font size. I am posting it because another teacher might find this useful. The sources are given. If I have used anything illegally, write me and I will take it off. 1
  • 3. KEYWORDS Life is the primary characteristic of organisms. Organism is any connected living system capable of • response to stimuli, • reproduction, • growth and development • adaptation to environment • homeostasis Homeostasis is the property of organisms • regulates its internal environment • maintains a system of stable constant conditions like • temperature or pH. 3
  • 4. KEYWORDS Cell is the basic structural and functional unit of an organism. The main purpose of cell is to organize. Organelle is a subunit within a cell with a specific function. It is usually membrane-bound. Tissue is a layer of cells that are alike and work together for a specific function. Tissue is the cellular organizational level between cells and a complete organ. Organ is a • functional group of multiple tissues • relatively independent part of the body • carries out one or more special functions 4
  • 5. Organisms can be classified as: - single-cellular - multi-cellular Prokaryotes: bacteria and archaea Eukaryotes: all other organisms! Viruses are not organisms or cells. 5
  • 6. Prokaryotes • unicellular • no cell nucleus • no mitochondria • no membrane-bound organelles Neither their DNA nor sites of metabolic activity are collected together in a discrete membrane-enclosed area. Instead, everything is openly accessible within the cell, some of which is free-floating. 6
  • 7. Prokaryotes vs. Eukaryotes 7 teacherweb.com/IND/.../PROKARYOTIC_CELL_new_part_2.do c
  • 8. Developmental Eras • Earth is probably 4.5 billion years old • 3.8 billion years of simple cells (prokaryotes = bacteria and archaea) • 3 billion years of photosynthesis, • 2 billion years of complex cells (eukaryotes), • 1 billion years of multicellular life, • 600 million years of simple animals, 8
  • 9. Cell Size Bacteria • microbacteria ~150 nm • E. coli 1,5 µm x 5 µm • Exceptional: ~10 µm up to >100 µm Human Cells: • erithrocytes ~ 8 µm • ovum (egg) ~ 100 µm • nerve cells ~ 4 µm – 100 µm 9
  • 10. CELL Cell is the basic structural and functional unit of an organism. Humans contain about 10 trillion (1013) cells. Most plant and animal cells are • between 1 and 100 µm • Visible only under the microscope. http://toolboxes.flexiblelearning.net.au/demosites/series3/308/laboratory/studynotes/SN- 10 OilImmer.htm
  • 12. KEYWORDS Evolution is a science that investigates the development of species. Creationism is the belief that life on Earth was created directly by a supernatural being. Phylogeny is the science that studies the evolutionary relationships between groups of organisms (populations, species, ...). Taxonomy is a system of classification of organisms into groups according to their relationships and evolutionary development 12
  • 13. Evolution and Mutation Start with: • Common origin of species. • Genetic changes accumulate and lead to the emergence of new characteristics. • Genetic changes are the result of mutations, introduction of new genes or recombination of genes. • New characteristics are inherited. • Natural selection: the environment represents a selection pressure to force only characteristics that represent an advantage for survival and reproduction. • When populations are separated, different characteristics are selected and new species develop. 13
  • 14. Evolution and Mutation 14 http://en.wikipedia.org/wiki/File:Mutation_and_selection_diagram.svg
  • 15. Classification Organisms - Domains Category: Domain There are 3 domains. - Bacteria - Archaea - Eukaryotes In 1990, the category “Domain” was added after C. R. Woese distinguished Bacteria and Archaea based on differences in their rRNA 16S The three-domain system adds the level of classification Domains above the level of Kingdoms. 15
  • 16. Taxonomy DOMAIN Eukaryota 16 http://en.wikipedia.org/wiki/Domain_%28biology%29
  • 17. Kingdoms = 6 Prokaryotes: eubacteria, archaebacteria Eukaryotes: protista, plants, animals, fungi History of Kingdoms Linnéas: 2 (animals and plants) ~1960: 4 basic divisions prokaryotes and eukaryotes ~1969: 5 (fungi is added) ~1980: 6 17 http://www.emc.maricopa.edu/faculty/farabee/biobk/biobookdiversity_3.html
  • 18. History of Taxonomy On the Earth there are 5-100 million different species of organisms. They differ in morphology, biochemical and genetic characteristics. The first really successful attempt at grouping of organisms was carried out by Linnaeus with the introduction of species and genera. Species representing "all instances of creatures” that are each equal to the smallest details of physical structure. Darwin: " “all true classification is genealogical” Ernst Mayer (~ 1940): biological species is a population or set of populations who can breed with each other and have fertile offspring. 18
  • 19. Keywords • Morphology (biology): the study of the form or shape of an organism. • Biochemical Characteristics: characteristics which describe the chemical substances and vital processes occurring in living organisms. • Genetic Characteristics: characteristics which are related to heredity and the variation of inherited characteristics among similar or related organisms. 19
  • 20. Genotype vs. Phenotype Genotype: All of the genetic code of an organism. Phenotype: All of the properties of an organism. Phenotype reflects the genotype, as well as environmental influences (diet, climate, injuries, lifestyle, …). http://www.bbc.co.uk/schools/gcsebitesize/science/edexcel/genes/genesrev_print.shtml 20
  • 21. Phylogenic Tree Phylogenic tree can be drawn on the basis of: - similaritiesbetween organisms (fosils and their age, anatomy,…) - differences between their amino acids and proteins - differences between nucleotides in their DNA and RNA Differences based on molecular biology is called molecular phylogeny. A node (taxa) joined together in the tree implies “descended from a common ancestor”. 21
  • 22. Phylogenetic Tree for the 3 Domains 22 http://en.wikipedia.org/wiki/Phylogenetic_tree
  • 23. Dots indicate common ancestor. Numbers indicate “relative” amount of change in genome. Phylogenetic tree based on similarities between genome sequences. The genome is an organism’s complete set of DNA. 23 https://www.llnl.gov/str/June05/Ovcharenko.html